Wall clock time and date at job start Tue Mar 31 2020 06:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00297 * 2 1 4 4 H 1.48494 * 109.47248 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47008 * 299.99981 * 3 2 1 6 6 H 1.48502 * 109.46936 * 59.99770 * 3 2 1 7 7 C 1.38814 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00018 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99711 * 0.02562 * 7 2 1 10 10 C 1.46639 * 125.33257 * 0.02562 * 9 7 2 11 11 C 1.53686 * 108.01006 * 180.81627 * 10 9 7 12 12 H 1.09003 * 113.05726 * 253.80448 * 11 10 9 13 13 C 1.53728 * 109.33939 * 127.55903 * 11 10 9 14 14 N 1.46670 * 107.94128 * 266.25236 * 13 11 10 15 15 C 1.34780 * 125.33693 * 180.54345 * 14 13 11 16 16 O 1.21569 * 119.99866 * 0.02562 * 15 14 13 17 17 C 1.47689 * 119.99857 * 180.02562 * 15 14 13 18 18 C 1.39489 * 122.10383 * 180.02562 * 17 15 14 19 19 C 1.35000 * 111.68657 * 180.24474 * 18 17 15 20 20 S 1.71765 * 105.44900 * 359.62620 * 19 18 17 21 21 N 1.30602 * 122.10480 * 359.97438 * 17 15 14 22 22 C 1.46775 * 109.32382 * 0.80731 * 14 13 11 23 23 C 1.54161 * 106.52488 * 341.09164 * 22 14 13 24 24 H 1.09000 * 113.83101 * 265.67534 * 23 22 14 25 25 C 1.46744 * 125.32569 * 179.97438 * 9 7 2 26 26 H 0.96999 * 119.99822 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.75763 * 61.17322 * 10 9 7 28 28 H 1.09003 * 109.75779 * 300.46430 * 10 9 7 29 29 H 1.09002 * 109.77561 * 146.63232 * 13 11 10 30 30 H 1.08999 * 109.77127 * 25.86927 * 13 11 10 31 31 H 1.08002 * 124.15372 * 359.97044 * 18 17 15 32 32 H 1.07996 * 127.27925 * 179.72652 * 19 18 17 33 33 H 1.09004 * 110.02757 * 100.51007 * 22 14 13 34 34 H 1.08996 * 110.02785 * 221.92375 * 22 14 13 35 35 H 1.09003 * 110.01267 * 42.36749 * 25 9 7 36 36 H 1.09000 * 110.01111 * 280.99485 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1345 -2.5243 -0.0005 11 6 -0.4719 -4.0235 0.0207 12 1 -0.8365 -4.3927 -0.9379 13 6 -1.4487 -4.3093 1.1728 14 7 -0.6616 -4.7114 2.3433 15 6 -1.1692 -5.0523 3.5444 16 8 -2.3719 -5.0414 3.7212 17 6 -0.2643 -5.4390 4.6457 18 6 -0.7419 -5.8001 5.9055 19 6 0.2643 -6.1082 6.7510 20 16 1.7057 -5.9120 5.8377 21 7 1.0334 -5.4654 4.5009 22 6 0.7659 -4.6783 2.0033 23 6 0.8509 -4.7081 0.4643 24 1 0.9783 -5.7080 0.0496 25 6 1.9381 -3.7215 0.0005 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5466 -2.0664 -0.8998 28 1 -0.5504 -2.0403 0.8832 29 1 -2.1269 -5.1144 0.8902 30 1 -2.0196 -3.4099 1.4038 31 1 -1.7880 -5.8255 6.1730 32 1 0.1807 -6.4150 7.7831 33 1 1.2200 -3.7648 2.3875 34 1 1.2694 -5.5501 2.4210 35 1 2.7814 -3.7447 0.6907 36 1 2.2713 -3.9790 -1.0049 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048885818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:52 Heat of formation + Delta-G solvation = 52.960103 kcal Electronic energy + Delta-G solvation = -21557.183095 eV Core-core repulsion = 18362.391611 eV Total energy + Delta-G solvation = -3194.791484 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.60472 -39.14850 -37.64366 -34.94372 -32.38060 -31.65189 -30.25608 -29.38539 -26.89983 -25.41879 -25.15702 -23.03690 -21.20880 -20.06994 -19.33164 -19.28725 -18.46190 -17.17953 -16.66983 -16.14683 -15.51130 -14.92931 -14.47328 -14.22215 -14.01979 -13.66413 -13.41791 -13.05662 -12.78082 -12.67114 -12.11043 -12.03285 -11.52769 -11.40871 -11.30935 -10.99564 -10.87221 -10.79466 -10.38060 -10.06318 -10.02718 -10.00336 -9.84467 -9.68560 -9.60718 -8.94811 -8.59909 -8.25903 -6.82277 -5.71755 -3.05256 0.50634 1.34181 1.72038 1.74185 3.20723 3.36074 3.39808 3.45184 3.47824 4.49431 4.52212 4.72693 4.95782 5.09300 5.18473 5.35407 5.42531 5.52135 5.63333 5.66676 5.72983 5.80893 5.99312 6.10749 6.19043 6.26279 6.34291 6.47630 6.60588 6.63509 6.68700 6.86518 7.57221 7.58690 7.74248 7.82554 8.26428 8.27674 9.22667 9.83313 10.47126 11.39905 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018545 B = 0.004732 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.511153 B = 5915.511092 C = 6392.910375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.185 3.815 11 C -0.123 4.123 12 H 0.092 0.908 13 C 0.120 3.880 14 N -0.586 5.586 15 C 0.598 3.402 16 O -0.540 6.540 17 C 0.057 3.943 18 C -0.134 4.134 19 C -0.285 4.285 20 S 0.450 5.550 21 N -0.504 5.504 22 C 0.120 3.880 23 C -0.114 4.114 24 H 0.088 0.912 25 C 0.146 3.854 26 H 0.252 0.748 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.171 0.829 32 H 0.185 0.815 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 -14.739 10.485 18.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.060 3.940 11 C -0.143 4.143 12 H 0.110 0.890 13 C -0.002 4.002 14 N -0.317 5.317 15 C 0.381 3.619 16 O -0.418 6.418 17 C -0.117 4.117 18 C -0.167 4.167 19 C -0.434 4.434 20 S 0.605 5.395 21 N -0.338 5.338 22 C -0.003 4.003 23 C -0.134 4.134 24 H 0.107 0.893 25 C 0.020 3.980 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.188 0.812 32 H 0.202 0.798 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 3.221 -14.443 10.054 17.890 hybrid contribution -1.507 0.991 0.348 1.837 sum 1.714 -13.451 10.403 17.091 Atomic orbital electron populations 1.69968 1.04875 1.24946 1.57066 1.24800 0.95705 0.97687 1.02168 0.86051 0.78713 0.83815 0.77229 1.20499 1.21733 1.21818 1.19084 0.90469 0.82311 1.43805 0.90330 1.44217 1.01498 0.99975 1.87197 1.21109 0.84602 0.86763 1.01513 1.23167 0.93931 1.00556 0.96672 0.89024 1.21906 0.93947 1.00016 0.84330 1.48069 1.09314 1.63917 1.10437 1.16814 0.86331 0.78185 0.80527 1.90780 1.14072 1.55208 1.81726 1.21169 0.88702 1.05422 0.96428 1.21386 1.02780 1.01520 0.90964 1.27158 1.00256 1.09302 1.06682 1.80606 1.12387 1.51461 0.95011 1.72714 1.12883 1.22297 1.25944 1.22282 0.80451 1.03058 0.94486 1.23018 0.97089 0.98994 0.94340 0.89342 1.21156 0.93780 0.85683 0.97400 0.93772 0.93704 0.93126 0.91989 0.90563 0.81176 0.79789 0.90271 0.89904 0.94414 0.96265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.13 10.25 55.49 0.57 -26.56 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.23 -6.32 10.25 -15.06 -0.15 -6.48 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.14 3.37 -171.92 -0.58 -15.72 16 10 C 0.18 4.43 4.75 -3.61 -0.02 4.42 16 11 C -0.12 -2.28 4.02 -88.61 -0.36 -2.63 16 12 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 13 C 0.12 2.16 6.23 -3.57 -0.02 2.14 16 14 N -0.59 -10.66 3.31 -173.33 -0.57 -11.24 16 15 C 0.60 10.87 7.83 -12.40 -0.10 10.77 16 16 O -0.54 -10.87 16.96 5.31 0.09 -10.78 16 17 C 0.06 0.87 6.60 -84.06 -0.55 0.32 16 18 C -0.13 -1.62 9.98 -40.27 -0.40 -2.02 16 19 C -0.29 -2.56 11.41 29.58 0.34 -2.22 16 20 S 0.45 4.36 23.20 -107.50 -2.49 1.87 16 21 N -0.50 -7.13 7.97 24.85 0.20 -6.93 16 22 C 0.12 2.10 5.06 -3.29 -0.02 2.08 16 23 C -0.11 -1.96 4.19 -88.23 -0.37 -2.33 16 24 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 25 C 0.15 2.95 6.37 -3.41 -0.02 2.93 16 26 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.04 1.19 7.46 -51.93 -0.39 0.81 16 28 H 0.05 1.38 6.50 -51.93 -0.34 1.04 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.50 7.44 -51.93 -0.39 1.11 16 31 H 0.17 1.92 7.99 -52.49 -0.42 1.50 16 32 H 0.18 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.08 1.62 7.72 -51.93 -0.40 1.22 16 34 H 0.08 1.32 6.30 -51.93 -0.33 0.99 16 35 H 0.04 0.74 7.95 -51.93 -0.41 0.33 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 306.22 15.07 4.61 4.61 Total: -1.00 -32.61 306.22 -9.30 -41.91 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.33 Total: -1.01 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -1.77 Total: 6.67 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -0.39 Total: -60.45 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -2.49 Total: 1.87 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.61 -9.30 -41.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048885818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.871 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds