Wall clock time and date at job start Tue Mar 31 2020 06:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99712 * 2 1 4 4 H 1.48498 * 109.47142 * 240.00340 * 3 2 1 5 5 H 1.48505 * 109.47490 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47293 * 120.00440 * 3 2 1 7 7 C 1.38811 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99789 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99778 * 359.97438 * 7 2 1 10 10 C 1.47869 * 126.94823 * 0.04395 * 9 7 2 11 11 C 1.56019 * 105.10550 * 181.96668 * 10 9 7 12 12 H 1.08998 * 116.24579 * 159.67892 * 11 10 9 13 13 C 1.57084 * 99.60544 * 32.80701 * 11 10 9 14 14 C 1.49296 * 126.94151 * 180.02562 * 9 7 2 15 15 H 1.08998 * 116.15181 * 15.87346 * 14 9 7 16 16 C 1.56020 * 104.08857 * 246.72977 * 14 9 7 17 17 N 1.47870 * 105.10881 * 288.76568 * 16 14 9 18 18 C 1.34765 * 126.94601 * 181.97955 * 17 16 14 19 19 O 1.21282 * 120.00171 * 180.02562 * 18 17 16 20 20 C 1.50706 * 120.00292 * 0.02791 * 18 17 16 21 21 C 1.50693 * 109.47172 * 179.97438 * 20 18 17 22 22 C 1.33645 * 126.03835 * 90.00117 * 21 20 18 23 23 N 1.31781 * 114.50191 * 179.97438 * 22 21 20 24 24 C 1.29026 * 117.12642 * 0.02562 * 23 22 21 25 25 S 1.70977 * 110.16614 * 359.72552 * 24 23 22 26 26 H 0.96997 * 120.00180 * 359.97438 * 1 2 3 27 27 H 1.08999 * 110.31728 * 300.87298 * 10 9 7 28 28 H 1.09001 * 110.31344 * 63.06059 * 10 9 7 29 29 H 1.09004 * 112.36733 * 191.71373 * 13 11 10 30 30 H 1.08995 * 112.36895 * 64.27368 * 13 11 10 31 31 H 1.08999 * 110.31874 * 47.67600 * 16 14 9 32 32 H 1.09000 * 110.31203 * 169.85667 * 16 14 9 33 33 H 1.08994 * 109.47027 * 299.99931 * 20 18 17 34 34 H 1.08995 * 109.46730 * 59.99843 * 20 18 17 35 35 H 1.08005 * 122.74679 * 359.97438 * 22 21 20 36 36 H 1.07999 * 124.91788 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1422 -2.5669 -0.0009 11 6 -0.3637 -4.1104 0.0510 12 1 -1.3411 -4.4457 0.3978 13 6 0.8840 -4.5255 0.9104 14 6 1.9104 -3.7617 -0.0005 15 1 2.9644 -3.8351 0.2671 16 6 1.5091 -4.3453 -1.3907 17 7 0.0523 -4.5833 -1.3028 18 6 -0.7398 -5.1183 -2.2528 19 8 -1.9268 -5.2565 -2.0455 20 6 -0.1508 -5.5450 -3.5727 21 6 -1.2393 -6.1069 -4.4504 22 6 -1.9926 -5.4140 -5.3098 23 7 -2.8797 -6.1360 -5.9643 24 6 -2.9171 -7.3993 -5.7045 25 16 -1.7389 -7.7947 -4.5302 26 1 -0.4850 0.8400 0.0004 27 1 -0.5816 -2.0919 0.8762 28 1 -0.5736 -2.1531 -0.9124 29 1 1.0491 -5.6029 0.9083 30 1 0.8449 -4.1198 1.9213 31 1 1.7281 -3.6267 -2.1804 32 1 2.0352 -5.2821 -1.5740 33 1 0.3036 -4.6841 -4.0630 34 1 0.6082 -6.3084 -3.4020 35 1 -1.8832 -4.3495 -5.4559 36 1 -3.5919 -8.1055 -6.1652 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032460730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:50 Heat of formation + Delta-G solvation = 74.351345 kcal Electronic energy + Delta-G solvation = -21201.985638 eV Core-core repulsion = 18008.121748 eV Total energy + Delta-G solvation = -3193.863890 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.21319 -39.54067 -37.86810 -33.68375 -32.79499 -31.46933 -29.20999 -28.61996 -27.56699 -25.25925 -24.68850 -23.37675 -20.93145 -20.03377 -19.86329 -18.58659 -17.95840 -17.29480 -16.37802 -15.98711 -15.37953 -15.18003 -14.59423 -14.18094 -13.96898 -13.85524 -13.46936 -13.35126 -12.87263 -12.32307 -12.21603 -11.93386 -11.70384 -11.36635 -11.24193 -11.05465 -10.89798 -10.82041 -10.65390 -10.30900 -10.13377 -9.72619 -9.67870 -9.64612 -9.23467 -8.91817 -8.73105 -8.06413 -6.97622 -5.80517 -3.15677 0.67488 1.32831 1.70974 2.81851 2.95838 3.34845 3.38347 3.39380 3.41694 4.30088 4.38376 4.68624 4.80347 5.00158 5.11615 5.14041 5.22240 5.32305 5.44844 5.51518 5.57984 5.70614 5.72610 5.86403 6.10094 6.14770 6.23420 6.35437 6.43311 6.54543 6.63183 7.37893 7.44028 7.67095 7.67673 8.01726 8.06461 8.50953 9.06009 9.67068 10.35684 11.31392 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025659 B = 0.003926 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.957987 B = 7130.585235 C = 7640.052081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.235 4.235 8 H 0.080 0.920 9 N -0.597 5.597 10 C 0.174 3.826 11 C 0.099 3.901 12 H 0.113 0.887 13 C -0.150 4.150 14 C 0.141 3.859 15 H 0.107 0.893 16 C 0.081 3.919 17 N -0.606 5.606 18 C 0.528 3.472 19 O -0.546 6.546 20 C -0.061 4.061 21 C -0.187 4.187 22 C 0.040 3.960 23 N -0.469 5.469 24 C 0.010 3.990 25 S 0.124 5.876 26 H 0.255 0.745 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.175 0.825 36 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 -15.542 -6.493 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.363 4.363 8 H 0.098 0.902 9 N -0.322 5.322 10 C 0.049 3.951 11 C -0.004 4.004 12 H 0.131 0.869 13 C -0.190 4.190 14 C 0.032 3.968 15 H 0.125 0.875 16 C -0.045 4.045 17 N -0.339 5.339 18 C 0.315 3.685 19 O -0.424 6.424 20 C -0.103 4.103 21 C -0.308 4.308 22 C -0.110 4.110 23 N -0.182 5.182 24 C -0.287 4.287 25 S 0.376 5.624 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.192 0.808 36 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 0.561 -16.066 -6.409 17.306 hybrid contribution 0.437 1.882 -0.253 1.948 sum 0.999 -14.184 -6.662 15.702 Atomic orbital electron populations 1.69903 1.04972 1.25518 1.56140 1.24822 0.95669 0.97742 1.01890 0.86196 0.78454 0.83138 0.77899 1.21130 1.21600 1.21090 1.18996 0.90377 0.82066 1.44818 0.90174 1.45244 1.01337 0.99288 1.86294 1.21930 0.84681 0.87155 1.01346 1.24358 0.97741 0.97711 0.80563 0.86888 1.24140 0.96692 0.98886 0.99270 1.23173 0.96573 0.86327 0.90739 0.87511 1.23351 0.79793 0.98929 1.02380 1.49209 1.09478 1.59853 1.15393 1.19860 0.86272 0.77883 0.84476 1.90696 1.15173 1.56321 1.80246 1.20032 0.95225 1.02494 0.92570 1.25346 1.05278 0.95803 1.04395 1.21715 0.92710 1.01402 0.95192 1.66292 1.21273 1.04751 1.25867 1.28285 1.03294 0.96034 1.01109 1.83853 1.31492 1.08402 1.38607 0.93475 0.92623 0.93464 0.91647 0.89737 0.90934 0.92747 0.86775 0.87947 0.80816 0.78656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.43 10.56 55.49 0.59 -25.85 16 2 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 3 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.09 10.37 -15.06 -0.16 -6.25 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -13.93 3.02 -156.35 -0.47 -14.40 16 10 C 0.17 4.09 4.76 -1.68 -0.01 4.08 16 11 C 0.10 1.86 5.24 -62.54 -0.33 1.53 16 12 H 0.11 2.11 8.05 -51.93 -0.42 1.69 16 13 C -0.15 -2.44 6.81 -22.32 -0.15 -2.59 16 14 C 0.14 2.47 5.53 -62.56 -0.35 2.13 16 15 H 0.11 1.67 8.14 -51.93 -0.42 1.24 16 16 C 0.08 1.27 6.01 -1.67 -0.01 1.26 16 17 N -0.61 -10.59 2.95 -156.77 -0.46 -11.05 16 18 C 0.53 9.15 7.89 -10.99 -0.09 9.07 16 19 O -0.55 -11.40 16.38 5.56 0.09 -11.30 16 20 C -0.06 -0.79 5.52 -29.04 -0.16 -0.95 16 21 C -0.19 -2.52 5.09 -35.92 -0.18 -2.70 16 22 C 0.04 0.58 11.25 -19.18 -0.22 0.36 16 23 N -0.47 -6.68 10.54 -15.75 -0.17 -6.85 16 24 C 0.01 0.12 12.23 51.58 0.63 0.75 16 25 S 0.12 1.40 23.22 -107.50 -2.50 -1.10 16 26 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.06 1.45 7.46 -51.93 -0.39 1.06 16 28 H 0.05 1.28 7.68 -51.93 -0.40 0.88 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.17 2.31 8.06 -52.48 -0.42 1.89 16 36 H 0.20 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 316.17 15.07 4.76 4.76 Total: -1.00 -32.62 316.17 -8.84 -41.46 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.55 Total: 1.52 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -1.11 Total: 6.47 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.51 Total: -58.14 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.50 Total: -1.10 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.62 -8.84 -41.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032460730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.816 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds