Wall clock time and date at job start Tue Mar 31 2020 06:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35000 * 127.27180 * 2 1 4 4 C 1.39485 * 111.67933 * 180.13527 * 3 2 1 5 5 C 1.47688 * 122.10260 * 179.78050 * 4 3 2 6 6 O 1.21574 * 120.00441 * 359.73673 * 5 4 3 7 7 N 1.34778 * 120.00303 * 179.73658 * 5 4 3 8 8 C 1.47874 * 126.94183 * 0.02562 * 7 5 4 9 9 C 1.56014 * 105.19097 * 182.03954 * 8 7 5 10 10 H 1.09004 * 116.25037 * 159.63370 * 9 8 7 11 11 C 1.57082 * 99.60807 * 32.75371 * 9 8 7 12 12 C 1.49509 * 127.06284 * 179.97438 * 7 5 4 13 13 H 1.09002 * 116.74795 * 16.29647 * 12 7 5 14 14 C 1.56022 * 104.14370 * 246.67737 * 12 7 5 15 15 N 1.47877 * 105.10059 * 288.75973 * 14 12 7 16 16 C 1.36931 * 126.94144 * 181.98451 * 15 14 12 17 17 H 1.08006 * 120.00127 * 180.02562 * 16 15 14 18 18 C 1.38809 * 120.00370 * 0.02562 * 16 15 14 19 19 N 1.31623 * 120.00075 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00095 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47103 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46841 * 120.00862 * 20 18 16 23 23 H 1.48501 * 109.46997 * 240.00463 * 20 18 16 24 24 N 1.30605 * 115.79378 * 359.51206 * 4 3 2 25 25 S 1.56145 * 109.80036 * 0.26926 * 24 4 3 26 26 H 1.09006 * 109.47236 * 180.33982 * 1 2 3 27 27 H 1.09001 * 109.47585 * 300.34160 * 1 2 3 28 28 H 1.09008 * 109.47240 * 60.33744 * 1 2 3 29 29 H 1.07995 * 124.16339 * 359.91065 * 3 2 1 30 30 H 1.09002 * 110.31604 * 63.08127 * 8 7 5 31 31 H 1.09004 * 110.31557 * 300.99664 * 8 7 5 32 32 H 1.09007 * 112.36824 * 64.27640 * 11 9 8 33 33 H 1.09001 * 112.36928 * 191.70963 * 11 9 8 34 34 H 1.08999 * 110.31620 * 169.85894 * 14 12 7 35 35 H 1.08999 * 110.39941 * 47.70657 * 14 12 7 36 36 H 0.96995 * 120.00002 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0743 0.0000 4 6 3.6681 0.6994 -0.0031 5 6 4.7603 1.6934 -0.0085 6 8 4.5013 2.8812 -0.0153 7 7 6.0444 1.2838 -0.0059 8 6 6.5319 -0.1122 0.0015 9 6 8.0872 -0.0018 0.0550 10 1 8.6213 -0.8841 0.4079 11 6 8.2277 1.3106 0.9068 12 6 7.2654 2.1466 -0.0111 13 1 7.1269 3.1944 0.2556 14 6 7.9225 1.8690 -1.3987 15 7 8.4631 0.4961 -1.3012 16 6 9.1661 -0.1817 -2.2611 17 1 9.5097 -1.1876 -2.0696 18 6 9.4370 0.4239 -3.4804 19 7 9.0187 1.6499 -3.7137 20 14 10.3954 -0.5011 -4.7902 21 1 10.7480 -1.8520 -4.2842 22 1 9.5626 -0.6325 -6.0126 23 1 11.6371 0.2459 -5.1151 24 7 3.8994 -0.5860 0.0047 25 16 2.5472 -1.3668 0.0087 26 1 -0.3634 -1.0277 0.0061 27 1 -0.3634 0.5191 0.8869 28 1 -0.3634 0.5086 -0.8931 29 1 1.9807 2.0980 -0.0014 30 1 6.2201 -0.6268 -0.9073 31 1 6.1594 -0.6385 0.8804 32 1 7.8381 1.1926 1.9180 33 1 9.2458 1.6999 0.9040 34 1 8.7271 2.5801 -1.5855 35 1 7.1760 1.9264 -2.1909 36 1 9.2084 2.0732 -4.5656 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032375651.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:41 Heat of formation + Delta-G solvation = 50.138530 kcal Electronic energy + Delta-G solvation = -21466.072396 eV Core-core repulsion = 18271.158559 eV Total energy + Delta-G solvation = -3194.913836 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.89495 -40.52336 -38.82907 -35.54722 -34.33180 -33.17180 -30.83557 -30.29104 -29.18099 -27.02863 -26.82503 -24.91949 -22.43984 -21.48948 -21.23675 -20.19494 -19.47510 -18.74120 -17.76589 -17.39831 -16.90304 -16.57689 -15.84914 -15.57178 -15.21974 -14.86375 -14.69164 -14.07437 -13.84535 -13.80086 -13.60860 -13.49450 -13.39666 -13.14725 -12.86711 -12.76754 -12.43636 -12.21953 -12.17353 -12.02119 -11.92376 -11.73119 -11.56079 -11.11507 -10.74224 -10.46187 -9.87734 -9.53918 -8.93037 -7.86493 -5.22412 -0.45064 0.46465 0.68971 0.79524 1.45061 1.46010 1.56410 1.86960 2.13960 2.46756 3.28719 3.33664 3.48036 3.70211 3.78239 3.89246 3.97542 4.16137 4.20596 4.29980 4.56630 4.65748 4.70691 4.77889 4.81351 4.90943 4.94626 4.97673 5.08920 5.18229 5.22459 5.31902 5.41577 5.52728 5.62017 6.07400 6.49989 6.95626 7.00797 7.68138 8.39069 9.25241 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.004649 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.154462 B = 6021.684406 C = 6496.764635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.232 4.232 3 C -0.165 4.165 4 C 0.037 3.963 5 C 0.589 3.411 6 O -0.579 6.579 7 N -0.593 5.593 8 C 0.117 3.883 9 C 0.131 3.869 10 H 0.135 0.865 11 C -0.126 4.126 12 C 0.100 3.900 13 H 0.123 0.877 14 C 0.189 3.811 15 N -0.617 5.617 16 C -0.230 4.230 17 H 0.095 0.905 18 C -0.071 4.071 19 N -0.958 5.958 20 Si 0.979 3.021 21 H -0.258 1.258 22 H -0.300 1.300 23 H -0.294 1.294 24 N -0.544 5.544 25 S 0.518 5.482 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.167 0.833 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.025 0.975 35 H -0.007 1.007 36 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.674 -7.721 12.145 21.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.363 4.363 3 C -0.197 4.197 4 C -0.135 4.135 5 C 0.375 3.625 6 O -0.460 6.460 7 N -0.324 5.324 8 C -0.008 4.008 9 C 0.024 3.976 10 H 0.153 0.847 11 C -0.165 4.165 12 C -0.002 4.002 13 H 0.140 0.860 14 C 0.063 3.937 15 N -0.341 5.341 16 C -0.359 4.359 17 H 0.113 0.887 18 C -0.264 4.264 19 N -0.608 5.608 20 Si 0.807 3.193 21 H -0.182 1.182 22 H -0.228 1.228 23 H -0.221 1.221 24 N -0.380 5.380 25 S 0.673 5.327 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.184 0.816 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.043 0.957 35 H 0.012 0.988 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -15.023 -9.085 11.916 21.218 hybrid contribution 0.321 2.150 -1.486 2.634 sum -14.702 -6.935 10.430 19.314 Atomic orbital electron populations 1.20421 0.83100 1.05189 1.04545 1.26542 1.05008 0.99009 1.05736 1.21225 0.89708 1.02810 1.05911 1.20861 0.94765 0.89215 1.08665 1.17414 0.81400 0.86931 0.76791 1.90713 1.83525 1.17569 1.54193 1.49165 1.04163 1.10080 1.69009 1.23052 0.96129 0.80684 1.00910 1.23688 0.91440 0.97343 0.85079 0.84735 1.24049 0.99086 0.95689 0.97660 1.24342 0.82560 0.95960 0.97372 0.85958 1.21517 0.94051 0.86844 0.91336 1.45509 1.63206 1.12760 1.12660 1.19587 1.25571 0.97664 0.93093 0.88732 1.25679 1.02821 0.97535 1.00339 1.70168 1.52189 1.14591 1.23817 0.84995 0.77323 0.78349 0.78595 1.18213 1.22782 1.22077 1.72254 1.31274 1.10623 1.23896 1.80099 0.85944 1.11205 1.55441 0.88467 0.88728 0.89318 0.81559 0.93647 0.89622 0.88067 0.89301 0.95651 0.98841 0.94662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.46 71.24 0.75 0.00 16 2 C -0.23 -4.46 6.58 24.94 0.16 -4.29 16 3 C -0.16 -4.50 9.93 21.83 0.22 -4.29 16 4 C 0.04 1.27 6.62 42.13 0.28 1.54 16 5 C 0.59 24.43 7.89 86.74 0.68 25.12 16 6 O -0.58 -26.62 17.03 -3.95 -0.07 -26.68 16 7 N -0.59 -24.25 2.96 -771.29 -2.28 -26.53 16 8 C 0.12 4.40 4.86 87.16 0.42 4.82 16 9 C 0.13 4.96 5.53 46.93 0.26 5.22 16 10 H 0.14 4.32 8.14 -2.39 -0.02 4.30 16 11 C -0.13 -4.21 6.81 33.47 0.23 -3.98 16 12 C 0.10 4.13 5.24 46.89 0.25 4.37 16 13 H 0.12 4.83 8.09 -2.39 -0.02 4.81 16 14 C 0.19 9.84 4.77 87.16 0.42 10.25 16 15 N -0.62 -31.13 3.02 -648.54 -1.96 -33.09 16 16 C -0.23 -12.65 10.37 84.03 0.87 -11.78 16 17 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 18 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16 19 N -0.96 -59.76 10.56 21.65 0.23 -59.53 16 20 Si 0.98 46.24 29.55 68.60 2.03 48.26 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 N -0.54 -16.71 8.45 -75.30 -0.64 -17.35 16 25 S 0.52 10.35 23.20 -56.49 -1.31 9.04 16 26 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.17 4.46 7.99 -2.91 -0.02 4.44 16 30 H 0.05 1.98 7.79 -2.39 -0.02 1.97 16 31 H 0.09 2.76 7.58 -2.39 -0.02 2.75 16 32 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 33 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.03 1.46 7.46 -2.39 -0.02 1.44 16 35 H -0.01 -0.41 7.67 -2.39 -0.02 -0.43 16 36 H 0.24 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -76.11 312.20 2.10 -74.02 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.10 Total: 8.52 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: 5.00 Total: 23.35 kcal Atomic # 7 Polarization: -131.85 SS G_CDS: -4.65 Total: -136.50 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.07 Total: -26.68 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 16 Polarization: 10.35 SS G_CDS: -1.31 Total: 9.04 kcal Total: -76.11 2.10 -74.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032375651.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.156 kcal (2) G-P(sol) polarization free energy of solvation -76.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds