Wall clock time and date at job start Tue Mar 31 2020 06:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00308 * 2 1 4 4 H 1.48500 * 109.47266 * 274.98864 * 3 2 1 5 5 H 1.48501 * 109.47079 * 34.98729 * 3 2 1 6 6 H 1.48496 * 109.47289 * 154.98559 * 3 2 1 7 7 C 1.38818 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00301 * 187.06183 * 7 2 1 9 9 N 1.36933 * 119.99672 * 7.06105 * 7 2 1 10 10 C 1.47149 * 125.58321 * 354.81770 * 9 7 2 11 11 C 1.54636 * 107.37697 * 179.06518 * 10 9 7 12 12 C 1.53513 * 102.70397 * 339.38838 * 11 10 9 13 13 C 1.51778 * 117.00184 * 164.16487 * 12 11 10 14 14 N 1.47391 * 87.51739 * 92.92591 * 13 12 11 15 15 C 1.34783 * 135.85503 * 205.66512 * 14 13 12 16 16 O 1.21635 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.47259 * 120.00000 * 179.97438 * 15 14 13 18 18 C 1.35207 * 123.13897 * 180.02562 * 17 15 14 19 19 S 1.70946 * 108.82779 * 180.28546 * 18 17 15 20 20 C 1.70765 * 91.12739 * 359.65923 * 19 18 17 21 21 N 1.28655 * 110.56042 * 0.34782 * 20 19 18 22 22 C 1.47383 * 88.29539 * 25.92177 * 14 13 12 23 23 C 1.47764 * 125.57813 * 174.79676 * 9 7 2 24 24 H 0.97001 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.86141 * 59.61896 * 10 9 7 26 26 H 1.08992 * 109.86414 * 298.51749 * 10 9 7 27 27 H 1.08996 * 110.76354 * 221.08105 * 11 10 9 28 28 H 1.09003 * 110.76181 * 97.68952 * 11 10 9 29 29 H 1.09002 * 113.53933 * 338.26979 * 13 12 11 30 30 H 1.08994 * 113.60967 * 207.59836 * 13 12 11 31 31 H 1.08005 * 125.59104 * 0.02562 * 18 17 15 32 32 H 1.08003 * 124.72347 * 180.02562 * 20 19 18 33 33 H 1.08999 * 113.54622 * 88.73983 * 22 14 13 34 34 H 1.09002 * 113.54443 * 219.42236 * 22 14 13 35 35 H 1.08997 * 110.40253 * 83.52423 * 23 9 7 36 36 H 1.09001 * 110.40316 * 321.09637 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4119 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0841 -1.2059 0.1144 9 7 1.3333 -2.3835 -0.1468 10 6 -0.1297 -2.5305 -0.2040 11 6 -0.4355 -4.0338 -0.3987 12 6 0.8852 -4.5767 -0.9624 13 6 1.0802 -6.0816 -0.9328 14 7 0.5274 -6.1157 -2.2987 15 6 -0.1144 -7.0241 -3.0600 16 8 -0.3540 -8.1303 -2.6146 17 6 -0.5266 -6.6769 -4.4304 18 6 -1.1735 -7.5377 -5.2482 19 16 -1.4658 -6.7635 -6.7440 20 6 -0.7170 -5.3329 -6.1883 21 7 -0.2960 -5.4826 -4.9818 22 6 0.9876 -4.7264 -2.4723 23 6 1.9525 -3.7191 -0.2736 24 1 -0.4850 0.8401 0.0004 25 1 -0.5267 -1.9601 -1.0437 26 1 -0.5738 -2.1798 0.7274 27 1 -1.2470 -4.1737 -1.1128 28 1 -0.6722 -4.5066 0.5545 29 1 0.4546 -6.5873 -0.1972 30 1 2.1255 -6.3854 -0.8785 31 1 -1.4554 -8.5500 -4.9989 32 1 -0.6071 -4.4299 -6.7705 33 1 2.0074 -4.6494 -2.8493 34 1 0.2848 -4.1003 -3.0221 35 1 2.1880 -4.1237 0.7107 36 1 2.8510 -3.6647 -0.8881 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072530573.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:03 Heat of formation + Delta-G solvation = 86.687922 kcal Electronic energy + Delta-G solvation = -21123.242795 eV Core-core repulsion = 17929.913859 eV Total energy + Delta-G solvation = -3193.328936 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.85172 -39.72592 -37.87206 -35.62763 -32.19425 -30.84979 -29.63433 -28.74712 -26.51952 -25.83386 -25.12405 -23.72871 -21.97804 -20.25371 -19.45604 -18.54553 -18.09358 -16.70366 -16.50266 -16.10861 -15.67880 -15.16360 -14.68596 -14.56578 -14.29613 -13.78419 -13.57793 -13.33348 -12.98088 -12.44373 -12.28876 -12.04435 -11.89161 -11.76705 -10.99810 -10.88482 -10.64319 -10.44989 -10.22267 -10.08255 -10.06564 -9.94161 -9.88217 -9.61167 -9.60109 -9.25588 -8.55901 -8.48308 -6.81519 -5.71043 -3.03207 0.33878 1.04245 1.38521 1.90248 2.97704 3.36241 3.41109 3.46466 3.48384 3.94514 4.47941 4.60549 4.78288 4.95316 5.04822 5.08489 5.30421 5.49186 5.52431 5.63815 5.69712 5.79159 5.85951 5.94340 6.20614 6.25410 6.28694 6.50346 6.57034 6.71164 6.74464 7.24774 7.57146 7.65479 7.81579 7.84518 8.19537 8.26471 9.22741 9.83188 10.49676 11.41005 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.003950 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.757055 B = 7087.697179 C = 7905.176461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.116 4.116 12 C -0.109 4.109 13 C 0.120 3.880 14 N -0.624 5.624 15 C 0.616 3.384 16 O -0.547 6.547 17 C 0.017 3.983 18 C -0.226 4.226 19 S 0.198 5.802 20 C 0.002 3.998 21 N -0.431 5.431 22 C 0.134 3.866 23 C 0.155 3.845 24 H 0.252 0.748 25 H 0.048 0.952 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.188 0.812 32 H 0.206 0.794 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.026 0.974 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 -13.131 -12.860 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.154 4.154 12 C -0.111 4.111 13 C -0.002 4.002 14 N -0.356 5.356 15 C 0.403 3.597 16 O -0.426 6.426 17 C -0.118 4.118 18 C -0.368 4.368 19 S 0.452 5.548 20 C -0.298 4.298 21 N -0.145 5.145 22 C 0.012 3.988 23 C 0.028 3.972 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.206 0.794 32 H 0.222 0.778 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.044 0.956 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.713 -13.438 -13.376 19.154 hybrid contribution 0.706 0.752 0.781 1.294 sum -2.007 -12.686 -12.595 17.989 Atomic orbital electron populations 1.69981 1.04924 1.24997 1.56789 1.24805 0.95654 0.97606 1.02190 0.86139 0.78701 0.83716 0.77469 1.21657 1.21837 1.20646 1.19055 0.91135 0.82511 1.42973 0.90380 1.44539 1.01607 1.00767 1.86177 1.21216 0.84344 0.88086 1.00830 1.22449 0.94098 0.99551 0.99346 1.22238 0.99878 0.93315 0.95658 1.22844 0.98869 0.95809 0.82704 1.49560 1.54450 1.15436 1.16192 1.16517 0.78070 0.82817 0.82280 1.90796 1.57974 1.21110 1.72720 1.20466 1.04244 0.89712 0.97398 1.26602 1.05238 1.06767 0.98207 1.82874 1.52654 1.06303 1.12964 1.28576 1.02083 1.03768 0.95383 1.67078 1.18510 1.19813 1.09127 1.22852 1.00170 0.79686 0.96085 1.21130 0.93365 0.86302 0.96424 0.93788 0.93381 0.94038 0.92189 0.91890 0.90318 0.89564 0.79436 0.77751 0.89829 0.89090 0.95639 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.75 10.35 55.49 0.57 -26.18 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 21.82 29.56 -169.99 -5.02 16.80 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.24 10.26 -15.06 -0.15 -6.40 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 9 N -0.60 -15.02 3.41 -170.53 -0.58 -15.60 16 10 C 0.18 4.31 5.40 -2.83 -0.02 4.30 16 11 C -0.12 -2.20 6.40 -25.61 -0.16 -2.36 16 12 C -0.11 -1.87 1.06 -155.22 -0.16 -2.04 16 13 C 0.12 1.81 8.03 -7.48 -0.06 1.75 16 14 N -0.62 -10.17 3.70 -187.09 -0.69 -10.86 16 15 C 0.62 10.43 8.05 -12.59 -0.10 10.33 16 16 O -0.55 -10.40 17.48 5.25 0.09 -10.31 16 17 C 0.02 0.24 6.69 -84.53 -0.57 -0.32 16 18 C -0.23 -2.52 10.62 29.65 0.31 -2.21 16 19 S 0.20 1.51 22.97 -107.50 -2.47 -0.95 16 20 C 0.00 0.02 12.17 51.43 0.63 0.64 16 21 N -0.43 -5.85 8.76 -12.37 -0.11 -5.96 16 22 C 0.13 2.19 6.96 -7.33 -0.05 2.14 16 23 C 0.15 3.04 6.70 -3.21 -0.02 3.01 16 24 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.05 1.28 7.30 -51.93 -0.38 0.90 16 26 H 0.04 1.10 7.60 -51.93 -0.39 0.71 16 27 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.17 8.13 -51.93 -0.42 0.74 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.19 1.89 8.03 -52.48 -0.42 1.47 16 32 H 0.21 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.08 1.29 8.06 -51.93 -0.42 0.87 16 34 H 0.09 1.60 7.35 -51.93 -0.38 1.22 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.04 0.81 8.00 -51.93 -0.42 0.39 16 LS Contribution 316.55 15.07 4.77 4.77 Total: -1.00 -32.94 316.55 -8.38 -41.32 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -4.49 Total: -1.61 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -0.45 Total: 8.58 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.81 Total: -58.60 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.47 Total: -0.95 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.94 -8.38 -41.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072530573.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.007 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds