Wall clock time and date at job start Tue Mar 31 2020 06:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99766 * 2 1 4 4 H 1.48501 * 109.47295 * 239.99727 * 3 2 1 5 5 H 1.48498 * 109.47074 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47193 * 119.99871 * 3 2 1 7 7 C 1.38810 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99839 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00527 * 0.02562 * 7 2 1 10 10 C 1.46640 * 125.32680 * 0.02562 * 9 7 2 11 11 C 1.53683 * 108.01057 * 180.81555 * 10 9 7 12 12 H 1.08999 * 113.05907 * 253.80831 * 11 10 9 13 13 C 1.53725 * 109.34270 * 127.55670 * 11 10 9 14 14 N 1.46663 * 107.94400 * 266.25881 * 13 11 10 15 15 C 1.34783 * 125.33869 * 180.54732 * 14 13 11 16 16 O 1.21632 * 119.99536 * 359.97438 * 15 14 13 17 17 C 1.47100 * 120.00251 * 179.97438 * 15 14 13 18 18 C 1.38382 * 127.99726 * 179.97438 * 17 15 14 19 19 C 1.37576 * 111.26193 * 179.74961 * 18 17 15 20 20 N 1.29563 * 117.94892 * 0.23014 * 19 18 17 21 21 S 1.56306 * 110.37943 * 0.02562 * 20 19 18 22 22 C 1.46770 * 109.32764 * 0.80444 * 14 13 11 23 23 C 1.54170 * 106.52248 * 341.09313 * 22 14 13 24 24 H 1.09002 * 113.83152 * 265.68110 * 23 22 14 25 25 C 1.46746 * 125.33091 * 180.02562 * 9 7 2 26 26 H 0.96997 * 120.00603 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.75861 * 61.17644 * 10 9 7 28 28 H 1.09005 * 109.76328 * 300.46197 * 10 9 7 29 29 H 1.08997 * 109.77217 * 146.62950 * 13 11 10 30 30 H 1.08999 * 109.77007 * 25.87641 * 13 11 10 31 31 H 1.08002 * 124.37227 * 0.02562 * 18 17 15 32 32 H 1.07997 * 121.02960 * 180.21305 * 19 18 17 33 33 H 1.08990 * 110.02879 * 100.50810 * 22 14 13 34 34 H 1.09001 * 110.03270 * 221.93490 * 22 14 13 35 35 H 1.09000 * 110.00846 * 42.36104 * 25 9 7 36 36 H 1.09002 * 110.00389 * 280.99309 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1344 -2.5243 -0.0005 11 6 -0.4718 -4.0235 0.0207 12 1 -0.8363 -4.3927 -0.9379 13 6 -1.4485 -4.3094 1.1728 14 7 -0.6614 -4.7114 2.3432 15 6 -1.1690 -5.0525 3.5443 16 8 -2.3723 -5.0409 3.7214 17 6 -0.2678 -5.4386 4.6410 18 6 -0.6059 -5.8151 5.9289 19 6 0.5133 -6.1108 6.6723 20 7 1.6700 -5.9986 6.0993 21 16 1.5005 -5.5269 4.6188 22 6 0.7660 -4.6783 2.0034 23 6 0.8511 -4.7080 0.4643 24 1 0.9784 -5.7080 0.0496 25 6 1.9382 -3.7216 0.0016 26 1 -0.4851 0.8400 -0.0004 27 1 -0.5466 -2.0665 -0.8999 28 1 -0.5504 -2.0404 0.8832 29 1 -2.1266 -5.1145 0.8901 30 1 -2.0196 -3.4101 1.4037 31 1 -1.6180 -5.8739 6.3012 32 1 0.4305 -6.4266 7.7017 33 1 1.2200 -3.7649 2.3875 34 1 1.2696 -5.5501 2.4209 35 1 2.7811 -3.7443 0.6924 36 1 2.2722 -3.9793 -1.0035 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048850270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:06 Heat of formation + Delta-G solvation = 49.390257 kcal Electronic energy + Delta-G solvation = -21483.487956 eV Core-core repulsion = 18288.541672 eV Total energy + Delta-G solvation = -3194.946284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.30827 -39.30850 -38.03293 -35.04061 -32.44884 -31.73292 -30.29258 -29.54171 -26.62279 -25.65806 -25.16521 -23.24224 -21.52603 -20.21415 -19.51583 -19.23916 -18.37955 -16.95936 -16.59105 -16.36044 -15.64021 -15.01823 -14.62024 -14.48202 -14.25032 -13.73925 -13.45433 -13.21713 -12.97718 -12.78796 -12.20975 -12.18176 -11.63758 -11.56878 -11.33869 -10.94949 -10.87992 -10.68117 -10.51683 -10.16501 -10.13279 -9.97486 -9.88626 -9.78236 -9.69628 -8.92923 -8.65323 -8.47488 -6.89765 -5.77246 -3.11517 0.23792 1.21027 1.82319 2.13449 2.97347 3.14026 3.37615 3.42329 3.43645 4.36208 4.45234 4.67552 4.85412 4.90784 5.02106 5.14240 5.42980 5.45571 5.49543 5.55568 5.61745 5.70969 5.73591 5.88257 6.07212 6.17629 6.26149 6.38266 6.42624 6.48903 6.53914 6.72312 7.47388 7.50711 7.56467 7.75980 8.11647 8.21009 9.16534 9.77019 10.39742 11.34150 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.004882 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.403128 B = 5733.628713 C = 6174.972024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.233 4.233 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.183 3.817 11 C -0.123 4.123 12 H 0.095 0.905 13 C 0.122 3.878 14 N -0.599 5.599 15 C 0.606 3.394 16 O -0.532 6.532 17 C -0.262 4.262 18 C -0.116 4.116 19 C 0.056 3.944 20 N -0.539 5.539 21 S 0.440 5.560 22 C 0.101 3.899 23 C -0.107 4.107 24 H 0.094 0.906 25 C 0.144 3.856 26 H 0.254 0.746 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.174 0.826 32 H 0.179 0.821 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.040 0.960 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.526 -13.328 6.672 14.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.201 4.201 3 Si 0.742 3.258 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.361 4.361 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.058 3.942 11 C -0.142 4.142 12 H 0.113 0.887 13 C 0.000 4.000 14 N -0.331 5.331 15 C 0.393 3.607 16 O -0.410 6.410 17 C -0.395 4.395 18 C -0.152 4.152 19 C -0.136 4.136 20 N -0.368 5.368 21 S 0.596 5.404 22 C -0.024 4.024 23 C -0.127 4.127 24 H 0.112 0.888 25 C 0.017 3.983 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.191 0.809 32 H 0.196 0.804 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.919 -13.030 6.275 14.589 hybrid contribution -1.206 0.752 0.946 1.708 sum 0.712 -12.277 7.221 14.261 Atomic orbital electron populations 1.69932 1.04888 1.25319 1.56659 1.24795 0.95698 0.97720 1.01926 0.86207 0.78480 0.83184 0.77918 1.21107 1.21595 1.21158 1.18980 0.90436 0.82239 1.44414 0.90344 1.44204 1.01434 0.99929 1.87338 1.21145 0.84643 0.86663 1.01730 1.23193 0.93605 1.00595 0.96849 0.88699 1.21902 0.93884 1.00251 0.83928 1.48088 1.08596 1.65498 1.10931 1.16286 0.86491 0.77798 0.80132 1.90808 1.14160 1.54380 1.81643 1.26843 1.01419 1.11743 0.99529 1.22078 1.01821 0.99753 0.91566 1.22207 0.85686 1.02759 1.02904 1.72123 1.30583 1.22277 1.11840 1.82233 0.98799 1.52855 1.06554 1.22381 0.81208 1.01816 0.96969 1.22925 0.97595 0.99589 0.92575 0.88751 1.21187 0.93634 0.85659 0.97781 0.93586 0.93548 0.92988 0.91768 0.90332 0.80893 0.80426 0.89230 0.91674 0.94191 0.95922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.14 10.25 55.49 0.57 -25.57 16 2 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 3 Si 0.91 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.13 10.25 -15.06 -0.15 -6.28 16 8 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 9 N -0.60 -14.17 3.37 -171.94 -0.58 -14.74 16 10 C 0.18 4.10 4.75 -3.61 -0.02 4.08 16 11 C -0.12 -2.04 4.02 -88.61 -0.36 -2.40 16 12 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 13 C 0.12 1.99 6.23 -3.58 -0.02 1.97 16 14 N -0.60 -9.69 3.31 -173.56 -0.57 -10.27 16 15 C 0.61 10.13 7.82 -12.66 -0.10 10.03 16 16 O -0.53 -10.28 17.27 5.25 0.09 -10.18 16 17 C -0.26 -3.67 6.62 -35.94 -0.24 -3.91 16 18 C -0.12 -1.37 10.40 -39.77 -0.41 -1.78 16 19 C 0.06 0.61 11.15 -18.75 -0.21 0.40 16 20 N -0.54 -6.91 11.29 21.64 0.24 -6.67 16 21 S 0.44 5.49 19.36 -107.50 -2.08 3.41 16 22 C 0.10 1.49 4.73 -3.28 -0.02 1.48 16 23 C -0.11 -1.60 4.19 -88.25 -0.37 -1.97 16 24 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 25 C 0.14 2.62 6.37 -3.43 -0.02 2.60 16 26 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.05 1.17 7.46 -51.92 -0.39 0.78 16 28 H 0.05 1.33 6.50 -51.93 -0.34 0.99 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.42 7.44 -51.93 -0.39 1.04 16 31 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.09 1.52 7.68 -51.93 -0.40 1.12 16 34 H 0.07 0.80 5.50 -37.27 -0.20 0.60 16 35 H 0.04 0.69 7.94 -51.93 -0.41 0.28 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 305.08 15.07 4.60 4.60 Total: -1.00 -31.43 305.08 -8.98 -40.41 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -4.21 Total: -1.47 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -2.01 Total: 3.99 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.34 Total: -57.25 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 5.49 SS G_CDS: -2.08 Total: 3.41 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.43 -8.98 -40.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048850270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.804 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds