Wall clock time and date at job start Tue Mar 31 2020 06:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00308 * 2 1 4 4 H 1.48500 * 109.47266 * 274.98864 * 3 2 1 5 5 H 1.48501 * 109.47079 * 34.98729 * 3 2 1 6 6 H 1.48496 * 109.47289 * 154.98559 * 3 2 1 7 7 C 1.38818 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00301 * 187.06183 * 7 2 1 9 9 N 1.36933 * 119.99672 * 7.06105 * 7 2 1 10 10 C 1.47149 * 125.58321 * 354.81770 * 9 7 2 11 11 C 1.54636 * 107.37697 * 179.06518 * 10 9 7 12 12 C 1.53513 * 102.70397 * 339.38838 * 11 10 9 13 13 C 1.51778 * 117.00184 * 164.16487 * 12 11 10 14 14 N 1.47391 * 87.51739 * 92.92591 * 13 12 11 15 15 C 1.34783 * 135.85503 * 205.66512 * 14 13 12 16 16 O 1.21635 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.47259 * 120.00000 * 179.97438 * 15 14 13 18 18 C 1.35207 * 123.13897 * 180.02562 * 17 15 14 19 19 S 1.70946 * 108.82779 * 180.28546 * 18 17 15 20 20 C 1.70765 * 91.12739 * 359.65923 * 19 18 17 21 21 N 1.28655 * 110.56042 * 0.34782 * 20 19 18 22 22 C 1.47383 * 88.29539 * 25.92177 * 14 13 12 23 23 C 1.47764 * 125.57813 * 174.79676 * 9 7 2 24 24 H 0.97001 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.86141 * 59.61896 * 10 9 7 26 26 H 1.08992 * 109.86414 * 298.51749 * 10 9 7 27 27 H 1.08996 * 110.76354 * 221.08105 * 11 10 9 28 28 H 1.09003 * 110.76181 * 97.68952 * 11 10 9 29 29 H 1.09002 * 113.53933 * 338.26979 * 13 12 11 30 30 H 1.08994 * 113.60967 * 207.59836 * 13 12 11 31 31 H 1.08005 * 125.59104 * 0.02562 * 18 17 15 32 32 H 1.08003 * 124.72347 * 180.02562 * 20 19 18 33 33 H 1.08999 * 113.54622 * 88.73983 * 22 14 13 34 34 H 1.09002 * 113.54443 * 219.42236 * 22 14 13 35 35 H 1.08997 * 110.40253 * 83.52423 * 23 9 7 36 36 H 1.09001 * 110.40316 * 321.09637 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4119 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0841 -1.2059 0.1144 9 7 1.3333 -2.3835 -0.1468 10 6 -0.1297 -2.5305 -0.2040 11 6 -0.4355 -4.0338 -0.3987 12 6 0.8852 -4.5767 -0.9624 13 6 1.0802 -6.0816 -0.9328 14 7 0.5274 -6.1157 -2.2987 15 6 -0.1144 -7.0241 -3.0600 16 8 -0.3540 -8.1303 -2.6146 17 6 -0.5266 -6.6769 -4.4304 18 6 -1.1735 -7.5377 -5.2482 19 16 -1.4658 -6.7635 -6.7440 20 6 -0.7170 -5.3329 -6.1883 21 7 -0.2960 -5.4826 -4.9818 22 6 0.9876 -4.7264 -2.4723 23 6 1.9525 -3.7191 -0.2736 24 1 -0.4850 0.8401 0.0004 25 1 -0.5267 -1.9601 -1.0437 26 1 -0.5738 -2.1798 0.7274 27 1 -1.2470 -4.1737 -1.1128 28 1 -0.6722 -4.5066 0.5545 29 1 0.4546 -6.5873 -0.1972 30 1 2.1255 -6.3854 -0.8785 31 1 -1.4554 -8.5500 -4.9989 32 1 -0.6071 -4.4299 -6.7705 33 1 2.0074 -4.6494 -2.8493 34 1 0.2848 -4.1003 -3.0221 35 1 2.1880 -4.1237 0.7107 36 1 2.8510 -3.6647 -0.8881 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072530573.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:03 Heat of formation + Delta-G solvation = 64.320845 kcal Electronic energy + Delta-G solvation = -21124.212704 eV Core-core repulsion = 17929.913859 eV Total energy + Delta-G solvation = -3194.298845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.08483 -40.79571 -39.14123 -37.32086 -34.09426 -31.82478 -31.23328 -30.35056 -27.90067 -27.19301 -26.39478 -25.32841 -23.06601 -22.12637 -20.41361 -19.89127 -19.28648 -18.57004 -17.60391 -17.20967 -16.91329 -16.73067 -16.24888 -15.70772 -15.61700 -15.58822 -14.61490 -14.34815 -14.23037 -14.14753 -13.76113 -13.65767 -13.29996 -12.97010 -12.85272 -12.75475 -12.25113 -11.99574 -11.96589 -11.83389 -11.74103 -11.25798 -11.15770 -10.74580 -10.70709 -10.63983 -10.08488 -9.70128 -8.84326 -7.81364 -5.15128 -0.48309 0.33114 0.62014 0.92774 1.49846 1.51267 1.60051 1.79978 2.25592 2.53493 3.03940 3.25896 3.42170 3.57673 3.77468 3.82197 4.03841 4.11853 4.20667 4.29071 4.43866 4.57040 4.57507 4.68763 4.75653 4.84947 4.89538 5.00370 5.04627 5.16797 5.20253 5.51594 5.67684 5.79325 6.22984 6.42531 6.55881 6.99329 7.14062 7.81607 8.47000 9.29924 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.003950 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.757055 B = 7087.697179 C = 7905.176461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.065 4.065 3 Si 0.975 3.025 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.238 4.238 8 H 0.087 0.913 9 N -0.625 5.625 10 C 0.192 3.808 11 C -0.101 4.101 12 C -0.103 4.103 13 C 0.127 3.873 14 N -0.627 5.627 15 C 0.610 3.390 16 O -0.578 6.578 17 C -0.019 4.019 18 C -0.237 4.237 19 S 0.304 5.696 20 C -0.011 4.011 21 N -0.471 5.471 22 C 0.144 3.856 23 C 0.154 3.846 24 H 0.245 0.755 25 H 0.012 0.988 26 H 0.004 0.996 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.194 0.806 32 H 0.234 0.766 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.449 -14.183 -14.626 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.258 4.258 3 Si 0.804 3.196 4 H -0.215 1.215 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.367 4.367 8 H 0.105 0.895 9 N -0.352 5.352 10 C 0.067 3.933 11 C -0.139 4.139 12 C -0.104 4.104 13 C 0.005 3.995 14 N -0.359 5.359 15 C 0.399 3.601 16 O -0.460 6.460 17 C -0.154 4.154 18 C -0.380 4.380 19 S 0.559 5.441 20 C -0.310 4.310 21 N -0.186 5.186 22 C 0.022 3.978 23 C 0.028 3.972 24 H 0.054 0.946 25 H 0.030 0.970 26 H 0.022 0.978 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.130 0.870 31 H 0.211 0.789 32 H 0.250 0.750 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.888 -14.512 -15.161 21.072 hybrid contribution 0.407 1.030 1.216 1.645 sum -1.480 -13.482 -13.945 19.453 Atomic orbital electron populations 1.70204 1.06414 1.25127 1.58357 1.25625 0.96462 1.00934 1.02762 0.85105 0.77921 0.79418 0.77189 1.21496 1.22548 1.19074 1.19483 0.91760 0.83680 1.41765 0.89540 1.44823 1.02132 1.02183 1.86015 1.20887 0.84139 0.90907 0.97401 1.22237 0.95338 0.96020 1.00332 1.22060 0.97597 0.94653 0.96120 1.22877 1.00504 0.93574 0.82516 1.49572 1.54514 1.15254 1.16577 1.16971 0.77423 0.82382 0.83346 1.90758 1.59245 1.22199 1.73768 1.20244 1.07054 0.91190 0.96919 1.26924 1.04006 1.07053 1.00026 1.82515 1.49476 1.03063 1.09024 1.29111 1.01272 1.05897 0.94693 1.67046 1.20478 1.20010 1.11031 1.22742 1.00426 0.79661 0.95021 1.21292 0.94206 0.84212 0.97459 0.94560 0.97016 0.97754 0.91944 0.90538 0.89835 0.86978 0.78900 0.75011 0.88573 0.90663 0.94422 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.37 10.35 21.65 0.22 -57.15 16 2 C -0.06 -3.67 5.48 84.86 0.46 -3.20 16 3 Si 0.97 45.33 29.56 68.60 2.03 47.36 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.24 -13.06 10.26 84.04 0.86 -12.20 16 8 H 0.09 4.48 7.84 -2.91 -0.02 4.46 16 9 N -0.63 -31.36 3.41 -693.43 -2.36 -33.72 16 10 C 0.19 9.54 5.40 86.81 0.47 10.00 16 11 C -0.10 -3.84 6.40 31.32 0.20 -3.64 16 12 C -0.10 -3.42 1.06 -52.62 -0.06 -3.47 16 13 C 0.13 3.60 8.03 83.67 0.67 4.27 16 14 N -0.63 -19.90 3.70 -864.06 -3.19 -23.09 16 15 C 0.61 20.46 8.05 86.61 0.70 21.15 16 16 O -0.58 -21.91 17.48 -4.14 -0.07 -21.98 16 17 C -0.02 -0.53 6.69 40.56 0.27 -0.26 16 18 C -0.24 -4.92 10.62 67.12 0.71 -4.20 16 19 S 0.30 3.67 22.97 -56.49 -1.30 2.38 16 20 C -0.01 -0.19 12.17 130.71 1.59 1.41 16 21 N -0.47 -12.32 8.76 -193.03 -1.69 -14.01 16 22 C 0.14 4.59 6.96 83.76 0.58 5.17 16 23 C 0.15 5.85 6.70 86.22 0.58 6.42 16 24 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 25 H 0.01 0.65 7.30 -2.39 -0.02 0.64 16 26 H 0.00 0.24 7.60 -2.39 -0.02 0.22 16 27 H 0.06 2.34 8.07 -2.39 -0.02 2.32 16 28 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.08 2.31 8.13 -2.39 -0.02 2.30 16 30 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.19 3.63 8.03 -2.91 -0.02 3.61 16 32 H 0.23 2.25 8.06 -2.91 -0.02 2.22 16 33 H 0.10 2.83 8.06 -2.39 -0.02 2.81 16 34 H 0.07 2.67 7.35 -2.39 -0.02 2.65 16 35 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 2.00 8.00 -2.39 -0.02 1.98 16 Total: -1.00 -73.82 316.55 1.77 -72.05 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 1.09 Total: 6.71 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 7.05 Total: 21.46 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -7.02 Total: -127.98 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.07 Total: -21.98 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -1.30 Total: 2.38 kcal Total: -73.82 1.77 -72.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072530573.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.367 kcal (2) G-P(sol) polarization free energy of solvation -73.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds