Wall clock time and date at job start Tue Mar 31 2020 06:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86809 * 119.99740 * 2 1 4 4 H 1.48496 * 109.47002 * 264.98885 * 3 2 1 5 5 H 1.48495 * 109.47051 * 24.99159 * 3 2 1 6 6 H 1.48504 * 109.46699 * 144.98934 * 3 2 1 7 7 C 1.38808 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00502 * 189.00525 * 7 2 1 9 9 N 1.36938 * 119.99494 * 9.00873 * 7 2 1 10 10 C 1.50246 * 130.83357 * 190.16166 * 9 7 2 11 11 H 1.09000 * 115.86105 * 0.35746 * 10 9 7 12 12 C 1.55838 * 101.04776 * 233.96440 * 10 9 7 13 13 C 1.54850 * 103.45263 * 327.06239 * 12 10 9 14 14 C 1.50238 * 130.84466 * 10.15737 * 9 7 2 15 15 H 1.08997 * 115.85475 * 359.64987 * 14 9 7 16 16 C 1.55839 * 101.05638 * 233.97227 * 14 9 7 17 17 H 1.09004 * 110.76053 * 85.60998 * 16 14 9 18 18 N 1.46496 * 110.63029 * 208.57266 * 16 14 9 19 19 C 1.34775 * 119.99835 * 269.65598 * 18 16 14 20 20 O 1.21684 * 119.99949 * 0.27745 * 19 18 16 21 21 C 1.46686 * 119.99953 * 180.27089 * 19 18 16 22 22 C 1.35660 * 126.12833 * 179.97438 * 21 19 18 23 23 N 1.30947 * 114.18885 * 180.02562 * 22 21 19 24 24 C 1.29426 * 117.36252 * 359.97438 * 23 22 21 25 25 S 1.70954 * 110.39289 * 359.72387 * 24 23 22 26 26 C 1.54859 * 103.44255 * 327.06425 * 16 14 9 27 27 H 0.96997 * 119.99914 * 359.97438 * 1 2 3 28 28 H 1.09001 * 110.62945 * 85.55938 * 12 10 9 29 29 H 1.09010 * 110.62745 * 208.57497 * 12 10 9 30 30 H 1.08991 * 110.63326 * 241.51422 * 13 12 10 31 31 H 1.09005 * 110.76484 * 118.55095 * 13 12 10 32 32 H 0.96999 * 119.99977 * 89.93006 * 18 16 14 33 33 H 1.07992 * 122.90899 * 0.02562 * 22 21 19 34 34 H 1.07998 * 124.80247 * 180.02562 * 24 23 22 35 35 H 1.08998 * 110.62924 * 118.49232 * 26 16 14 36 36 H 1.09003 * 110.62195 * 241.35131 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.6036 1.9854 -1.3947 5 1 1.3987 2.6809 0.5915 6 1 3.4908 1.4731 0.8033 7 6 2.0104 -1.2021 -0.0005 8 1 3.0804 -1.2079 0.1458 9 7 1.3383 -2.3806 -0.1868 10 6 1.7921 -3.8048 -0.0350 11 1 2.8261 -3.9433 0.2809 12 6 1.4167 -4.3882 -1.4304 13 6 0.1418 -3.6000 -1.8193 14 6 -0.0795 -2.6476 -0.6057 15 1 -0.6938 -1.7668 -0.7926 16 6 -0.5640 -3.5720 0.5516 17 1 -0.9218 -2.9807 1.3945 18 7 -1.6105 -4.4828 0.0810 19 6 -2.9057 -4.1184 0.1583 20 8 -3.2056 -3.0309 0.6144 21 6 -3.9539 -5.0328 -0.3074 22 6 -5.2894 -4.7952 -0.2874 23 7 -6.0161 -5.7760 -0.7614 24 6 -5.3922 -6.8288 -1.1827 25 16 -3.7036 -6.6334 -1.0004 26 6 0.7109 -4.3603 0.9404 27 1 -0.4850 0.8400 0.0004 28 1 2.2150 -4.2064 -2.1500 29 1 1.2012 -5.4541 -1.3557 30 1 -0.7059 -4.2748 -1.9373 31 1 0.3050 -3.0271 -2.7322 32 1 -1.3714 -5.3497 -0.2826 33 1 -5.7164 -3.8766 0.0870 34 1 -5.8703 -7.7046 -1.5957 35 1 0.9869 -4.1578 1.9753 36 1 0.5636 -5.4292 0.7857 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095216538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:24 Heat of formation + Delta-G solvation = 42.824569 kcal Electronic energy + Delta-G solvation = -21522.943137 eV Core-core repulsion = 18327.712143 eV Total energy + Delta-G solvation = -3195.230993 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58098 -40.71987 -39.50228 -35.48727 -34.36021 -31.92655 -31.03135 -30.39471 -29.36254 -27.04084 -26.03673 -23.55218 -22.63070 -21.41107 -21.04566 -20.19261 -19.84313 -18.80521 -17.73279 -17.21122 -16.79320 -16.48300 -16.04266 -15.84365 -15.63433 -14.97280 -14.94896 -14.81936 -14.07657 -13.91066 -13.55215 -13.21766 -12.89053 -12.79643 -12.67273 -12.56078 -12.33409 -11.99250 -11.88807 -11.70056 -11.33772 -11.19678 -10.99585 -10.80848 -10.72689 -10.61467 -10.07603 -9.93403 -8.84731 -7.81429 -5.19960 -0.75715 0.19111 0.57758 1.44180 1.44554 1.46872 1.54860 2.05502 2.15368 2.49976 3.32969 3.33893 3.51523 3.79186 3.98054 4.11249 4.15848 4.18881 4.36849 4.42758 4.46811 4.64360 4.71907 4.75658 5.00524 5.02952 5.07932 5.11947 5.22610 5.38328 5.46351 5.54456 5.70776 5.85434 6.18432 6.45014 6.58807 6.98642 7.17506 7.69939 8.56889 9.27770 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025264 B = 0.004559 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.017941 B = 6140.527257 C = 6829.394757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.070 4.070 3 Si 0.974 3.026 4 H -0.288 1.288 5 H -0.302 1.302 6 H -0.266 1.266 7 C -0.224 4.224 8 H 0.086 0.914 9 N -0.619 5.619 10 C 0.124 3.876 11 H 0.104 0.896 12 C -0.115 4.115 13 C -0.131 4.131 14 C 0.141 3.859 15 H 0.085 0.915 16 C 0.139 3.861 17 H 0.040 0.960 18 N -0.690 5.690 19 C 0.583 3.417 20 O -0.573 6.573 21 C -0.314 4.314 22 C 0.106 3.894 23 N -0.504 5.504 24 C 0.042 3.958 25 S 0.239 5.761 26 C -0.124 4.124 27 H 0.243 0.757 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.409 0.591 33 H 0.174 0.826 34 H 0.250 0.750 35 H 0.058 0.942 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 -21.274 -3.928 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.263 4.263 3 Si 0.803 3.197 4 H -0.215 1.215 5 H -0.229 1.229 6 H -0.191 1.191 7 C -0.353 4.353 8 H 0.103 0.897 9 N -0.340 5.340 10 C 0.018 3.982 11 H 0.121 0.879 12 C -0.154 4.154 13 C -0.171 4.171 14 C 0.032 3.968 15 H 0.103 0.897 16 C 0.033 3.967 17 H 0.058 0.942 18 N -0.341 5.341 19 C 0.369 3.631 20 O -0.454 6.454 21 C -0.439 4.439 22 C -0.052 4.052 23 N -0.218 5.218 24 C -0.252 4.252 25 S 0.493 5.507 26 C -0.164 4.164 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.247 0.753 33 H 0.191 0.809 34 H 0.266 0.734 35 H 0.077 0.923 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.763 -20.888 -3.847 21.767 hybrid contribution -0.250 2.257 0.408 2.307 sum -5.013 -18.631 -3.440 19.598 Atomic orbital electron populations 1.69986 1.06442 1.24961 1.57948 1.25607 0.96231 1.00940 1.03554 0.85155 0.77610 0.79453 0.77511 1.21470 1.22880 1.19079 1.19361 0.91375 0.83587 1.40959 0.89679 1.46757 1.08961 1.00642 1.77688 1.23345 0.96862 0.83443 0.94559 0.87857 1.22901 0.96472 0.99253 0.96761 1.22910 0.98460 0.98179 0.97504 1.23398 0.86728 0.94770 0.91862 0.89727 1.22281 0.86654 0.90582 0.97208 0.94194 1.45813 1.04592 1.20381 1.63349 1.17220 0.82593 0.85227 0.78057 1.90884 1.82855 1.24039 1.47581 1.25686 0.98334 1.02847 1.17003 1.22225 0.88247 0.98727 0.95996 1.66322 1.39145 1.01412 1.14881 1.29618 0.94740 1.01212 0.99607 1.83532 1.08795 1.06348 1.51995 1.23130 0.94018 0.99554 0.99651 0.94783 0.92547 0.88314 0.90675 0.94833 0.75295 0.80906 0.73423 0.92283 0.87578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.76 10.75 21.65 0.23 -59.52 16 2 C -0.07 -4.09 5.47 84.86 0.46 -3.63 16 3 Si 0.97 47.18 29.56 68.60 2.03 49.21 16 4 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.22 -12.48 10.55 84.03 0.89 -11.59 16 8 H 0.09 4.48 7.84 -2.91 -0.02 4.46 16 9 N -0.62 -30.71 2.98 -615.24 -1.83 -32.54 16 10 C 0.12 4.44 5.48 46.23 0.25 4.69 16 11 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 12 C -0.11 -3.44 6.44 32.21 0.21 -3.24 16 13 C -0.13 -4.85 6.32 32.21 0.20 -4.64 16 14 C 0.14 6.74 4.51 46.23 0.21 6.95 16 15 H 0.08 5.11 5.89 -2.39 -0.01 5.09 16 16 C 0.14 5.68 3.15 46.61 0.15 5.83 16 17 H 0.04 2.05 7.57 -2.39 -0.02 2.03 16 18 N -0.69 -21.89 3.70 -438.87 -1.63 -23.51 16 19 C 0.58 21.03 7.79 86.45 0.67 21.70 16 20 O -0.57 -27.45 16.52 -4.30 -0.07 -27.53 16 21 C -0.31 -8.43 6.48 23.88 0.15 -8.27 16 22 C 0.11 2.87 11.09 84.23 0.93 3.81 16 23 N -0.50 -11.28 10.51 -202.57 -2.13 -13.41 16 24 C 0.04 0.57 12.22 130.60 1.60 2.17 16 25 S 0.24 3.46 22.35 -56.49 -1.26 2.19 16 26 C -0.12 -4.00 6.20 32.21 0.20 -3.80 16 27 H 0.24 15.26 8.31 -92.71 -0.77 14.49 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.10 2.05 7.82 -2.38 -0.02 2.03 16 30 H 0.07 2.31 6.39 -2.39 -0.02 2.30 16 31 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.41 9.34 7.10 -92.71 -0.66 8.68 16 33 H 0.17 4.97 8.06 -2.91 -0.02 4.95 16 34 H 0.25 0.87 8.06 -2.91 -0.02 0.85 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.11 2.39 7.39 -2.39 -0.02 2.37 16 Total: -1.00 -79.90 310.39 1.73 -78.17 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.46 Total: 16.98 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 5.93 Total: 9.96 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -5.35 Total: -128.99 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.07 Total: -27.53 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.26 Total: 2.19 kcal Total: -79.90 1.73 -78.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095216538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.990 kcal (2) G-P(sol) polarization free energy of solvation -79.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds