Wall clock time and date at job start Tue Mar 31 2020 06:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99766 * 2 1 4 4 H 1.48501 * 109.47295 * 239.99727 * 3 2 1 5 5 H 1.48498 * 109.47074 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47193 * 119.99871 * 3 2 1 7 7 C 1.38810 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99839 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00527 * 0.02562 * 7 2 1 10 10 C 1.46640 * 125.32680 * 0.02562 * 9 7 2 11 11 C 1.53683 * 108.01057 * 180.81555 * 10 9 7 12 12 H 1.08999 * 113.05907 * 253.80831 * 11 10 9 13 13 C 1.53725 * 109.34270 * 127.55670 * 11 10 9 14 14 N 1.46663 * 107.94400 * 266.25881 * 13 11 10 15 15 C 1.34783 * 125.33869 * 180.54732 * 14 13 11 16 16 O 1.21632 * 119.99536 * 359.97438 * 15 14 13 17 17 C 1.47100 * 120.00251 * 179.97438 * 15 14 13 18 18 C 1.38382 * 127.99726 * 179.97438 * 17 15 14 19 19 C 1.37576 * 111.26193 * 179.74961 * 18 17 15 20 20 N 1.29563 * 117.94892 * 0.23014 * 19 18 17 21 21 S 1.56306 * 110.37943 * 0.02562 * 20 19 18 22 22 C 1.46770 * 109.32764 * 0.80444 * 14 13 11 23 23 C 1.54170 * 106.52248 * 341.09313 * 22 14 13 24 24 H 1.09002 * 113.83152 * 265.68110 * 23 22 14 25 25 C 1.46746 * 125.33091 * 180.02562 * 9 7 2 26 26 H 0.96997 * 120.00603 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.75861 * 61.17644 * 10 9 7 28 28 H 1.09005 * 109.76328 * 300.46197 * 10 9 7 29 29 H 1.08997 * 109.77217 * 146.62950 * 13 11 10 30 30 H 1.08999 * 109.77007 * 25.87641 * 13 11 10 31 31 H 1.08002 * 124.37227 * 0.02562 * 18 17 15 32 32 H 1.07997 * 121.02960 * 180.21305 * 19 18 17 33 33 H 1.08990 * 110.02879 * 100.50810 * 22 14 13 34 34 H 1.09001 * 110.03270 * 221.93490 * 22 14 13 35 35 H 1.09000 * 110.00846 * 42.36104 * 25 9 7 36 36 H 1.09002 * 110.00389 * 280.99309 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1344 -2.5243 -0.0005 11 6 -0.4718 -4.0235 0.0207 12 1 -0.8363 -4.3927 -0.9379 13 6 -1.4485 -4.3094 1.1728 14 7 -0.6614 -4.7114 2.3432 15 6 -1.1690 -5.0525 3.5443 16 8 -2.3723 -5.0409 3.7214 17 6 -0.2678 -5.4386 4.6410 18 6 -0.6059 -5.8151 5.9289 19 6 0.5133 -6.1108 6.6723 20 7 1.6700 -5.9986 6.0993 21 16 1.5005 -5.5269 4.6188 22 6 0.7660 -4.6783 2.0034 23 6 0.8511 -4.7080 0.4643 24 1 0.9784 -5.7080 0.0496 25 6 1.9382 -3.7216 0.0016 26 1 -0.4851 0.8400 -0.0004 27 1 -0.5466 -2.0665 -0.8999 28 1 -0.5504 -2.0404 0.8832 29 1 -2.1266 -5.1145 0.8901 30 1 -2.0196 -3.4101 1.4037 31 1 -1.6180 -5.8739 6.3012 32 1 0.4305 -6.4266 7.7017 33 1 1.2200 -3.7649 2.3875 34 1 1.2696 -5.5501 2.4209 35 1 2.7811 -3.7443 0.6924 36 1 2.2722 -3.9793 -1.0035 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048850270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:06 Heat of formation + Delta-G solvation = 28.444880 kcal Electronic energy + Delta-G solvation = -21484.396215 eV Core-core repulsion = 18288.541672 eV Total energy + Delta-G solvation = -3195.854543 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.62542 -40.35094 -39.35941 -36.62997 -34.17933 -32.92405 -31.64756 -31.15662 -27.98648 -27.12385 -26.63264 -24.64951 -22.68259 -21.83690 -20.86171 -20.36410 -19.56392 -18.74879 -17.71728 -17.65252 -16.91056 -16.63344 -16.05927 -15.71139 -15.41976 -15.37720 -14.74540 -14.41468 -14.29296 -14.24534 -13.67827 -13.54926 -13.30583 -13.10514 -12.73984 -12.68583 -12.37501 -12.01788 -11.91760 -11.86728 -11.82260 -11.43607 -11.29274 -11.20825 -10.82342 -10.65848 -9.89140 -9.74434 -8.83769 -7.82465 -5.16712 -0.77964 0.22056 0.87703 1.19777 1.47452 1.49449 1.55639 1.75683 1.95300 2.51696 3.16664 3.35158 3.44578 3.62997 3.83469 3.94498 4.01266 4.06436 4.16355 4.28088 4.45584 4.52788 4.66766 4.71465 4.84672 4.87788 4.90360 5.06049 5.08189 5.15591 5.38981 5.50608 5.51979 5.66709 5.81110 6.24546 6.27834 6.84026 7.14590 7.84223 8.44630 9.27377 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.004882 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.403128 B = 5733.628713 C = 6174.972024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.065 4.065 3 Si 0.972 3.028 4 H -0.275 1.275 5 H -0.300 1.300 6 H -0.279 1.279 7 C -0.236 4.236 8 H 0.087 0.913 9 N -0.624 5.624 10 C 0.195 3.805 11 C -0.110 4.110 12 H 0.122 0.878 13 C 0.125 3.875 14 N -0.602 5.602 15 C 0.604 3.396 16 O -0.567 6.567 17 C -0.293 4.293 18 C -0.103 4.103 19 C 0.065 3.935 20 N -0.553 5.553 21 S 0.448 5.552 22 C 0.103 3.897 23 C -0.089 4.089 24 H 0.143 0.857 25 C 0.137 3.863 26 H 0.244 0.756 27 H 0.007 0.993 28 H 0.008 0.992 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.189 0.811 32 H 0.217 0.783 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.970 -15.673 7.443 17.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.258 4.258 3 Si 0.801 3.199 4 H -0.201 1.201 5 H -0.226 1.226 6 H -0.205 1.205 7 C -0.365 4.365 8 H 0.105 0.895 9 N -0.350 5.350 10 C 0.070 3.930 11 C -0.130 4.130 12 H 0.140 0.860 13 C 0.003 3.997 14 N -0.334 5.334 15 C 0.392 3.608 16 O -0.448 6.448 17 C -0.426 4.426 18 C -0.139 4.139 19 C -0.126 4.126 20 N -0.382 5.382 21 S 0.605 5.395 22 C -0.021 4.021 23 C -0.109 4.109 24 H 0.160 0.840 25 C 0.011 3.989 26 H 0.053 0.947 27 H 0.025 0.975 28 H 0.026 0.974 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.206 0.794 32 H 0.233 0.767 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.425 -15.408 7.028 17.278 hybrid contribution -1.616 1.454 0.782 2.311 sum 1.809 -13.954 7.810 16.093 Atomic orbital electron populations 1.70176 1.06268 1.25072 1.58588 1.25576 0.96444 1.00888 1.02932 0.85246 0.77150 0.79281 0.78245 1.20123 1.22648 1.20481 1.19409 0.91109 0.83574 1.42425 0.89542 1.44499 1.02124 1.01353 1.87013 1.20799 0.84158 0.90284 0.97769 1.23040 0.95025 0.96515 0.98419 0.85954 1.21805 0.94028 0.99840 0.84051 1.48161 1.09105 1.65159 1.10930 1.16645 0.86467 0.77083 0.80573 1.90776 1.15723 1.56067 1.82264 1.26715 1.02171 1.13978 0.99735 1.22417 1.03012 0.97843 0.90666 1.22687 0.84543 1.01197 1.04221 1.72201 1.31386 1.22748 1.11898 1.82050 0.97495 1.52975 1.07029 1.22381 0.80540 1.02044 0.97164 1.23004 0.94706 1.00768 0.92409 0.83967 1.21434 0.94833 0.83789 0.98796 0.94692 0.97522 0.97352 0.89408 0.93349 0.79371 0.76679 0.91834 0.88542 0.93035 0.94608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.72 10.25 21.65 0.22 -56.50 16 2 C -0.07 -3.65 5.48 84.86 0.47 -3.18 16 3 Si 0.97 45.14 29.55 68.60 2.03 47.17 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.24 -12.58 10.25 84.03 0.86 -11.72 16 8 H 0.09 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.62 -29.55 3.37 -697.88 -2.35 -31.90 16 10 C 0.20 9.06 4.75 86.58 0.41 9.47 16 11 C -0.11 -3.56 4.02 -9.49 -0.04 -3.60 16 12 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 13 C 0.13 4.05 6.23 86.59 0.54 4.59 16 14 N -0.60 -19.08 3.31 -821.27 -2.72 -21.80 16 15 C 0.60 19.92 7.82 86.57 0.68 20.60 16 16 O -0.57 -22.04 17.27 -4.13 -0.07 -22.11 16 17 C -0.29 -7.81 6.62 24.63 0.16 -7.65 16 18 C -0.10 -2.19 10.40 22.15 0.23 -1.96 16 19 C 0.07 1.20 11.15 84.87 0.95 2.15 16 20 N -0.55 -12.72 11.29 -85.46 -0.96 -13.68 16 21 S 0.45 10.32 19.36 -56.49 -1.09 9.23 16 22 C 0.10 2.87 4.73 86.72 0.41 3.28 16 23 C -0.09 -2.41 4.19 -9.26 -0.04 -2.45 16 24 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 25 C 0.14 4.69 6.37 86.64 0.55 5.24 16 26 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 27 H 0.01 0.35 7.46 -2.38 -0.02 0.33 16 28 H 0.01 0.45 6.50 -2.38 -0.02 0.44 16 29 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.05 1.86 7.44 -2.39 -0.02 1.84 16 31 H 0.19 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.22 2.23 8.06 -2.91 -0.02 2.20 16 33 H 0.06 2.13 7.68 -2.39 -0.02 2.11 16 34 H 0.10 2.09 5.50 -11.71 -0.06 2.03 16 35 H 0.05 1.67 7.94 -2.39 -0.02 1.65 16 36 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -71.62 305.08 1.28 -70.34 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 1.05 Total: 4.47 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 5.18 Total: 14.78 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -5.81 Total: -123.88 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.07 Total: -22.11 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 10.32 SS G_CDS: -1.09 Total: 9.23 kcal Total: -71.62 1.28 -70.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048850270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.785 kcal (2) G-P(sol) polarization free energy of solvation -71.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds