Wall clock time and date at job start Tue Mar 31 2020 06:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00160 * 2 1 4 4 H 1.48507 * 109.46988 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47318 * 299.99793 * 3 2 1 6 6 H 1.48500 * 109.47136 * 60.00110 * 3 2 1 7 7 C 1.38815 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99500 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00205 * 359.97438 * 7 2 1 10 10 C 1.50233 * 130.83989 * 0.05048 * 9 7 2 11 11 H 1.09000 * 115.85668 * 0.31727 * 10 9 7 12 12 C 1.55850 * 101.04997 * 233.93047 * 10 9 7 13 13 C 1.56688 * 103.59714 * 326.82905 * 12 10 9 14 14 C 1.50236 * 130.83608 * 179.97438 * 9 7 2 15 15 H 1.09001 * 115.86392 * 359.67966 * 14 9 7 16 16 C 1.55844 * 101.05043 * 234.00568 * 14 9 7 17 17 H 1.08998 * 110.76683 * 85.61944 * 16 14 9 18 18 N 1.46504 * 110.62603 * 208.57628 * 16 14 9 19 19 C 1.34775 * 119.99700 * 269.99642 * 18 16 14 20 20 O 1.21577 * 120.00495 * 0.02562 * 19 18 16 21 21 C 1.47690 * 119.99611 * 179.97438 * 19 18 16 22 22 C 1.39495 * 122.09936 * 179.74552 * 21 19 18 23 23 C 1.35006 * 111.68125 * 179.78891 * 22 21 19 24 24 S 1.71757 * 105.45079 * 0.42914 * 23 22 21 25 25 N 1.30601 * 122.10951 * 0.03472 * 21 19 18 26 26 C 1.54859 * 103.44583 * 327.06267 * 16 14 9 27 27 H 0.96995 * 119.99413 * 0.02562 * 1 2 3 28 28 H 1.09003 * 110.62493 * 85.55039 * 12 10 9 29 29 H 1.08998 * 110.62738 * 208.41179 * 12 10 9 30 30 H 1.09000 * 111.43386 * 241.93952 * 13 12 10 31 31 H 1.09005 * 110.61599 * 118.35801 * 13 12 10 32 32 H 0.97002 * 120.00037 * 90.00760 * 18 16 14 33 33 H 1.07998 * 124.15751 * 359.97438 * 22 21 19 34 34 H 1.07997 * 127.27546 * 180.16917 * 23 22 21 35 35 H 1.09001 * 110.62475 * 118.48681 * 26 16 14 36 36 H 1.08995 * 110.62614 * 241.51426 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1500 -2.6706 0.0014 11 1 -0.8014 -1.7966 -0.0053 12 6 -0.2745 -3.6099 1.2387 13 6 1.0787 -4.3998 1.2392 14 6 1.8186 -3.8072 0.0019 15 1 2.9012 -3.9344 -0.0044 16 6 1.0666 -4.3850 -1.2348 17 1 1.6229 -4.1894 -2.1515 18 7 0.8328 -5.8220 -1.0716 19 6 1.7475 -6.7079 -1.5132 20 8 2.7668 -6.3146 -2.0465 21 6 1.5120 -8.1566 -1.3481 22 6 2.4262 -9.1116 -1.7932 23 6 2.0034 -10.3668 -1.5317 24 16 0.4807 -10.1848 -0.7581 25 7 0.4324 -8.6243 -0.7814 26 6 -0.2745 -3.6107 -1.2348 27 1 -0.4849 0.8401 -0.0004 28 1 -0.3821 -3.0273 2.1537 29 1 -1.1152 -4.2933 1.1190 30 1 0.9152 -5.4700 1.1126 31 1 1.6386 -4.2013 2.1532 32 1 0.0196 -6.1359 -0.6460 33 1 3.3590 -8.8758 -2.2838 34 1 2.5128 -11.2903 -1.7640 35 1 -0.3819 -3.0288 -2.1502 36 1 -1.1134 -4.2959 -1.1134 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095598402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:02 Heat of formation + Delta-G solvation = 60.999417 kcal Electronic energy + Delta-G solvation = -21395.032321 eV Core-core repulsion = 18200.589448 eV Total energy + Delta-G solvation = -3194.442873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.51145 -39.23915 -37.69508 -34.00115 -32.36338 -31.63687 -29.25114 -29.02127 -27.92378 -26.18041 -24.13876 -22.13421 -21.16501 -20.16647 -19.50649 -18.61088 -18.41615 -17.70373 -16.86471 -15.56327 -15.45750 -14.89062 -14.66934 -14.40416 -13.98610 -13.57891 -13.53093 -13.45025 -12.31328 -12.22818 -11.73892 -11.52018 -11.43624 -11.35172 -11.03528 -10.89293 -10.87219 -10.80592 -10.19795 -10.09180 -10.05874 -9.90367 -9.75059 -9.36329 -9.24230 -9.02860 -8.92266 -8.49188 -6.90064 -5.71578 -3.09464 0.40831 1.24263 1.61630 1.68719 3.34093 3.39097 3.41466 3.46851 3.48907 4.45599 4.55566 4.90785 5.10874 5.23806 5.34843 5.39938 5.56588 5.60984 5.81003 5.86513 5.94203 6.09983 6.15197 6.17771 6.33240 6.34788 6.56146 6.62818 6.69442 6.80858 6.97832 7.01061 7.28309 7.53919 7.74713 7.84494 8.18061 8.40205 9.11819 9.74219 10.54724 11.38183 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.037632 B = 0.003742 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.872191 B = 7480.194168 C = 7837.293573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.917 3.083 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.209 4.209 8 H 0.080 0.920 9 N -0.589 5.589 10 C 0.154 3.846 11 H 0.156 0.844 12 C -0.135 4.135 13 C -0.134 4.134 14 C 0.128 3.872 15 H 0.085 0.915 16 C 0.124 3.876 17 H 0.086 0.914 18 N -0.690 5.690 19 C 0.583 3.417 20 O -0.532 6.532 21 C 0.056 3.944 22 C -0.134 4.134 23 C -0.285 4.285 24 S 0.455 5.545 25 N -0.519 5.519 26 C -0.141 4.141 27 H 0.253 0.747 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.404 0.596 33 H 0.172 0.828 34 H 0.185 0.815 35 H 0.067 0.933 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.238 -21.146 -1.387 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.748 3.252 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.337 4.337 8 H 0.098 0.902 9 N -0.309 5.309 10 C 0.047 3.953 11 H 0.172 0.828 12 C -0.175 4.175 13 C -0.173 4.173 14 C 0.019 3.981 15 H 0.103 0.897 16 C 0.019 3.981 17 H 0.105 0.895 18 N -0.340 5.340 19 C 0.363 3.637 20 O -0.408 6.408 21 C -0.119 4.119 22 C -0.167 4.167 23 C -0.434 4.434 24 S 0.610 5.390 25 N -0.353 5.353 26 C -0.181 4.181 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.240 0.760 33 H 0.189 0.811 34 H 0.203 0.797 35 H 0.085 0.915 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.336 -20.862 -0.805 21.008 hybrid contribution 1.788 1.092 -0.660 2.197 sum -0.547 -19.770 -1.464 19.832 Atomic orbital electron populations 1.69447 1.04999 1.24858 1.57873 1.24701 0.95653 0.97508 1.02918 0.85950 0.78675 0.83417 0.77185 1.20536 1.21775 1.21830 1.19121 0.90423 0.81817 1.42329 0.90213 1.46474 1.01605 0.98762 1.84093 1.23771 0.87714 0.95175 0.88619 0.82756 1.23347 0.94982 0.97965 1.01177 1.23249 0.97689 0.97564 0.98829 1.23174 0.96200 0.86165 0.92530 0.89700 1.22772 0.98446 0.76302 1.00601 0.89541 1.46130 1.22073 1.07028 1.58773 1.17244 0.83974 0.83227 0.79265 1.90806 1.27013 1.78936 1.44072 1.21388 0.91059 0.97582 1.01872 1.21454 1.02426 0.90338 1.02467 1.27180 1.05346 1.02582 1.08293 1.80481 1.12913 0.99393 1.46222 1.72302 1.26610 1.12773 1.23603 1.23310 0.93950 0.98427 1.02447 0.93618 0.92607 0.93646 0.92840 0.92997 0.76026 0.81054 0.79718 0.91470 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.32 10.47 55.49 0.58 -25.74 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.92 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.21 -5.81 10.59 -15.06 -0.16 -5.97 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.59 -14.88 2.99 -145.82 -0.44 -15.31 16 10 C 0.15 3.53 4.72 -62.82 -0.30 3.23 16 11 H 0.16 4.02 5.52 -51.93 -0.29 3.73 16 12 C -0.14 -2.70 6.49 -23.22 -0.15 -2.85 16 13 C -0.13 -2.57 6.45 -23.20 -0.15 -2.72 16 14 C 0.13 2.77 5.31 -62.78 -0.33 2.43 16 15 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 16 C 0.12 2.42 3.14 -65.43 -0.21 2.22 16 17 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 18 N -0.69 -11.38 3.67 -52.38 -0.19 -11.58 16 19 C 0.58 9.76 7.81 -12.40 -0.10 9.67 16 20 O -0.53 -10.47 16.32 5.30 0.09 -10.38 16 21 C 0.06 0.77 6.66 -84.06 -0.56 0.21 16 22 C -0.13 -1.48 9.98 -40.26 -0.40 -1.89 16 23 C -0.29 -2.23 11.41 29.58 0.34 -1.90 16 24 S 0.46 3.70 23.20 -107.50 -2.49 1.20 16 25 N -0.52 -6.35 10.71 24.85 0.27 -6.09 16 26 C -0.14 -2.78 6.20 -24.26 -0.15 -2.93 16 27 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.04 0.78 7.82 -51.93 -0.41 0.38 16 30 H 0.05 0.92 6.38 -51.93 -0.33 0.59 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.40 6.08 7.39 -40.82 -0.30 5.78 16 33 H 0.17 1.81 7.99 -52.49 -0.42 1.39 16 34 H 0.19 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.06 0.94 7.39 -51.93 -0.38 0.56 16 LS Contribution 309.30 15.07 4.66 4.66 Total: -1.00 -31.12 309.30 -9.00 -40.12 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -4.18 Total: 6.93 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -2.26 Total: -0.94 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.22 Total: -58.71 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -2.49 Total: 1.20 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.12 -9.00 -40.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095598402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.118 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds