Wall clock time and date at job start Tue Mar 31 2020 06:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00297 * 2 1 4 4 H 1.48494 * 109.47248 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47008 * 299.99981 * 3 2 1 6 6 H 1.48502 * 109.46936 * 59.99770 * 3 2 1 7 7 C 1.38814 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00018 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99711 * 0.02562 * 7 2 1 10 10 C 1.46639 * 125.33257 * 0.02562 * 9 7 2 11 11 C 1.53686 * 108.01006 * 180.81627 * 10 9 7 12 12 H 1.09003 * 113.05726 * 253.80448 * 11 10 9 13 13 C 1.53728 * 109.33939 * 127.55903 * 11 10 9 14 14 N 1.46670 * 107.94128 * 266.25236 * 13 11 10 15 15 C 1.34780 * 125.33693 * 180.54345 * 14 13 11 16 16 O 1.21569 * 119.99866 * 0.02562 * 15 14 13 17 17 C 1.47689 * 119.99857 * 180.02562 * 15 14 13 18 18 C 1.39489 * 122.10383 * 180.02562 * 17 15 14 19 19 C 1.35000 * 111.68657 * 180.24474 * 18 17 15 20 20 S 1.71765 * 105.44900 * 359.62620 * 19 18 17 21 21 N 1.30602 * 122.10480 * 359.97438 * 17 15 14 22 22 C 1.46775 * 109.32382 * 0.80731 * 14 13 11 23 23 C 1.54161 * 106.52488 * 341.09164 * 22 14 13 24 24 H 1.09000 * 113.83101 * 265.67534 * 23 22 14 25 25 C 1.46744 * 125.32569 * 179.97438 * 9 7 2 26 26 H 0.96999 * 119.99822 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.75763 * 61.17322 * 10 9 7 28 28 H 1.09003 * 109.75779 * 300.46430 * 10 9 7 29 29 H 1.09002 * 109.77561 * 146.63232 * 13 11 10 30 30 H 1.08999 * 109.77127 * 25.86927 * 13 11 10 31 31 H 1.08002 * 124.15372 * 359.97044 * 18 17 15 32 32 H 1.07996 * 127.27925 * 179.72652 * 19 18 17 33 33 H 1.09004 * 110.02757 * 100.51007 * 22 14 13 34 34 H 1.08996 * 110.02785 * 221.92375 * 22 14 13 35 35 H 1.09003 * 110.01267 * 42.36749 * 25 9 7 36 36 H 1.09000 * 110.01111 * 280.99485 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1345 -2.5243 -0.0005 11 6 -0.4719 -4.0235 0.0207 12 1 -0.8365 -4.3927 -0.9379 13 6 -1.4487 -4.3093 1.1728 14 7 -0.6616 -4.7114 2.3433 15 6 -1.1692 -5.0523 3.5444 16 8 -2.3719 -5.0414 3.7212 17 6 -0.2643 -5.4390 4.6457 18 6 -0.7419 -5.8001 5.9055 19 6 0.2643 -6.1082 6.7510 20 16 1.7057 -5.9120 5.8377 21 7 1.0334 -5.4654 4.5009 22 6 0.7659 -4.6783 2.0033 23 6 0.8509 -4.7081 0.4643 24 1 0.9783 -5.7080 0.0496 25 6 1.9381 -3.7215 0.0005 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5466 -2.0664 -0.8998 28 1 -0.5504 -2.0403 0.8832 29 1 -2.1269 -5.1144 0.8902 30 1 -2.0196 -3.4099 1.4038 31 1 -1.7880 -5.8255 6.1730 32 1 0.1807 -6.4150 7.7831 33 1 1.2200 -3.7648 2.3875 34 1 1.2694 -5.5501 2.4210 35 1 2.7814 -3.7447 0.6907 36 1 2.2713 -3.9790 -1.0049 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048885818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:51 Heat of formation + Delta-G solvation = 31.014363 kcal Electronic energy + Delta-G solvation = -21558.134734 eV Core-core repulsion = 18362.391611 eV Total energy + Delta-G solvation = -3195.743122 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.88838 -40.45380 -39.00077 -36.64822 -34.18752 -32.74298 -31.77016 -31.13137 -28.27711 -27.05031 -26.80207 -24.53918 -22.34555 -21.80517 -20.80501 -20.55226 -19.41398 -18.89703 -18.12930 -17.62481 -16.87500 -16.57328 -16.13280 -15.57586 -15.30446 -15.19586 -14.64395 -14.31758 -14.21896 -14.19898 -13.68813 -13.59402 -13.33142 -13.07566 -12.77458 -12.70471 -12.23879 -12.16015 -11.95138 -11.90940 -11.87866 -11.49691 -11.33316 -11.03040 -10.83873 -10.71308 -9.93306 -9.59838 -8.88119 -7.86002 -5.20997 -0.42849 0.55345 0.71867 0.80995 1.44108 1.44963 1.55371 1.91251 2.10100 2.48504 3.25053 3.32691 3.55131 3.65005 3.81270 3.84170 3.95062 4.27885 4.30790 4.42271 4.49453 4.55317 4.62775 4.76658 4.81158 4.85742 4.92549 5.04385 5.09216 5.11093 5.37551 5.40611 5.47314 5.62483 5.75751 6.20504 6.35868 6.89916 7.10455 7.79572 8.41149 9.24500 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018545 B = 0.004732 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.511153 B = 5915.511092 C = 6392.910375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.237 4.237 8 H 0.086 0.914 9 N -0.624 5.624 10 C 0.199 3.801 11 C -0.111 4.111 12 H 0.121 0.879 13 C 0.123 3.877 14 N -0.594 5.594 15 C 0.590 3.410 16 O -0.572 6.572 17 C 0.028 3.972 18 C -0.155 4.155 19 C -0.260 4.260 20 S 0.528 5.472 21 N -0.546 5.546 22 C 0.132 3.868 23 C -0.098 4.098 24 H 0.134 0.866 25 C 0.141 3.859 26 H 0.244 0.756 27 H 0.008 0.992 28 H 0.005 0.995 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.171 0.829 32 H 0.227 0.773 33 H 0.042 0.958 34 H 0.105 0.895 35 H 0.043 0.957 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.905 -17.057 11.749 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.219 1.219 6 H -0.224 1.224 7 C -0.366 4.366 8 H 0.104 0.896 9 N -0.350 5.350 10 C 0.073 3.927 11 C -0.131 4.131 12 H 0.139 0.861 13 C 0.000 4.000 14 N -0.325 5.325 15 C 0.376 3.624 16 O -0.452 6.452 17 C -0.144 4.144 18 C -0.187 4.187 19 C -0.409 4.409 20 S 0.682 5.318 21 N -0.383 5.383 22 C 0.010 3.990 23 C -0.117 4.117 24 H 0.152 0.848 25 C 0.016 3.984 26 H 0.054 0.946 27 H 0.026 0.974 28 H 0.023 0.977 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.189 0.811 32 H 0.243 0.757 33 H 0.060 0.940 34 H 0.122 0.878 35 H 0.062 0.938 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.272 -16.796 11.316 20.927 hybrid contribution -2.011 1.674 0.081 2.617 sum 3.261 -15.122 11.396 19.214 Atomic orbital electron populations 1.70213 1.06392 1.25015 1.58623 1.25647 0.96532 1.01084 1.02796 0.85032 0.78398 0.79553 0.76525 1.18598 1.21884 1.22433 1.19502 0.91093 0.83608 1.42434 0.89636 1.44520 1.02166 1.01361 1.86935 1.20757 0.84116 0.90224 0.97576 1.23032 0.95154 0.96576 0.98315 0.86127 1.21809 0.94075 0.99611 0.84465 1.48181 1.09513 1.64069 1.10712 1.17407 0.86621 0.77354 0.81050 1.90737 1.15560 1.56563 1.82339 1.20927 0.88794 1.08205 0.96485 1.21429 1.03729 1.02946 0.90579 1.27613 0.98861 1.06460 1.07931 1.80285 1.10830 1.48164 0.92474 1.72312 1.12681 1.23546 1.29765 1.22132 0.80057 1.02153 0.94700 1.23089 0.94567 1.00139 0.93954 0.84812 1.21366 0.94735 0.84000 0.98307 0.94626 0.97404 0.97669 0.89590 0.93577 0.81148 0.75669 0.93984 0.87760 0.93832 0.94791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.96 10.25 21.65 0.22 -58.74 16 2 C -0.07 -3.93 5.48 84.86 0.47 -3.47 16 3 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 7 C -0.24 -13.36 10.25 84.03 0.86 -12.50 16 8 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 9 N -0.62 -31.91 3.37 -697.82 -2.35 -34.26 16 10 C 0.20 9.95 4.75 86.58 0.41 10.36 16 11 C -0.11 -4.05 4.02 -9.49 -0.04 -4.09 16 12 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 13 C 0.12 4.50 6.23 86.59 0.54 5.04 16 14 N -0.59 -21.83 3.31 -820.58 -2.72 -24.55 16 15 C 0.59 21.88 7.83 86.74 0.68 22.56 16 16 O -0.57 -23.81 16.96 -3.93 -0.07 -23.88 16 17 C 0.03 0.83 6.60 42.13 0.28 1.11 16 18 C -0.15 -3.53 9.98 21.83 0.22 -3.31 16 19 C -0.26 -3.70 11.41 67.07 0.77 -2.94 16 20 S 0.53 8.49 23.20 -56.49 -1.31 7.18 16 21 N -0.55 -14.62 7.97 -75.30 -0.60 -15.22 16 22 C 0.13 4.54 5.06 86.72 0.44 4.98 16 23 C -0.10 -3.15 4.19 -9.25 -0.04 -3.19 16 24 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 25 C 0.14 5.50 6.37 86.66 0.55 6.05 16 26 H 0.24 14.78 8.31 -92.71 -0.77 14.01 16 27 H 0.01 0.44 7.46 -2.39 -0.02 0.42 16 28 H 0.01 0.30 6.50 -2.39 -0.02 0.29 16 29 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.05 1.95 7.44 -2.39 -0.02 1.93 16 31 H 0.17 3.76 7.99 -2.91 -0.02 3.73 16 32 H 0.23 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.04 1.75 7.72 -2.39 -0.02 1.73 16 34 H 0.10 3.13 6.30 -2.39 -0.02 3.12 16 35 H 0.04 1.65 7.95 -2.39 -0.02 1.63 16 36 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -75.87 306.22 1.43 -74.44 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 1.10 Total: 5.79 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 5.13 Total: 20.60 kcal Atomic # 7 Polarization: -127.33 SS G_CDS: -5.45 Total: -132.77 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.07 Total: -23.88 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Atomic # 16 Polarization: 8.49 SS G_CDS: -1.31 Total: 7.18 kcal Total: -75.87 1.43 -74.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048885818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.455 kcal (2) G-P(sol) polarization free energy of solvation -75.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds