Wall clock time and date at job start Tue Mar 31 2020 06:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 119.99988 * 2 1 4 4 H 1.48499 * 109.47006 * 239.99762 * 3 2 1 5 5 H 1.48502 * 109.47341 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47197 * 120.00011 * 3 2 1 7 7 C 1.38815 * 119.99655 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99513 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00404 * 359.97438 * 7 2 1 10 10 C 1.50236 * 130.83646 * 359.97438 * 9 7 2 11 11 H 1.09002 * 115.86289 * 359.65965 * 10 9 7 12 12 C 1.55849 * 101.05100 * 233.98515 * 10 9 7 13 13 C 1.54854 * 103.44279 * 327.06235 * 12 10 9 14 14 C 1.50242 * 130.84048 * 180.02562 * 9 7 2 15 15 H 1.09003 * 115.85320 * 359.62442 * 14 9 7 16 16 C 1.55848 * 101.04960 * 233.94903 * 14 9 7 17 17 H 1.09002 * 110.62183 * 85.71308 * 16 14 9 18 18 N 1.46499 * 110.62543 * 208.57182 * 16 14 9 19 19 C 1.34777 * 119.99923 * 274.08969 * 18 16 14 20 20 O 1.21622 * 120.00140 * 359.72378 * 19 18 16 21 21 C 1.47255 * 120.00312 * 179.72427 * 19 18 16 22 22 N 1.30556 * 125.53631 * 359.69605 * 21 19 18 23 23 C 1.30706 * 115.90447 * 179.77913 * 22 21 19 24 24 C 1.34228 * 115.78161 * 0.51550 * 23 22 21 25 25 S 1.71071 * 109.09454 * 359.72608 * 24 23 22 26 26 C 1.54844 * 103.44728 * 327.06278 * 16 14 9 27 27 H 0.96999 * 119.99834 * 359.97438 * 1 2 3 28 28 H 1.08998 * 110.62913 * 85.55061 * 12 10 9 29 29 H 1.09001 * 110.62615 * 208.41639 * 12 10 9 30 30 H 1.09003 * 110.62555 * 241.50902 * 13 12 10 31 31 H 1.08999 * 110.62572 * 118.48797 * 13 12 10 32 32 H 0.96996 * 119.99830 * 93.81415 * 18 16 14 33 33 H 1.07998 * 122.10902 * 180.21624 * 23 22 21 34 34 H 1.08002 * 125.45785 * 179.72462 * 24 23 22 35 35 H 1.09000 * 110.63284 * 118.48623 * 26 16 14 36 36 H 1.09001 * 110.62785 * 241.50736 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1499 -2.6706 0.0005 11 1 -0.8014 -1.7966 0.0072 12 6 -0.2733 -3.6106 1.2374 13 6 1.0678 -4.3849 1.2363 14 6 1.8187 -3.8073 -0.0005 15 1 2.9013 -3.9343 -0.0070 16 6 1.0665 -4.3849 -1.2372 17 1 1.6254 -4.1893 -2.1523 18 7 0.8327 -5.8219 -1.0742 19 6 1.7827 -6.7050 -1.4406 20 8 2.8320 -6.3091 -1.9112 21 6 1.5503 -8.1491 -1.2712 22 7 0.4712 -8.6909 -0.7746 23 6 0.4635 -9.9966 -0.7147 24 6 1.5714 -10.6081 -1.1622 25 16 2.6855 -9.4258 -1.6984 26 6 -0.2745 -3.6106 -1.2369 27 1 -0.4850 0.8400 0.0004 28 1 -0.3799 -3.0288 2.1529 29 1 -1.1141 -4.2940 1.1180 30 1 0.8937 -5.4541 1.1151 31 1 1.6262 -4.1869 2.1512 32 1 -0.0041 -6.1376 -0.6989 33 1 -0.3792 -10.5484 -0.3251 34 1 1.7337 -11.6757 -1.1807 35 1 -0.3822 -3.0286 -2.1522 36 1 -1.1135 -4.2958 -1.1155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096226670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:28 Heat of formation + Delta-G solvation = 65.540214 kcal Electronic energy + Delta-G solvation = -21336.483730 eV Core-core repulsion = 18142.237761 eV Total energy + Delta-G solvation = -3194.245969 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.34644 -39.51122 -38.16408 -34.00068 -32.35620 -30.86015 -29.25903 -29.00405 -27.71712 -26.18601 -24.16992 -22.31927 -21.27488 -20.14535 -19.43100 -18.84672 -18.28599 -17.17959 -16.78819 -15.66739 -15.42038 -15.09333 -14.85229 -14.51085 -13.99307 -13.76216 -13.61599 -13.55713 -12.33353 -12.25045 -11.76065 -11.73355 -11.48684 -11.04629 -10.90600 -10.89325 -10.81416 -10.41657 -10.20342 -10.10915 -9.96005 -9.91107 -9.77557 -9.39954 -9.24781 -9.15465 -8.91754 -8.53627 -6.91094 -5.71693 -3.09668 0.07359 0.96514 1.50329 2.23658 3.23419 3.32307 3.42125 3.45867 3.47138 4.08823 4.47262 4.82290 4.93234 5.10412 5.22097 5.39015 5.54139 5.77244 5.80677 5.85499 5.99051 6.07571 6.14813 6.29691 6.35713 6.54615 6.61834 6.65990 6.80865 6.95490 7.00446 7.24035 7.28567 7.52697 7.69373 7.81560 8.17363 8.30125 9.11363 9.73868 10.54093 11.37862 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.036265 B = 0.003799 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.908900 B = 7368.483675 C = 7754.842054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.918 3.082 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.211 4.211 8 H 0.079 0.921 9 N -0.589 5.589 10 C 0.154 3.846 11 H 0.156 0.844 12 C -0.137 4.137 13 C -0.132 4.132 14 C 0.128 3.872 15 H 0.087 0.913 16 C 0.125 3.875 17 H 0.086 0.914 18 N -0.681 5.681 19 C 0.588 3.412 20 O -0.530 6.530 21 C -0.007 4.007 22 N -0.429 5.429 23 C 0.029 3.971 24 C -0.288 4.288 25 S 0.242 5.758 26 C -0.140 4.140 27 H 0.254 0.746 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.406 0.594 33 H 0.177 0.823 34 H 0.182 0.818 35 H 0.068 0.932 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 -19.963 -1.711 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.748 3.252 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.339 4.339 8 H 0.097 0.903 9 N -0.309 5.309 10 C 0.047 3.953 11 H 0.173 0.827 12 C -0.177 4.177 13 C -0.171 4.171 14 C 0.019 3.981 15 H 0.105 0.895 16 C 0.019 3.981 17 H 0.104 0.896 18 N -0.332 5.332 19 C 0.369 3.631 20 O -0.407 6.407 21 C -0.282 4.282 22 N -0.147 5.147 23 C -0.128 4.128 24 C -0.429 4.429 25 S 0.496 5.504 26 C -0.180 4.180 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.242 0.758 33 H 0.194 0.806 34 H 0.200 0.800 35 H 0.087 0.913 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.842 -18.926 -2.321 19.087 hybrid contribution -0.764 -0.223 0.622 1.010 sum 0.079 -19.150 -1.699 19.225 Atomic orbital electron populations 1.69427 1.04997 1.25114 1.57640 1.24699 0.95646 0.97506 1.02833 0.86098 0.78366 0.82821 0.77902 1.21188 1.21590 1.21266 1.19026 0.90373 0.81839 1.42650 0.90312 1.46484 1.01613 0.98761 1.84072 1.23796 0.87682 0.95190 0.88601 0.82742 1.23056 0.95162 0.98190 1.01276 1.22915 0.97643 0.97708 0.98864 1.23199 0.96273 0.86170 0.92436 0.89466 1.22825 0.98630 0.75903 1.00694 0.89557 1.46063 1.18581 1.06965 1.61571 1.16747 0.84628 0.82396 0.79283 1.90864 1.25572 1.78686 1.45533 1.27981 0.94211 0.99853 1.06195 1.66829 1.22870 1.11262 1.13708 1.21727 0.99557 0.88705 1.02803 1.26885 0.99929 1.06674 1.09430 1.84099 1.17586 0.95148 1.53540 1.23303 0.93794 0.98399 1.02505 0.93500 0.92631 0.93518 0.92985 0.92990 0.75787 0.80637 0.80034 0.91345 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.10 10.47 55.49 0.58 -25.52 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.92 21.99 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.21 -5.81 10.59 -15.06 -0.16 -5.97 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.59 -14.70 2.99 -145.81 -0.44 -15.13 16 10 C 0.15 3.47 4.72 -62.77 -0.30 3.18 16 11 H 0.16 3.97 5.52 -51.93 -0.29 3.68 16 12 C -0.14 -2.70 6.44 -24.23 -0.16 -2.85 16 13 C -0.13 -2.51 6.32 -24.26 -0.15 -2.66 16 14 C 0.13 2.72 5.35 -62.82 -0.34 2.38 16 15 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 16 C 0.13 2.37 3.08 -65.44 -0.20 2.17 16 17 H 0.09 1.79 7.69 -51.93 -0.40 1.39 16 18 N -0.68 -10.89 3.63 -52.52 -0.19 -11.08 16 19 C 0.59 9.62 7.80 -12.60 -0.10 9.52 16 20 O -0.53 -10.16 16.67 5.26 0.09 -10.07 16 21 C -0.01 -0.10 7.46 -14.43 -0.11 -0.20 16 22 N -0.43 -5.34 10.24 -11.51 -0.12 -5.46 16 23 C 0.03 0.27 11.24 -19.44 -0.22 0.06 16 24 C -0.29 -2.31 11.09 29.32 0.33 -1.98 16 25 S 0.24 2.49 23.03 -107.50 -2.48 0.01 16 26 C -0.14 -2.68 6.20 -24.21 -0.15 -2.83 16 27 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.79 7.82 -51.93 -0.41 0.38 16 30 H 0.05 0.88 6.48 -51.93 -0.34 0.55 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.41 5.86 7.67 -40.82 -0.31 5.55 16 33 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.06 0.93 7.35 -51.93 -0.38 0.55 16 LS Contribution 311.03 15.07 4.69 4.69 Total: -1.00 -30.44 311.03 -8.74 -39.18 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.21 Total: 6.03 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -1.65 Total: 0.40 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.16 Total: -57.20 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.48 Total: 0.01 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.44 -8.74 -39.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096226670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.719 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds