Wall clock time and date at job start Tue Mar 31 2020 06:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35000 * 127.27180 * 2 1 4 4 C 1.39485 * 111.67933 * 180.13527 * 3 2 1 5 5 C 1.47688 * 122.10260 * 179.78050 * 4 3 2 6 6 O 1.21574 * 120.00441 * 359.73673 * 5 4 3 7 7 N 1.34778 * 120.00303 * 179.73658 * 5 4 3 8 8 C 1.47874 * 126.94183 * 0.02562 * 7 5 4 9 9 C 1.56014 * 105.19097 * 182.03954 * 8 7 5 10 10 H 1.09004 * 116.25037 * 159.63370 * 9 8 7 11 11 C 1.57082 * 99.60807 * 32.75371 * 9 8 7 12 12 C 1.49509 * 127.06284 * 179.97438 * 7 5 4 13 13 H 1.09002 * 116.74795 * 16.29647 * 12 7 5 14 14 C 1.56022 * 104.14370 * 246.67737 * 12 7 5 15 15 N 1.47877 * 105.10059 * 288.75973 * 14 12 7 16 16 C 1.36931 * 126.94144 * 181.98451 * 15 14 12 17 17 H 1.08006 * 120.00127 * 180.02562 * 16 15 14 18 18 C 1.38809 * 120.00370 * 0.02562 * 16 15 14 19 19 N 1.31623 * 120.00075 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00095 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47103 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46841 * 120.00862 * 20 18 16 23 23 H 1.48501 * 109.46997 * 240.00463 * 20 18 16 24 24 N 1.30605 * 115.79378 * 359.51206 * 4 3 2 25 25 S 1.56145 * 109.80036 * 0.26926 * 24 4 3 26 26 H 1.09006 * 109.47236 * 180.33982 * 1 2 3 27 27 H 1.09001 * 109.47585 * 300.34160 * 1 2 3 28 28 H 1.09008 * 109.47240 * 60.33744 * 1 2 3 29 29 H 1.07995 * 124.16339 * 359.91065 * 3 2 1 30 30 H 1.09002 * 110.31604 * 63.08127 * 8 7 5 31 31 H 1.09004 * 110.31557 * 300.99664 * 8 7 5 32 32 H 1.09007 * 112.36824 * 64.27640 * 11 9 8 33 33 H 1.09001 * 112.36928 * 191.70963 * 11 9 8 34 34 H 1.08999 * 110.31620 * 169.85894 * 14 12 7 35 35 H 1.08999 * 110.39941 * 47.70657 * 14 12 7 36 36 H 0.96995 * 120.00002 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0743 0.0000 4 6 3.6681 0.6994 -0.0031 5 6 4.7603 1.6934 -0.0085 6 8 4.5013 2.8812 -0.0153 7 7 6.0444 1.2838 -0.0059 8 6 6.5319 -0.1122 0.0015 9 6 8.0872 -0.0018 0.0550 10 1 8.6213 -0.8841 0.4079 11 6 8.2277 1.3106 0.9068 12 6 7.2654 2.1466 -0.0111 13 1 7.1269 3.1944 0.2556 14 6 7.9225 1.8690 -1.3987 15 7 8.4631 0.4961 -1.3012 16 6 9.1661 -0.1817 -2.2611 17 1 9.5097 -1.1876 -2.0696 18 6 9.4370 0.4239 -3.4804 19 7 9.0187 1.6499 -3.7137 20 14 10.3954 -0.5011 -4.7902 21 1 10.7480 -1.8520 -4.2842 22 1 9.5626 -0.6325 -6.0126 23 1 11.6371 0.2459 -5.1151 24 7 3.8994 -0.5860 0.0047 25 16 2.5472 -1.3668 0.0087 26 1 -0.3634 -1.0277 0.0061 27 1 -0.3634 0.5191 0.8869 28 1 -0.3634 0.5086 -0.8931 29 1 1.9807 2.0980 -0.0014 30 1 6.2201 -0.6268 -0.9073 31 1 6.1594 -0.6385 0.8804 32 1 7.8381 1.1926 1.9180 33 1 9.2458 1.6999 0.9040 34 1 8.7271 2.5801 -1.5855 35 1 7.1760 1.9264 -2.1909 36 1 9.2084 2.0732 -4.5656 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032375651.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:42 Heat of formation + Delta-G solvation = 71.500462 kcal Electronic energy + Delta-G solvation = -21465.146073 eV Core-core repulsion = 18271.158559 eV Total energy + Delta-G solvation = -3193.987513 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.43606 -39.14475 -37.30775 -33.79448 -33.20358 -31.41688 -29.06731 -28.51469 -28.26253 -25.63642 -25.08857 -23.21332 -21.06209 -20.03820 -19.80053 -18.59947 -18.22877 -17.12335 -16.17321 -15.76730 -15.48061 -14.90283 -14.28302 -14.15955 -13.84037 -13.35520 -13.29065 -13.08848 -12.84135 -12.78518 -12.21958 -11.89999 -11.60998 -11.31502 -11.10831 -10.99847 -10.94204 -10.85147 -10.60489 -10.57787 -10.17525 -10.02893 -9.64096 -9.57383 -9.50379 -8.78387 -8.68583 -7.96442 -6.89068 -5.74540 -3.08468 0.62933 1.40213 1.86822 1.87853 3.33926 3.38604 3.43498 3.46533 3.57798 4.44287 4.50810 4.82623 5.00787 5.15304 5.20456 5.26059 5.27321 5.38912 5.56256 5.61695 5.67870 5.73068 5.78496 5.82752 6.12158 6.26218 6.29448 6.39345 6.47724 6.61889 6.64456 6.80034 7.44317 7.50275 7.73686 8.04896 8.12602 8.50212 9.12661 9.73557 10.43046 11.37924 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.004649 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.154462 B = 6021.684406 C = 6496.764635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.252 4.252 3 C -0.142 4.142 4 C 0.066 3.934 5 C 0.598 3.402 6 O -0.548 6.548 7 N -0.585 5.585 8 C 0.101 3.899 9 C 0.137 3.863 10 H 0.106 0.894 11 C -0.150 4.150 12 C 0.098 3.902 13 H 0.116 0.884 14 C 0.175 3.825 15 N -0.598 5.598 16 C -0.229 4.229 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 0.912 3.088 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.290 1.290 24 N -0.503 5.503 25 S 0.439 5.561 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.169 0.831 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.202 -5.113 10.311 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.383 4.383 3 C -0.174 4.174 4 C -0.108 4.108 5 C 0.381 3.619 6 O -0.426 6.426 7 N -0.317 5.317 8 C -0.025 4.025 9 C 0.028 3.972 10 H 0.124 0.876 11 C -0.190 4.190 12 C -0.004 4.004 13 H 0.134 0.866 14 C 0.050 3.950 15 N -0.322 5.322 16 C -0.357 4.357 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.567 5.567 20 Si 0.743 3.257 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 N -0.337 5.337 25 S 0.594 5.406 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.186 0.814 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.545 -6.445 10.032 18.046 hybrid contribution 0.031 1.462 -0.938 1.737 sum -13.514 -4.983 9.095 17.034 Atomic orbital electron populations 1.20172 0.86319 1.03097 1.03373 1.26046 1.03105 1.00233 1.08886 1.21214 0.90357 1.01821 1.04035 1.21154 0.94901 0.89330 1.05464 1.16822 0.80773 0.86441 0.77840 1.90758 1.82917 1.16021 1.52926 1.49083 1.04031 1.09836 1.68727 1.23289 0.96758 0.81226 1.01185 1.23279 0.91127 0.95464 0.87366 0.87585 1.24154 0.99575 0.98330 0.96955 1.24458 0.81652 0.94746 0.99571 0.86611 1.21924 0.96286 0.86862 0.89969 1.45252 1.63517 1.12706 1.10753 1.19102 1.26762 0.97160 0.92629 0.90101 1.24813 1.01029 0.96628 0.97883 1.69924 1.50190 1.12767 1.23845 0.86042 0.79239 0.78705 0.81734 1.20457 1.21840 1.21732 1.72648 1.27338 1.10798 1.22906 1.80474 0.88362 1.13183 1.58601 0.91001 0.90319 0.90269 0.81391 0.90688 0.92365 0.91626 0.89623 0.92400 0.93479 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.46 36.01 0.38 -0.12 16 2 C -0.25 -2.77 6.58 -35.46 -0.23 -3.00 16 3 C -0.14 -1.99 9.93 -40.27 -0.40 -2.39 16 4 C 0.07 1.13 6.62 -84.06 -0.56 0.58 16 5 C 0.60 12.07 7.89 -12.40 -0.10 11.98 16 6 O -0.55 -12.10 17.03 5.30 0.09 -12.01 16 7 N -0.59 -11.81 2.96 -157.76 -0.47 -12.28 16 8 C 0.10 1.93 4.86 -1.68 -0.01 1.92 16 9 C 0.14 2.68 5.53 -62.56 -0.35 2.33 16 10 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 11 C -0.15 -2.66 6.81 -22.30 -0.15 -2.81 16 12 C 0.10 1.98 5.24 -62.42 -0.33 1.65 16 13 H 0.12 2.22 8.09 -51.93 -0.42 1.80 16 14 C 0.17 4.32 4.77 -1.67 -0.01 4.31 16 15 N -0.60 -14.85 3.02 -156.34 -0.47 -15.32 16 16 C -0.23 -6.22 10.37 -15.06 -0.16 -6.38 16 17 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 18 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 19 N -0.92 -27.27 10.56 55.49 0.59 -26.68 16 20 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 24 N -0.50 -8.02 8.45 24.85 0.21 -7.81 16 25 S 0.44 5.01 23.20 -107.50 -2.49 2.51 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.17 2.24 7.99 -52.49 -0.42 1.82 16 30 H 0.07 1.63 7.79 -51.93 -0.40 1.22 16 31 H 0.06 1.00 7.58 -51.93 -0.39 0.61 16 32 H 0.07 1.02 8.14 -51.92 -0.42 0.59 16 33 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.06 1.55 7.46 -51.93 -0.39 1.16 16 35 H 0.05 1.35 7.67 -51.93 -0.40 0.95 16 36 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -32.77 312.20 -9.37 -42.14 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.51 Total: -0.08 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -2.00 Total: 7.78 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.14 Total: -62.09 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -2.49 Total: 2.51 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.77 -9.37 -42.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032375651.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.644 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds