Wall clock time and date at job start Tue Mar 31 2020 06:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86809 * 119.99740 * 2 1 4 4 H 1.48496 * 109.47002 * 264.98885 * 3 2 1 5 5 H 1.48495 * 109.47051 * 24.99159 * 3 2 1 6 6 H 1.48504 * 109.46699 * 144.98934 * 3 2 1 7 7 C 1.38808 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00502 * 189.00525 * 7 2 1 9 9 N 1.36938 * 119.99494 * 9.00873 * 7 2 1 10 10 C 1.50246 * 130.83357 * 190.16166 * 9 7 2 11 11 H 1.09000 * 115.86105 * 0.35746 * 10 9 7 12 12 C 1.55838 * 101.04776 * 233.96440 * 10 9 7 13 13 C 1.54850 * 103.45263 * 327.06239 * 12 10 9 14 14 C 1.50238 * 130.84466 * 10.15737 * 9 7 2 15 15 H 1.08997 * 115.85475 * 359.64987 * 14 9 7 16 16 C 1.55839 * 101.05638 * 233.97227 * 14 9 7 17 17 H 1.09004 * 110.76053 * 85.60998 * 16 14 9 18 18 N 1.46496 * 110.63029 * 208.57266 * 16 14 9 19 19 C 1.34775 * 119.99835 * 269.65598 * 18 16 14 20 20 O 1.21684 * 119.99949 * 0.27745 * 19 18 16 21 21 C 1.46686 * 119.99953 * 180.27089 * 19 18 16 22 22 C 1.35660 * 126.12833 * 179.97438 * 21 19 18 23 23 N 1.30947 * 114.18885 * 180.02562 * 22 21 19 24 24 C 1.29426 * 117.36252 * 359.97438 * 23 22 21 25 25 S 1.70954 * 110.39289 * 359.72387 * 24 23 22 26 26 C 1.54859 * 103.44255 * 327.06425 * 16 14 9 27 27 H 0.96997 * 119.99914 * 359.97438 * 1 2 3 28 28 H 1.09001 * 110.62945 * 85.55938 * 12 10 9 29 29 H 1.09010 * 110.62745 * 208.57497 * 12 10 9 30 30 H 1.08991 * 110.63326 * 241.51422 * 13 12 10 31 31 H 1.09005 * 110.76484 * 118.55095 * 13 12 10 32 32 H 0.96999 * 119.99977 * 89.93006 * 18 16 14 33 33 H 1.07992 * 122.90899 * 0.02562 * 22 21 19 34 34 H 1.07998 * 124.80247 * 180.02562 * 24 23 22 35 35 H 1.08998 * 110.62924 * 118.49232 * 26 16 14 36 36 H 1.09003 * 110.62195 * 241.35131 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.6036 1.9854 -1.3947 5 1 1.3987 2.6809 0.5915 6 1 3.4908 1.4731 0.8033 7 6 2.0104 -1.2021 -0.0005 8 1 3.0804 -1.2079 0.1458 9 7 1.3383 -2.3806 -0.1868 10 6 1.7921 -3.8048 -0.0350 11 1 2.8261 -3.9433 0.2809 12 6 1.4167 -4.3882 -1.4304 13 6 0.1418 -3.6000 -1.8193 14 6 -0.0795 -2.6476 -0.6057 15 1 -0.6938 -1.7668 -0.7926 16 6 -0.5640 -3.5720 0.5516 17 1 -0.9218 -2.9807 1.3945 18 7 -1.6105 -4.4828 0.0810 19 6 -2.9057 -4.1184 0.1583 20 8 -3.2056 -3.0309 0.6144 21 6 -3.9539 -5.0328 -0.3074 22 6 -5.2894 -4.7952 -0.2874 23 7 -6.0161 -5.7760 -0.7614 24 6 -5.3922 -6.8288 -1.1827 25 16 -3.7036 -6.6334 -1.0004 26 6 0.7109 -4.3603 0.9404 27 1 -0.4850 0.8400 0.0004 28 1 2.2150 -4.2064 -2.1500 29 1 1.2012 -5.4541 -1.3557 30 1 -0.7059 -4.2748 -1.9373 31 1 0.3050 -3.0271 -2.7322 32 1 -1.3714 -5.3497 -0.2826 33 1 -5.7164 -3.8766 0.0870 34 1 -5.8703 -7.7046 -1.5957 35 1 0.9869 -4.1578 1.9753 36 1 0.5636 -5.4292 0.7857 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095216538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:24 Heat of formation + Delta-G solvation = 65.864419 kcal Electronic energy + Delta-G solvation = -21521.944054 eV Core-core repulsion = 18327.712143 eV Total energy + Delta-G solvation = -3194.231911 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.21767 -39.54813 -38.06672 -33.87682 -32.43821 -30.82537 -29.42213 -28.67838 -27.85492 -26.00698 -24.19165 -22.27839 -21.13420 -20.02877 -19.65179 -18.87684 -18.52486 -16.94884 -16.58280 -15.84899 -15.19728 -14.86861 -14.63930 -14.48080 -14.12157 -14.03639 -13.65060 -13.56792 -12.44082 -12.14886 -11.85549 -11.75857 -11.59328 -11.08619 -10.94698 -10.84881 -10.82047 -10.36742 -10.11491 -10.07657 -9.91718 -9.69496 -9.66785 -9.41195 -9.35447 -9.21341 -8.94556 -8.35321 -6.89597 -5.72455 -3.10722 0.16181 1.04661 1.42804 2.44561 3.37268 3.41010 3.43234 3.46094 3.48197 4.12190 4.45684 4.93091 5.00720 5.16125 5.24753 5.35301 5.52727 5.73253 5.79332 5.93343 5.96025 6.00623 6.04587 6.21203 6.25197 6.46956 6.54002 6.67623 6.73619 6.90360 6.95775 7.20909 7.41030 7.52690 7.70151 7.87896 8.13470 8.48707 9.07720 9.72900 10.54044 11.38446 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025264 B = 0.004559 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.017941 B = 6140.527257 C = 6829.394757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.079 0.921 9 N -0.588 5.588 10 C 0.130 3.870 11 H 0.088 0.912 12 C -0.130 4.130 13 C -0.141 4.141 14 C 0.159 3.841 15 H 0.143 0.857 16 C 0.126 3.874 17 H 0.093 0.907 18 N -0.705 5.705 19 C 0.584 3.416 20 O -0.511 6.511 21 C -0.269 4.269 22 C 0.104 3.896 23 N -0.475 5.475 24 C 0.023 3.977 25 S 0.157 5.843 26 C -0.139 4.139 27 H 0.256 0.744 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.389 0.611 33 H 0.189 0.811 34 H 0.203 0.797 35 H 0.065 0.935 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.830 -16.692 -2.734 17.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.308 5.308 10 C 0.022 3.978 11 H 0.106 0.894 12 C -0.169 4.169 13 C -0.181 4.181 14 C 0.050 3.950 15 H 0.160 0.840 16 C 0.021 3.979 17 H 0.111 0.889 18 N -0.356 5.356 19 C 0.367 3.633 20 O -0.387 6.387 21 C -0.394 4.394 22 C -0.052 4.052 23 N -0.188 5.188 24 C -0.272 4.272 25 S 0.410 5.590 26 C -0.179 4.179 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.223 0.777 33 H 0.206 0.794 34 H 0.220 0.780 35 H 0.084 0.916 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.726 -16.198 -2.628 17.380 hybrid contribution 0.095 0.993 0.083 1.001 sum -5.631 -15.205 -2.545 16.413 Atomic orbital electron populations 1.69687 1.04895 1.25461 1.55443 1.24812 0.95574 0.97689 1.02269 0.86136 0.78555 0.83407 0.77619 1.21597 1.21661 1.20747 1.18959 0.90820 0.82127 1.43311 0.90357 1.46459 1.08181 0.99069 1.77130 1.22994 0.95620 0.86479 0.92698 0.89399 1.22961 0.98130 0.97108 0.98735 1.23029 0.95930 0.98630 1.00485 1.23636 0.87484 0.95095 0.88746 0.84014 1.22848 0.84797 0.90165 1.00131 0.88915 1.46137 1.05565 1.20279 1.63619 1.16719 0.81762 0.85510 0.79342 1.90916 1.81875 1.21036 1.44915 1.26101 0.99522 0.99952 1.13795 1.22268 0.87970 0.98520 0.96477 1.66250 1.38813 1.00647 1.13058 1.28743 0.94337 1.01320 1.02811 1.83926 1.09560 1.11193 1.54336 1.23204 0.96826 0.97346 1.00497 0.93358 0.92705 0.93310 0.93362 0.92796 0.77706 0.79375 0.78022 0.91640 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.79 10.75 55.49 0.60 -26.19 16 2 C -0.01 -0.17 5.47 -17.43 -0.10 -0.27 16 3 Si 0.91 22.06 29.56 -169.99 -5.03 17.03 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.22 -6.11 10.55 -15.06 -0.16 -6.27 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 9 N -0.59 -14.39 2.98 -145.82 -0.43 -14.83 16 10 C 0.13 2.49 5.48 -62.80 -0.34 2.15 16 11 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 12 C -0.13 -2.21 6.44 -24.24 -0.16 -2.37 16 13 C -0.14 -2.70 6.32 -24.23 -0.15 -2.86 16 14 C 0.16 3.67 4.51 -62.80 -0.28 3.39 16 15 H 0.14 3.94 5.89 -51.93 -0.31 3.64 16 16 C 0.13 2.52 3.15 -65.44 -0.21 2.31 16 17 H 0.09 2.21 7.57 -51.93 -0.39 1.81 16 18 N -0.71 -11.50 3.70 -52.70 -0.20 -11.69 16 19 C 0.58 10.22 7.79 -12.85 -0.10 10.12 16 20 O -0.51 -11.26 16.52 5.20 0.09 -11.18 16 21 C -0.27 -3.72 6.48 -37.09 -0.24 -3.96 16 22 C 0.10 1.40 11.09 -18.85 -0.21 1.19 16 23 N -0.47 -5.79 10.51 -15.38 -0.16 -5.95 16 24 C 0.02 0.21 12.22 51.75 0.63 0.84 16 25 S 0.16 1.47 22.35 -107.50 -2.40 -0.93 16 26 C -0.14 -2.41 6.20 -24.23 -0.15 -2.56 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.68 7.82 -51.92 -0.41 0.27 16 30 H 0.05 0.81 6.39 -51.93 -0.33 0.48 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.39 5.15 7.10 -40.82 -0.29 4.87 16 33 H 0.19 2.48 8.06 -52.49 -0.42 2.06 16 34 H 0.20 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 0.79 7.39 -51.93 -0.38 0.41 16 LS Contribution 310.39 15.07 4.68 4.68 Total: -1.00 -32.43 310.39 -8.52 -40.95 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.19 Total: 6.39 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.46 Total: 1.73 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.19 Total: -58.67 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.40 Total: -0.93 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.43 -8.52 -40.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095216538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.812 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds