Wall clock time and date at job start Tue Mar 31 2020 06:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00263 * 2 1 4 4 H 1.48500 * 109.47244 * 89.99682 * 3 2 1 5 5 H 1.48502 * 109.47169 * 329.99765 * 3 2 1 6 6 H 1.48500 * 109.47269 * 209.99924 * 3 2 1 7 7 C 1.38808 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00162 * 21.19797 * 7 2 1 9 9 N 1.36936 * 120.00008 * 201.20053 * 7 2 1 10 10 C 1.50239 * 130.84022 * 9.78414 * 9 7 2 11 11 H 1.09003 * 115.85699 * 359.67243 * 10 9 7 12 12 C 1.56860 * 100.58308 * 234.63150 * 10 9 7 13 13 C 1.54853 * 103.35407 * 326.64942 * 12 10 9 14 14 C 1.50243 * 130.83808 * 190.11326 * 9 7 2 15 15 H 1.08998 * 115.85890 * 359.61191 * 14 9 7 16 16 C 1.55841 * 101.05039 * 233.93360 * 14 9 7 17 17 H 1.09001 * 110.62526 * 208.57318 * 16 14 9 18 18 N 1.46500 * 110.62653 * 85.55921 * 16 14 9 19 19 C 1.34775 * 120.00211 * 155.00103 * 18 16 14 20 20 O 1.21685 * 119.99852 * 359.97438 * 19 18 16 21 21 C 1.46681 * 120.00152 * 179.97438 * 19 18 16 22 22 C 1.35659 * 126.13122 * 179.97438 * 21 19 18 23 23 N 1.30947 * 114.19060 * 179.97438 * 22 21 19 24 24 C 1.29428 * 117.36386 * 359.97438 * 23 22 21 25 25 S 1.70952 * 110.38944 * 359.72746 * 24 23 22 26 26 C 1.55472 * 103.33084 * 326.97846 * 16 14 9 27 27 H 0.96994 * 119.99799 * 174.94013 * 1 2 3 28 28 H 1.09001 * 110.43113 * 208.30842 * 12 10 9 29 29 H 1.08998 * 110.90696 * 85.22493 * 12 10 9 30 30 H 1.08996 * 110.62628 * 241.78625 * 13 12 10 31 31 H 1.08995 * 110.62388 * 118.76957 * 13 12 10 32 32 H 0.96998 * 119.99827 * 334.98957 * 18 16 14 33 33 H 1.07999 * 122.90338 * 359.96520 * 22 21 19 34 34 H 1.07996 * 124.80473 * 180.02562 * 24 23 22 35 35 H 1.09001 * 110.61076 * 241.58938 * 26 16 14 36 36 H 1.08999 * 110.89697 * 118.54610 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 1.4001 5 1 1.4478 2.6526 -0.7001 6 1 3.5479 1.4400 -0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.5250 -2.1060 -0.3373 9 7 3.3101 -1.2422 0.4294 10 6 4.1494 -0.2045 1.1193 11 1 3.6597 0.7493 1.3158 12 6 5.3810 -0.1393 0.1500 13 6 5.5069 -1.5936 -0.3668 14 6 4.3379 -2.3350 0.3492 15 1 4.0105 -3.2620 -0.1216 16 6 4.7648 -2.4540 1.8433 17 1 5.7952 -2.8006 1.9218 18 7 3.8608 -3.3501 2.5685 19 6 4.2894 -3.9883 3.6755 20 8 5.4274 -3.8204 4.0724 21 6 3.3841 -4.8851 4.4019 22 6 3.6834 -5.5868 5.5237 23 7 2.6965 -6.3172 5.9790 24 6 1.5808 -6.2847 5.3238 25 16 1.7100 -5.2369 3.9792 26 6 4.6358 -0.9969 2.3700 27 1 -0.4849 -0.8367 -0.0741 28 1 6.2787 0.1537 0.6946 29 1 5.1905 0.5465 -0.6755 30 1 6.4669 -2.0217 -0.0786 31 1 5.3787 -1.6290 -1.4486 32 1 2.9537 -3.4841 2.2520 33 1 4.6519 -5.5467 5.9999 34 1 0.6924 -6.8374 5.5915 35 1 5.6027 -0.6242 2.7084 36 1 3.9004 -0.9371 3.1722 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096854330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:31 Heat of formation + Delta-G solvation = 65.656209 kcal Electronic energy + Delta-G solvation = -21475.107830 eV Core-core repulsion = 18280.866891 eV Total energy + Delta-G solvation = -3194.240939 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.29981 -39.64968 -38.39220 -34.07896 -32.71593 -30.92558 -29.56323 -29.18667 -28.37332 -26.05356 -23.69042 -22.65828 -20.86675 -20.21325 -20.04921 -19.29834 -18.63599 -17.46664 -16.76202 -16.19763 -15.76900 -15.22906 -14.82280 -14.32223 -14.14100 -13.97736 -13.71996 -13.52888 -13.37159 -12.80240 -11.91519 -11.73872 -11.68323 -11.57138 -11.36215 -10.97650 -10.74242 -10.57540 -10.23635 -9.98872 -9.84085 -9.68735 -9.61479 -9.47594 -9.30865 -9.23366 -8.83732 -8.62353 -7.29994 -6.37797 -3.26504 0.12898 1.06312 1.45842 2.37894 3.20951 3.29010 3.32299 3.45494 3.61610 4.10889 4.52827 4.59756 4.86061 4.97572 5.10201 5.20362 5.27190 5.33666 5.58763 5.63532 5.77012 5.82656 5.86433 5.90449 5.98259 6.12308 6.20742 6.37709 6.44297 6.56129 6.65842 6.82374 6.90542 7.31001 7.38605 7.67570 8.18695 8.25992 8.90629 9.45300 10.24599 11.11061 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019524 B = 0.005313 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.780670 B = 5268.658602 C = 6193.872396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.020 4.020 3 Si 1.058 2.942 4 H -0.296 1.296 5 H -0.301 1.301 6 H -0.274 1.274 7 C -0.314 4.314 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.118 3.882 11 H 0.095 0.905 12 C -0.140 4.140 13 C -0.127 4.127 14 C 0.129 3.871 15 H 0.094 0.906 16 C 0.132 3.868 17 H 0.090 0.910 18 N -0.699 5.699 19 C 0.591 3.409 20 O -0.536 6.536 21 C -0.284 4.284 22 C 0.107 3.893 23 N -0.478 5.478 24 C 0.021 3.979 25 S 0.186 5.814 26 C -0.136 4.136 27 H 0.262 0.738 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.403 0.597 33 H 0.187 0.813 34 H 0.204 0.796 35 H 0.065 0.935 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.347 -9.358 5.955 12.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.220 4.220 3 Si 0.892 3.108 4 H -0.225 1.225 5 H -0.230 1.230 6 H -0.201 1.201 7 C -0.441 4.441 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.011 3.989 11 H 0.112 0.888 12 C -0.179 4.179 13 C -0.167 4.167 14 C 0.021 3.979 15 H 0.111 0.889 16 C 0.025 3.975 17 H 0.108 0.892 18 N -0.348 5.348 19 C 0.376 3.624 20 O -0.415 6.415 21 C -0.408 4.408 22 C -0.050 4.050 23 N -0.192 5.192 24 C -0.274 4.274 25 S 0.440 5.560 26 C -0.176 4.176 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.239 0.761 33 H 0.204 0.796 34 H 0.221 0.779 35 H 0.084 0.916 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.999 -7.640 5.862 11.345 hybrid contribution 0.385 -1.690 0.235 1.749 sum 6.384 -9.330 6.097 12.844 Atomic orbital electron populations 1.70932 1.05639 1.29744 1.50234 1.25737 0.96356 1.00780 0.99132 0.83924 0.74990 0.76027 0.75856 1.22514 1.22963 1.20075 1.20041 0.84343 0.96328 1.43386 0.90389 1.46941 1.08592 1.10629 1.66584 1.23423 0.90576 0.93522 0.91338 0.88781 1.23359 0.97948 0.96907 0.99731 1.22870 0.97527 0.96128 1.00156 1.23137 0.89737 0.93433 0.91632 0.88851 1.22729 0.92820 0.88814 0.93097 0.89178 1.45926 1.17025 1.45351 1.26496 1.16738 0.85998 0.79236 0.80460 1.90805 1.18537 1.64829 1.67337 1.25980 0.98962 1.10696 1.05195 1.22217 0.99196 0.91542 0.92090 1.66270 0.99767 1.21944 1.31183 1.28816 1.00629 1.01824 0.96084 1.84396 1.06167 1.37965 1.27480 1.23403 1.00485 0.95098 0.98622 0.92813 0.92333 0.91372 0.92360 0.91749 0.76121 0.79574 0.77902 0.91591 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.71 13.70 55.49 0.76 -26.95 16 2 C -0.02 -0.55 5.49 -17.43 -0.10 -0.65 16 3 Si 1.06 25.40 25.00 -169.99 -4.25 21.15 16 4 H -0.30 -6.86 6.60 56.52 0.37 -6.49 16 5 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.27 -6.03 4.91 56.52 0.28 -5.75 16 7 C -0.31 -8.25 10.81 -15.06 -0.16 -8.41 16 8 H 0.08 2.15 8.06 -52.48 -0.42 1.73 16 9 N -0.60 -13.35 2.82 -145.21 -0.41 -13.76 16 10 C 0.12 2.38 3.64 -62.23 -0.23 2.15 16 11 H 0.09 2.05 3.40 -51.93 -0.18 1.87 16 12 C -0.14 -2.43 6.27 -23.67 -0.15 -2.58 16 13 C -0.13 -2.05 6.46 -24.23 -0.16 -2.21 16 14 C 0.13 2.32 5.01 -62.80 -0.31 2.01 16 15 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 16 C 0.13 2.24 2.84 -65.10 -0.18 2.05 16 17 H 0.09 1.49 7.26 -51.93 -0.38 1.11 16 18 N -0.70 -11.50 5.09 -52.38 -0.27 -11.77 16 19 C 0.59 9.67 7.79 -12.85 -0.10 9.57 16 20 O -0.54 -10.01 16.51 5.20 0.09 -9.92 16 21 C -0.28 -3.95 6.48 -37.10 -0.24 -4.19 16 22 C 0.11 1.40 11.09 -18.85 -0.21 1.20 16 23 N -0.48 -5.93 10.51 -15.38 -0.16 -6.09 16 24 C 0.02 0.21 12.22 51.75 0.63 0.84 16 25 S 0.19 2.09 22.35 -107.50 -2.40 -0.31 16 26 C -0.14 -2.45 6.27 -23.90 -0.15 -2.60 16 27 H 0.26 7.72 8.73 -40.82 -0.36 7.36 16 28 H 0.06 0.87 7.88 -51.93 -0.41 0.46 16 29 H 0.07 1.24 6.49 -51.93 -0.34 0.91 16 30 H 0.06 0.80 7.85 -51.93 -0.41 0.39 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.40 6.65 7.84 -40.82 -0.32 6.33 16 33 H 0.19 2.24 8.06 -52.49 -0.42 1.82 16 34 H 0.20 1.23 8.06 -52.49 -0.42 0.80 16 35 H 0.07 1.06 7.88 -51.93 -0.41 0.65 16 36 H 0.07 1.27 8.00 -51.93 -0.42 0.86 16 LS Contribution 304.78 15.07 4.59 4.59 Total: -1.00 -31.41 304.78 -7.68 -39.09 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -4.27 Total: 6.79 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -1.36 Total: -2.82 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.08 Total: -58.58 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -4.25 Total: 21.15 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.40 Total: -0.31 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.41 -7.68 -39.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096854330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.747 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds