Wall clock time and date at job start Tue Mar 31 2020 06:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99712 * 2 1 4 4 H 1.48498 * 109.47142 * 240.00340 * 3 2 1 5 5 H 1.48505 * 109.47490 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47293 * 120.00440 * 3 2 1 7 7 C 1.38811 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99789 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99778 * 359.97438 * 7 2 1 10 10 C 1.47869 * 126.94823 * 0.04395 * 9 7 2 11 11 C 1.56019 * 105.10550 * 181.96668 * 10 9 7 12 12 H 1.08998 * 116.24579 * 159.67892 * 11 10 9 13 13 C 1.57084 * 99.60544 * 32.80701 * 11 10 9 14 14 C 1.49296 * 126.94151 * 180.02562 * 9 7 2 15 15 H 1.08998 * 116.15181 * 15.87346 * 14 9 7 16 16 C 1.56020 * 104.08857 * 246.72977 * 14 9 7 17 17 N 1.47870 * 105.10881 * 288.76568 * 16 14 9 18 18 C 1.34765 * 126.94601 * 181.97955 * 17 16 14 19 19 O 1.21282 * 120.00171 * 180.02562 * 18 17 16 20 20 C 1.50706 * 120.00292 * 0.02791 * 18 17 16 21 21 C 1.50693 * 109.47172 * 179.97438 * 20 18 17 22 22 C 1.33645 * 126.03835 * 90.00117 * 21 20 18 23 23 N 1.31781 * 114.50191 * 179.97438 * 22 21 20 24 24 C 1.29026 * 117.12642 * 0.02562 * 23 22 21 25 25 S 1.70977 * 110.16614 * 359.72552 * 24 23 22 26 26 H 0.96997 * 120.00180 * 359.97438 * 1 2 3 27 27 H 1.08999 * 110.31728 * 300.87298 * 10 9 7 28 28 H 1.09001 * 110.31344 * 63.06059 * 10 9 7 29 29 H 1.09004 * 112.36733 * 191.71373 * 13 11 10 30 30 H 1.08995 * 112.36895 * 64.27368 * 13 11 10 31 31 H 1.08999 * 110.31874 * 47.67600 * 16 14 9 32 32 H 1.09000 * 110.31203 * 169.85667 * 16 14 9 33 33 H 1.08994 * 109.47027 * 299.99931 * 20 18 17 34 34 H 1.08995 * 109.46730 * 59.99843 * 20 18 17 35 35 H 1.08005 * 122.74679 * 359.97438 * 22 21 20 36 36 H 1.07999 * 124.91788 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1422 -2.5669 -0.0009 11 6 -0.3637 -4.1104 0.0510 12 1 -1.3411 -4.4457 0.3978 13 6 0.8840 -4.5255 0.9104 14 6 1.9104 -3.7617 -0.0005 15 1 2.9644 -3.8351 0.2671 16 6 1.5091 -4.3453 -1.3907 17 7 0.0523 -4.5833 -1.3028 18 6 -0.7398 -5.1183 -2.2528 19 8 -1.9268 -5.2565 -2.0455 20 6 -0.1508 -5.5450 -3.5727 21 6 -1.2393 -6.1069 -4.4504 22 6 -1.9926 -5.4140 -5.3098 23 7 -2.8797 -6.1360 -5.9643 24 6 -2.9171 -7.3993 -5.7045 25 16 -1.7389 -7.7947 -4.5302 26 1 -0.4850 0.8400 0.0004 27 1 -0.5816 -2.0919 0.8762 28 1 -0.5736 -2.1531 -0.9124 29 1 1.0491 -5.6029 0.9083 30 1 0.8449 -4.1198 1.9213 31 1 1.7281 -3.6267 -2.1804 32 1 2.0352 -5.2821 -1.5740 33 1 0.3036 -4.6841 -4.0630 34 1 0.6082 -6.3084 -3.4020 35 1 -1.8832 -4.3495 -5.4559 36 1 -3.5919 -8.1055 -6.1652 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032460730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:49 Heat of formation + Delta-G solvation = 52.644777 kcal Electronic energy + Delta-G solvation = -21202.926906 eV Core-core repulsion = 18008.121748 eV Total energy + Delta-G solvation = -3194.805157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.61791 -40.59759 -39.29677 -35.45144 -33.99572 -33.05633 -30.79429 -30.22900 -28.63685 -26.96237 -25.81549 -24.91244 -22.37354 -21.41796 -21.04486 -20.05496 -19.05107 -18.77855 -17.94067 -17.42515 -16.65933 -16.52685 -16.08159 -15.73842 -15.19087 -14.96901 -14.84185 -14.70954 -14.03809 -13.74022 -13.58187 -13.34147 -13.28776 -13.07720 -12.82216 -12.66538 -12.30638 -12.20497 -12.15920 -12.07937 -11.85957 -11.51571 -11.06615 -10.72510 -10.64175 -10.19656 -9.86853 -9.52669 -8.90121 -7.83832 -5.19611 -0.26916 0.43129 0.77999 1.47539 1.50005 1.56197 1.62041 1.78268 2.10705 2.49433 3.34315 3.38774 3.41931 3.61790 3.73749 3.88509 3.92120 4.04939 4.09334 4.22975 4.36616 4.49056 4.62520 4.71931 4.75328 4.85367 4.96900 5.03948 5.14483 5.16787 5.27073 5.46278 5.53934 5.66091 6.10692 6.67208 6.72986 7.03458 7.15719 7.72265 8.42465 9.27062 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025659 B = 0.003926 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.957987 B = 7130.585235 C = 7640.052081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.071 4.071 3 Si 0.976 3.024 4 H -0.275 1.275 5 H -0.305 1.305 6 H -0.274 1.274 7 C -0.230 4.230 8 H 0.097 0.903 9 N -0.618 5.618 10 C 0.187 3.813 11 C 0.101 3.899 12 H 0.109 0.891 13 C -0.128 4.128 14 C 0.134 3.866 15 H 0.137 0.863 16 C 0.088 3.912 17 N -0.609 5.609 18 C 0.522 3.478 19 O -0.589 6.589 20 C -0.050 4.050 21 C -0.210 4.210 22 C 0.022 3.978 23 N -0.504 5.504 24 C 0.013 3.987 25 S 0.168 5.832 26 H 0.243 0.757 27 H 0.014 0.986 28 H -0.005 1.005 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.138 0.862 35 H 0.169 0.831 36 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.827 -18.471 -6.902 20.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.201 1.201 5 H -0.232 1.232 6 H -0.200 1.200 7 C -0.359 4.359 8 H 0.115 0.885 9 N -0.342 5.342 10 C 0.061 3.939 11 C -0.003 4.003 12 H 0.127 0.873 13 C -0.167 4.167 14 C 0.028 3.972 15 H 0.155 0.845 16 C -0.036 4.036 17 N -0.342 5.342 18 C 0.312 3.688 19 O -0.470 6.470 20 C -0.092 4.092 21 C -0.332 4.332 22 C -0.129 4.129 23 N -0.218 5.218 24 C -0.283 4.283 25 S 0.421 5.579 26 H 0.052 0.948 27 H 0.032 0.968 28 H 0.014 0.986 29 H 0.124 0.876 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.142 0.858 34 H 0.156 0.844 35 H 0.186 0.814 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.043 -19.051 -6.824 20.464 hybrid contribution -0.338 2.694 -0.130 2.718 sum 2.705 -16.357 -6.954 17.979 Atomic orbital electron populations 1.70160 1.06666 1.25145 1.58820 1.25651 0.96322 1.01194 1.03197 0.85181 0.76987 0.78948 0.78395 1.20133 1.23196 1.19966 1.19516 0.91306 0.83124 1.41921 0.88510 1.45508 1.01384 1.01211 1.86127 1.21510 0.85073 0.90348 0.96971 1.24133 0.99230 0.94081 0.82814 0.87268 1.24037 0.93719 1.00950 0.97975 1.23631 0.98247 0.83064 0.92279 0.84522 1.23295 0.78856 1.01078 1.00344 1.49294 1.10452 1.59574 1.14847 1.20658 0.85749 0.76956 0.85465 1.90673 1.17127 1.58059 1.81122 1.20032 0.95546 1.03920 0.89656 1.25511 1.05678 0.97478 1.04488 1.21814 0.93389 1.01640 0.96055 1.66310 1.22205 1.06101 1.27223 1.28951 1.03219 0.95706 1.00457 1.83633 1.30542 1.06138 1.37601 0.94825 0.96793 0.98642 0.87638 0.90406 0.92430 0.87272 0.85756 0.84369 0.81431 0.75179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.27 10.56 21.65 0.23 -58.04 16 2 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 3 Si 0.98 44.73 29.55 68.60 2.03 46.76 16 4 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.31 -14.58 7.11 99.48 0.71 -13.87 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.23 -11.91 10.37 84.03 0.87 -11.03 16 8 H 0.10 4.58 7.83 -2.91 -0.02 4.56 16 9 N -0.62 -28.76 3.02 -648.58 -1.96 -30.71 16 10 C 0.19 9.21 4.76 87.16 0.42 9.63 16 11 C 0.10 3.78 5.24 46.93 0.25 4.03 16 12 H 0.11 4.16 8.05 -2.39 -0.02 4.14 16 13 C -0.13 -3.77 6.81 33.45 0.23 -3.55 16 14 C 0.13 4.29 5.53 46.92 0.26 4.55 16 15 H 0.14 3.60 8.14 -2.39 -0.02 3.58 16 16 C 0.09 2.46 6.01 87.16 0.52 2.98 16 17 N -0.61 -20.28 2.95 -768.28 -2.26 -22.55 16 18 C 0.52 17.47 7.89 87.66 0.69 18.16 16 19 O -0.59 -24.62 16.38 -3.04 -0.05 -24.67 16 20 C -0.05 -1.17 5.52 29.10 0.16 -1.01 16 21 C -0.21 -5.35 5.09 24.64 0.13 -5.22 16 22 C 0.02 0.62 11.25 83.66 0.94 1.56 16 23 N -0.50 -14.04 10.54 -203.74 -2.15 -16.19 16 24 C 0.01 0.27 12.23 130.65 1.60 1.87 16 25 S 0.17 3.34 23.22 -56.49 -1.31 2.03 16 26 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 27 H 0.01 0.78 7.46 -2.39 -0.02 0.77 16 28 H 0.00 -0.27 7.68 -2.39 -0.02 -0.29 16 29 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.17 4.68 8.06 -2.91 -0.02 4.65 16 36 H 0.23 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -76.07 316.17 2.14 -73.93 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 1.09 Total: 10.96 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 6.53 Total: 18.49 kcal Atomic # 7 Polarization: -121.35 SS G_CDS: -6.14 Total: -127.49 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.05 Total: -24.67 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -1.31 Total: 2.03 kcal Total: -76.07 2.14 -73.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032460730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.577 kcal (2) G-P(sol) polarization free energy of solvation -76.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds