Wall clock time and date at job start Tue Mar 31 2020 06:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 119.99988 * 2 1 4 4 H 1.48499 * 109.47006 * 239.99762 * 3 2 1 5 5 H 1.48502 * 109.47341 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47197 * 120.00011 * 3 2 1 7 7 C 1.38815 * 119.99655 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99513 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00404 * 359.97438 * 7 2 1 10 10 C 1.50236 * 130.83646 * 359.97438 * 9 7 2 11 11 H 1.09002 * 115.86289 * 359.65965 * 10 9 7 12 12 C 1.55849 * 101.05100 * 233.98515 * 10 9 7 13 13 C 1.54854 * 103.44279 * 327.06235 * 12 10 9 14 14 C 1.50242 * 130.84048 * 180.02562 * 9 7 2 15 15 H 1.09003 * 115.85320 * 359.62442 * 14 9 7 16 16 C 1.55848 * 101.04960 * 233.94903 * 14 9 7 17 17 H 1.09002 * 110.62183 * 85.71308 * 16 14 9 18 18 N 1.46499 * 110.62543 * 208.57182 * 16 14 9 19 19 C 1.34777 * 119.99923 * 274.08969 * 18 16 14 20 20 O 1.21622 * 120.00140 * 359.72378 * 19 18 16 21 21 C 1.47255 * 120.00312 * 179.72427 * 19 18 16 22 22 N 1.30556 * 125.53631 * 359.69605 * 21 19 18 23 23 C 1.30706 * 115.90447 * 179.77913 * 22 21 19 24 24 C 1.34228 * 115.78161 * 0.51550 * 23 22 21 25 25 S 1.71071 * 109.09454 * 359.72608 * 24 23 22 26 26 C 1.54844 * 103.44728 * 327.06278 * 16 14 9 27 27 H 0.96999 * 119.99834 * 359.97438 * 1 2 3 28 28 H 1.08998 * 110.62913 * 85.55061 * 12 10 9 29 29 H 1.09001 * 110.62615 * 208.41639 * 12 10 9 30 30 H 1.09003 * 110.62555 * 241.50902 * 13 12 10 31 31 H 1.08999 * 110.62572 * 118.48797 * 13 12 10 32 32 H 0.96996 * 119.99830 * 93.81415 * 18 16 14 33 33 H 1.07998 * 122.10902 * 180.21624 * 23 22 21 34 34 H 1.08002 * 125.45785 * 179.72462 * 24 23 22 35 35 H 1.09000 * 110.63284 * 118.48623 * 26 16 14 36 36 H 1.09001 * 110.62785 * 241.50736 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1499 -2.6706 0.0005 11 1 -0.8014 -1.7966 0.0072 12 6 -0.2733 -3.6106 1.2374 13 6 1.0678 -4.3849 1.2363 14 6 1.8187 -3.8073 -0.0005 15 1 2.9013 -3.9343 -0.0070 16 6 1.0665 -4.3849 -1.2372 17 1 1.6254 -4.1893 -2.1523 18 7 0.8327 -5.8219 -1.0742 19 6 1.7827 -6.7050 -1.4406 20 8 2.8320 -6.3091 -1.9112 21 6 1.5503 -8.1491 -1.2712 22 7 0.4712 -8.6909 -0.7746 23 6 0.4635 -9.9966 -0.7147 24 6 1.5714 -10.6081 -1.1622 25 16 2.6855 -9.4258 -1.6984 26 6 -0.2745 -3.6106 -1.2369 27 1 -0.4850 0.8400 0.0004 28 1 -0.3799 -3.0288 2.1529 29 1 -1.1141 -4.2940 1.1180 30 1 0.8937 -5.4541 1.1151 31 1 1.6262 -4.1869 2.1512 32 1 -0.0041 -6.1376 -0.6989 33 1 -0.3792 -10.5484 -0.3251 34 1 1.7337 -11.6757 -1.1807 35 1 -0.3822 -3.0286 -2.1522 36 1 -1.1135 -4.2958 -1.1155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096226670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:27 Heat of formation + Delta-G solvation = 45.594029 kcal Electronic energy + Delta-G solvation = -21337.348662 eV Core-core repulsion = 18142.237761 eV Total energy + Delta-G solvation = -3195.110901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.64159 -40.62049 -39.54247 -35.53830 -34.24232 -31.79978 -31.01319 -30.64295 -29.23904 -27.25581 -26.03602 -23.45472 -22.73170 -21.58634 -20.84905 -20.26293 -19.46516 -18.81719 -18.00966 -16.99585 -16.78798 -16.68987 -16.11425 -15.90848 -15.66927 -15.02162 -14.78330 -14.43308 -14.06367 -13.89409 -13.48938 -13.22553 -12.88098 -12.77904 -12.63146 -12.43861 -12.41677 -12.01220 -11.92039 -11.63553 -11.54008 -11.15494 -11.05163 -10.87402 -10.80078 -10.69095 -10.15144 -9.86309 -8.86977 -7.78684 -5.18481 -0.77880 0.13314 0.75991 1.34602 1.47814 1.50292 1.56233 2.10969 2.16942 2.51066 3.10161 3.34703 3.51646 3.88228 4.02640 4.09164 4.14262 4.32580 4.39033 4.42785 4.44890 4.58422 4.69145 4.77616 4.94327 5.05511 5.11459 5.13420 5.15741 5.30749 5.42804 5.52104 5.69004 5.87915 6.25132 6.33174 6.59097 7.03601 7.08207 7.69209 8.55124 9.28191 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.036265 B = 0.003799 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.908900 B = 7368.483675 C = 7754.842054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.061 4.061 3 Si 0.977 3.023 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.073 0.927 9 N -0.616 5.616 10 C 0.140 3.860 11 H 0.124 0.876 12 C -0.126 4.126 13 C -0.118 4.118 14 C 0.120 3.880 15 H 0.072 0.928 16 C 0.144 3.856 17 H 0.063 0.937 18 N -0.674 5.674 19 C 0.591 3.409 20 O -0.568 6.568 21 C -0.056 4.056 22 N -0.433 5.433 23 C 0.011 3.989 24 C -0.253 4.253 25 S 0.258 5.742 26 C -0.126 4.126 27 H 0.250 0.750 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.417 0.583 33 H 0.207 0.793 34 H 0.223 0.777 35 H 0.053 0.947 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.118 -23.247 -1.443 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.254 4.254 3 Si 0.806 3.194 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.356 4.356 8 H 0.091 0.909 9 N -0.338 5.338 10 C 0.034 3.966 11 H 0.141 0.859 12 C -0.165 4.165 13 C -0.157 4.157 14 C 0.012 3.988 15 H 0.090 0.910 16 C 0.037 3.963 17 H 0.081 0.919 18 N -0.326 5.326 19 C 0.374 3.626 20 O -0.447 6.447 21 C -0.329 4.329 22 N -0.152 5.152 23 C -0.146 4.146 24 C -0.393 4.393 25 S 0.512 5.488 26 C -0.165 4.165 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.255 0.745 33 H 0.224 0.776 34 H 0.240 0.760 35 H 0.071 0.929 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.238 -22.249 -2.044 22.344 hybrid contribution -0.542 0.577 0.523 0.949 sum -0.304 -21.673 -1.521 21.728 Atomic orbital electron populations 1.69656 1.05903 1.25201 1.58549 1.25418 0.96545 1.00187 1.03273 0.85170 0.77177 0.79216 0.77853 1.20869 1.21650 1.20836 1.19286 0.90567 0.83459 1.42317 0.90930 1.46720 1.02949 0.99384 1.84722 1.23711 0.86050 0.95423 0.91453 0.85873 1.22949 0.96720 0.97971 0.98899 1.22800 0.96730 0.98952 0.97213 1.23315 0.96003 0.84892 0.94594 0.91006 1.22279 0.97760 0.77800 0.98455 0.91877 1.45793 1.19230 1.05524 1.62009 1.17088 0.83721 0.83794 0.77961 1.90837 1.27015 1.79797 1.47084 1.27327 0.96376 0.98787 1.10368 1.66797 1.22540 1.12948 1.12919 1.22235 1.01119 0.87806 1.03409 1.27414 0.98069 1.08075 1.05788 1.84105 1.17313 0.94701 1.52714 1.23131 0.95085 0.98136 1.00182 0.94076 0.94410 0.89844 0.90284 0.93763 0.74496 0.77598 0.76019 0.92861 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.98 10.47 21.65 0.23 -54.75 16 2 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 3 Si 0.98 46.28 29.55 68.60 2.03 48.31 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.23 -12.96 10.59 84.03 0.89 -12.07 16 8 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.62 -31.66 2.99 -615.21 -1.84 -33.50 16 10 C 0.14 6.38 4.72 46.25 0.22 6.60 16 11 H 0.12 6.53 5.52 -2.39 -0.01 6.52 16 12 C -0.13 -4.83 6.44 32.21 0.21 -4.62 16 13 C -0.12 -4.37 6.32 32.19 0.20 -4.16 16 14 C 0.12 5.18 5.35 46.21 0.25 5.43 16 15 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 16 C 0.14 5.49 3.08 46.61 0.14 5.63 16 17 H 0.06 2.71 7.69 -2.39 -0.02 2.69 16 18 N -0.67 -20.87 3.63 -438.33 -1.59 -22.46 16 19 C 0.59 19.04 7.80 86.61 0.68 19.72 16 20 O -0.57 -22.16 16.67 -4.10 -0.07 -22.23 16 21 C -0.06 -1.42 7.46 87.26 0.65 -0.77 16 22 N -0.43 -9.56 10.24 -190.32 -1.95 -11.51 16 23 C 0.01 0.16 11.24 83.94 0.94 1.10 16 24 C -0.25 -2.87 11.09 66.90 0.74 -2.13 16 25 S 0.26 4.67 23.03 -56.49 -1.30 3.37 16 26 C -0.13 -4.76 6.20 32.23 0.20 -4.56 16 27 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 2.57 7.82 -2.39 -0.02 2.55 16 30 H 0.08 2.51 6.48 -2.39 -0.02 2.49 16 31 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.42 11.06 7.67 -92.71 -0.71 10.35 16 33 H 0.21 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.22 0.68 8.06 -2.91 -0.02 0.65 16 35 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.09 2.82 7.35 -2.39 -0.02 2.80 16 Total: -1.00 -69.09 311.03 1.50 -67.59 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.41 Total: 18.04 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 5.59 Total: 7.14 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -5.15 Total: -122.21 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.07 Total: -22.23 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 16 Polarization: 4.67 SS G_CDS: -1.30 Total: 3.37 kcal Total: -69.09 1.50 -67.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096226670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.184 kcal (2) G-P(sol) polarization free energy of solvation -69.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds