Wall clock time and date at job start Tue Mar 31 2020 06:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00160 * 2 1 4 4 H 1.48507 * 109.46988 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47318 * 299.99793 * 3 2 1 6 6 H 1.48500 * 109.47136 * 60.00110 * 3 2 1 7 7 C 1.38815 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99500 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00205 * 359.97438 * 7 2 1 10 10 C 1.50233 * 130.83989 * 0.05048 * 9 7 2 11 11 H 1.09000 * 115.85668 * 0.31727 * 10 9 7 12 12 C 1.55850 * 101.04997 * 233.93047 * 10 9 7 13 13 C 1.56688 * 103.59714 * 326.82905 * 12 10 9 14 14 C 1.50236 * 130.83608 * 179.97438 * 9 7 2 15 15 H 1.09001 * 115.86392 * 359.67966 * 14 9 7 16 16 C 1.55844 * 101.05043 * 234.00568 * 14 9 7 17 17 H 1.08998 * 110.76683 * 85.61944 * 16 14 9 18 18 N 1.46504 * 110.62603 * 208.57628 * 16 14 9 19 19 C 1.34775 * 119.99700 * 269.99642 * 18 16 14 20 20 O 1.21577 * 120.00495 * 0.02562 * 19 18 16 21 21 C 1.47690 * 119.99611 * 179.97438 * 19 18 16 22 22 C 1.39495 * 122.09936 * 179.74552 * 21 19 18 23 23 C 1.35006 * 111.68125 * 179.78891 * 22 21 19 24 24 S 1.71757 * 105.45079 * 0.42914 * 23 22 21 25 25 N 1.30601 * 122.10951 * 0.03472 * 21 19 18 26 26 C 1.54859 * 103.44583 * 327.06267 * 16 14 9 27 27 H 0.96995 * 119.99413 * 0.02562 * 1 2 3 28 28 H 1.09003 * 110.62493 * 85.55039 * 12 10 9 29 29 H 1.08998 * 110.62738 * 208.41179 * 12 10 9 30 30 H 1.09000 * 111.43386 * 241.93952 * 13 12 10 31 31 H 1.09005 * 110.61599 * 118.35801 * 13 12 10 32 32 H 0.97002 * 120.00037 * 90.00760 * 18 16 14 33 33 H 1.07998 * 124.15751 * 359.97438 * 22 21 19 34 34 H 1.07997 * 127.27546 * 180.16917 * 23 22 21 35 35 H 1.09001 * 110.62475 * 118.48681 * 26 16 14 36 36 H 1.08995 * 110.62614 * 241.51426 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1500 -2.6706 0.0014 11 1 -0.8014 -1.7966 -0.0053 12 6 -0.2745 -3.6099 1.2387 13 6 1.0787 -4.3998 1.2392 14 6 1.8186 -3.8072 0.0019 15 1 2.9012 -3.9344 -0.0044 16 6 1.0666 -4.3850 -1.2348 17 1 1.6229 -4.1894 -2.1515 18 7 0.8328 -5.8220 -1.0716 19 6 1.7475 -6.7079 -1.5132 20 8 2.7668 -6.3146 -2.0465 21 6 1.5120 -8.1566 -1.3481 22 6 2.4262 -9.1116 -1.7932 23 6 2.0034 -10.3668 -1.5317 24 16 0.4807 -10.1848 -0.7581 25 7 0.4324 -8.6243 -0.7814 26 6 -0.2745 -3.6107 -1.2348 27 1 -0.4849 0.8401 -0.0004 28 1 -0.3821 -3.0273 2.1537 29 1 -1.1152 -4.2933 1.1190 30 1 0.9152 -5.4700 1.1126 31 1 1.6386 -4.2013 2.1532 32 1 0.0196 -6.1359 -0.6460 33 1 3.3590 -8.8758 -2.2838 34 1 2.5128 -11.2903 -1.7640 35 1 -0.3819 -3.0288 -2.1502 36 1 -1.1134 -4.2959 -1.1134 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095598402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:02 Heat of formation + Delta-G solvation = 40.681954 kcal Electronic energy + Delta-G solvation = -21395.913353 eV Core-core repulsion = 18200.589448 eV Total energy + Delta-G solvation = -3195.323904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.75884 -40.59877 -38.98162 -35.56131 -34.24146 -32.49042 -30.97863 -30.79136 -29.51366 -27.35386 -26.01940 -23.32666 -22.60556 -21.50083 -21.06072 -20.19665 -19.27719 -19.05308 -18.53006 -16.99351 -16.80061 -16.69586 -16.12454 -15.72449 -15.58153 -14.84870 -14.72069 -14.23069 -14.07375 -13.90219 -13.50402 -13.23821 -12.88916 -12.81189 -12.65031 -12.43010 -12.25712 -12.17681 -11.99820 -11.91440 -11.59502 -11.25570 -11.09057 -10.96742 -10.82476 -10.82113 -10.12346 -9.70247 -8.88266 -7.80620 -5.20438 -0.40340 0.57732 0.76791 0.82976 1.46677 1.47154 1.57140 2.10594 2.18206 2.49811 3.32984 3.46934 3.71034 3.86227 3.94255 4.07302 4.12038 4.32470 4.42676 4.45325 4.56684 4.58271 4.66575 4.75784 4.88464 4.92401 5.01199 5.10398 5.16020 5.26147 5.31894 5.42045 5.52036 5.68178 5.85672 6.24504 6.51372 7.03648 7.12489 7.67294 8.53363 9.26747 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.037632 B = 0.003742 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.872191 B = 7480.194168 C = 7837.293573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.062 4.062 3 Si 0.978 3.022 4 H -0.273 1.273 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.073 0.927 9 N -0.615 5.615 10 C 0.140 3.860 11 H 0.124 0.876 12 C -0.124 4.124 13 C -0.118 4.118 14 C 0.120 3.880 15 H 0.070 0.930 16 C 0.142 3.858 17 H 0.061 0.939 18 N -0.682 5.682 19 C 0.581 3.419 20 O -0.572 6.572 21 C 0.029 3.971 22 C -0.158 4.158 23 C -0.265 4.265 24 S 0.543 5.457 25 N -0.551 5.551 26 C -0.127 4.127 27 H 0.249 0.751 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.415 0.585 33 H 0.167 0.833 34 H 0.224 0.776 35 H 0.050 0.950 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.953 -24.459 -0.963 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.255 4.255 3 Si 0.807 3.193 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.091 0.909 9 N -0.337 5.337 10 C 0.034 3.966 11 H 0.142 0.858 12 C -0.163 4.163 13 C -0.158 4.158 14 C 0.012 3.988 15 H 0.088 0.912 16 C 0.036 3.964 17 H 0.079 0.921 18 N -0.333 5.333 19 C 0.364 3.636 20 O -0.451 6.451 21 C -0.144 4.144 22 C -0.190 4.190 23 C -0.414 4.414 24 S 0.697 5.303 25 N -0.388 5.388 26 C -0.167 4.167 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.253 0.747 33 H 0.185 0.815 34 H 0.241 0.759 35 H 0.069 0.931 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.054 -24.222 -0.378 24.417 hybrid contribution 1.973 1.906 -0.779 2.851 sum -1.082 -22.316 -1.156 22.373 Atomic orbital electron populations 1.69669 1.05935 1.25065 1.58696 1.25429 0.96561 1.00220 1.03297 0.85011 0.77868 0.79680 0.76769 1.19819 1.21847 1.21779 1.19361 0.90565 0.83418 1.42086 0.90910 1.46709 1.02920 0.99379 1.84710 1.23686 0.86106 0.95397 0.91426 0.85846 1.23230 0.96554 0.97751 0.98798 1.23136 0.96735 0.98753 0.97156 1.23297 0.95926 0.84940 0.94681 0.91231 1.22241 0.97591 0.78233 0.98370 0.92100 1.45883 1.22702 1.05534 1.59196 1.17757 0.83022 0.84860 0.77976 1.90777 1.28533 1.80125 1.45623 1.20943 0.92798 0.95682 1.04928 1.21465 1.02466 0.91268 1.03814 1.27622 1.05073 1.02707 1.05982 1.80195 1.11372 0.95707 1.43027 1.71957 1.26655 1.16180 1.24047 1.23140 0.95190 0.98170 1.00187 0.94080 0.94256 0.90007 0.90154 0.93600 0.74743 0.81544 0.75932 0.93098 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.40 10.47 21.65 0.23 -55.17 16 2 C -0.06 -3.55 5.50 84.86 0.47 -3.09 16 3 Si 0.98 46.62 29.55 68.60 2.03 48.64 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 7 C -0.23 -12.96 10.59 84.03 0.89 -12.07 16 8 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 9 N -0.62 -32.02 2.99 -615.26 -1.84 -33.86 16 10 C 0.14 6.49 4.72 46.22 0.22 6.71 16 11 H 0.12 6.62 5.52 -2.39 -0.01 6.61 16 12 C -0.12 -4.81 6.49 32.87 0.21 -4.60 16 13 C -0.12 -4.45 6.45 32.88 0.21 -4.23 16 14 C 0.12 5.26 5.31 46.24 0.25 5.50 16 15 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 16 C 0.14 5.61 3.14 46.61 0.15 5.75 16 17 H 0.06 2.72 7.58 -2.39 -0.02 2.70 16 18 N -0.68 -21.93 3.67 -437.90 -1.61 -23.54 16 19 C 0.58 19.38 7.81 86.74 0.68 20.06 16 20 O -0.57 -23.14 16.32 -3.96 -0.06 -23.21 16 21 C 0.03 0.74 6.66 42.13 0.28 1.02 16 22 C -0.16 -3.20 9.98 21.83 0.22 -2.98 16 23 C -0.27 -3.06 11.41 67.08 0.77 -2.30 16 24 S 0.54 6.50 23.20 -56.49 -1.31 5.19 16 25 N -0.55 -11.94 10.71 -75.30 -0.81 -12.75 16 26 C -0.13 -4.97 6.20 32.20 0.20 -4.77 16 27 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 2.57 7.82 -2.39 -0.02 2.55 16 30 H 0.08 2.59 6.38 -2.39 -0.02 2.57 16 31 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.41 11.54 7.39 -92.71 -0.68 10.86 16 33 H 0.17 3.43 7.99 -2.91 -0.02 3.40 16 34 H 0.22 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.09 2.87 7.39 -2.39 -0.02 2.85 16 Total: -1.00 -70.84 309.30 1.59 -69.25 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.44 Total: 20.45 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 4.53 Total: 5.00 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -4.03 Total: -125.32 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.06 Total: -23.21 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.64 kcal Atomic # 16 Polarization: 6.50 SS G_CDS: -1.31 Total: 5.19 kcal Total: -70.84 1.59 -69.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095598402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.929 kcal (2) G-P(sol) polarization free energy of solvation -70.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds