Wall clock time and date at job start Tue Mar 31 2020 06:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00263 * 2 1 4 4 H 1.48500 * 109.47244 * 89.99682 * 3 2 1 5 5 H 1.48502 * 109.47169 * 329.99765 * 3 2 1 6 6 H 1.48500 * 109.47269 * 209.99924 * 3 2 1 7 7 C 1.38808 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00162 * 21.19797 * 7 2 1 9 9 N 1.36936 * 120.00008 * 201.20053 * 7 2 1 10 10 C 1.50239 * 130.84022 * 9.78414 * 9 7 2 11 11 H 1.09003 * 115.85699 * 359.67243 * 10 9 7 12 12 C 1.56860 * 100.58308 * 234.63150 * 10 9 7 13 13 C 1.54853 * 103.35407 * 326.64942 * 12 10 9 14 14 C 1.50243 * 130.83808 * 190.11326 * 9 7 2 15 15 H 1.08998 * 115.85890 * 359.61191 * 14 9 7 16 16 C 1.55841 * 101.05039 * 233.93360 * 14 9 7 17 17 H 1.09001 * 110.62526 * 208.57318 * 16 14 9 18 18 N 1.46500 * 110.62653 * 85.55921 * 16 14 9 19 19 C 1.34775 * 120.00211 * 155.00103 * 18 16 14 20 20 O 1.21685 * 119.99852 * 359.97438 * 19 18 16 21 21 C 1.46681 * 120.00152 * 179.97438 * 19 18 16 22 22 C 1.35659 * 126.13122 * 179.97438 * 21 19 18 23 23 N 1.30947 * 114.19060 * 179.97438 * 22 21 19 24 24 C 1.29428 * 117.36386 * 359.97438 * 23 22 21 25 25 S 1.70952 * 110.38944 * 359.72746 * 24 23 22 26 26 C 1.55472 * 103.33084 * 326.97846 * 16 14 9 27 27 H 0.96994 * 119.99799 * 174.94013 * 1 2 3 28 28 H 1.09001 * 110.43113 * 208.30842 * 12 10 9 29 29 H 1.08998 * 110.90696 * 85.22493 * 12 10 9 30 30 H 1.08996 * 110.62628 * 241.78625 * 13 12 10 31 31 H 1.08995 * 110.62388 * 118.76957 * 13 12 10 32 32 H 0.96998 * 119.99827 * 334.98957 * 18 16 14 33 33 H 1.07999 * 122.90338 * 359.96520 * 22 21 19 34 34 H 1.07996 * 124.80473 * 180.02562 * 24 23 22 35 35 H 1.09001 * 110.61076 * 241.58938 * 26 16 14 36 36 H 1.08999 * 110.89697 * 118.54610 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 1.4001 5 1 1.4478 2.6526 -0.7001 6 1 3.5479 1.4400 -0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.5250 -2.1060 -0.3373 9 7 3.3101 -1.2422 0.4294 10 6 4.1494 -0.2045 1.1193 11 1 3.6597 0.7493 1.3158 12 6 5.3810 -0.1393 0.1500 13 6 5.5069 -1.5936 -0.3668 14 6 4.3379 -2.3350 0.3492 15 1 4.0105 -3.2620 -0.1216 16 6 4.7648 -2.4540 1.8433 17 1 5.7952 -2.8006 1.9218 18 7 3.8608 -3.3501 2.5685 19 6 4.2894 -3.9883 3.6755 20 8 5.4274 -3.8204 4.0724 21 6 3.3841 -4.8851 4.4019 22 6 3.6834 -5.5868 5.5237 23 7 2.6965 -6.3172 5.9790 24 6 1.5808 -6.2847 5.3238 25 16 1.7100 -5.2369 3.9792 26 6 4.6358 -0.9969 2.3700 27 1 -0.4849 -0.8367 -0.0741 28 1 6.2787 0.1537 0.6946 29 1 5.1905 0.5465 -0.6755 30 1 6.4669 -2.0217 -0.0786 31 1 5.3787 -1.6290 -1.4486 32 1 2.9537 -3.4841 2.2520 33 1 4.6519 -5.5467 5.9999 34 1 0.6924 -6.8374 5.5915 35 1 5.6027 -0.6242 2.7084 36 1 3.9004 -0.9371 3.1722 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096854330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:31 Heat of formation + Delta-G solvation = 43.044898 kcal Electronic energy + Delta-G solvation = -21476.088330 eV Core-core repulsion = 18280.866891 eV Total energy + Delta-G solvation = -3195.221439 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58052 -40.81577 -39.68479 -35.49410 -34.66527 -32.00581 -31.31534 -30.62124 -29.72238 -27.05733 -25.51192 -23.88383 -22.13916 -21.88076 -21.22118 -20.57217 -19.82149 -19.33328 -18.01044 -17.52056 -17.22826 -16.46032 -16.06277 -15.71459 -15.28522 -15.20155 -15.03204 -15.00871 -14.89760 -14.39668 -13.44733 -13.28443 -13.16762 -12.92170 -12.65251 -12.55605 -12.30912 -11.99270 -11.59532 -11.39730 -11.32156 -11.21463 -11.05059 -10.78546 -10.72960 -10.68547 -10.20340 -10.06250 -9.21437 -8.52927 -5.33408 -0.82986 0.13040 0.54135 1.35609 1.39711 1.53984 1.70949 2.01462 2.07834 2.57260 2.98995 3.22918 3.26229 3.67978 3.80361 3.83235 4.03758 4.11418 4.22786 4.28964 4.34474 4.41570 4.54536 4.57350 4.73689 4.79294 4.96220 5.04524 5.09577 5.16345 5.30831 5.39987 5.52852 5.58280 6.09809 6.32871 6.48964 6.81064 6.97397 7.44799 8.29411 8.97865 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019524 B = 0.005313 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.780670 B = 5268.658602 C = 6193.872396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.081 4.081 3 Si 1.093 2.907 4 H -0.288 1.288 5 H -0.318 1.318 6 H -0.243 1.243 7 C -0.284 4.284 8 H 0.053 0.947 9 N -0.626 5.626 10 C 0.102 3.898 11 H 0.077 0.923 12 C -0.134 4.134 13 C -0.119 4.119 14 C 0.127 3.873 15 H 0.096 0.904 16 C 0.139 3.861 17 H 0.105 0.895 18 N -0.702 5.702 19 C 0.594 3.406 20 O -0.563 6.563 21 C -0.317 4.317 22 C 0.116 3.884 23 N -0.499 5.499 24 C 0.048 3.952 25 S 0.192 5.808 26 C -0.130 4.130 27 H 0.248 0.752 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.401 0.599 33 H 0.191 0.809 34 H 0.247 0.753 35 H 0.092 0.908 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.369 -10.239 6.607 14.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.274 4.274 3 Si 0.923 3.077 4 H -0.217 1.217 5 H -0.248 1.248 6 H -0.167 1.167 7 C -0.412 4.412 8 H 0.071 0.929 9 N -0.351 5.351 10 C -0.003 4.003 11 H 0.095 0.905 12 C -0.173 4.173 13 C -0.158 4.158 14 C 0.020 3.980 15 H 0.114 0.886 16 C 0.033 3.967 17 H 0.123 0.877 18 N -0.350 5.350 19 C 0.381 3.619 20 O -0.444 6.444 21 C -0.441 4.441 22 C -0.043 4.043 23 N -0.213 5.213 24 C -0.246 4.246 25 S 0.447 5.553 26 C -0.170 4.170 27 H 0.057 0.943 28 H 0.111 0.889 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.236 0.764 33 H 0.208 0.792 34 H 0.263 0.737 35 H 0.110 0.890 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.082 -8.554 6.515 13.451 hybrid contribution -0.273 -1.604 0.106 1.630 sum 7.808 -10.157 6.621 14.421 Atomic orbital electron populations 1.71036 1.06965 1.28939 1.54417 1.26755 0.96353 1.03937 1.00337 0.83515 0.75131 0.72636 0.76421 1.21658 1.24817 1.16696 1.19905 0.86281 0.94927 1.40124 0.92883 1.46976 1.08203 1.12870 1.67026 1.23631 0.91276 0.92549 0.92846 0.90530 1.23330 0.97642 0.97460 0.98895 1.22841 0.98022 0.95091 0.99854 1.23361 0.89293 0.92622 0.92682 0.88645 1.22661 0.93540 0.88423 0.92114 0.87731 1.45944 1.16874 1.45449 1.26779 1.16952 0.85938 0.78972 0.80061 1.90774 1.19748 1.65914 1.67999 1.25749 1.00235 1.11977 1.06155 1.22372 0.99646 0.90758 0.91502 1.66352 1.00389 1.22661 1.31882 1.29566 1.00966 0.99874 0.94175 1.84429 1.04453 1.38293 1.28122 1.23366 1.01102 0.95503 0.97048 0.94291 0.88949 0.92280 0.88914 0.91786 0.76364 0.79224 0.73746 0.88984 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.31 13.70 21.65 0.30 -60.02 16 2 C -0.08 -4.59 5.49 84.86 0.47 -4.12 16 3 Si 1.09 51.82 25.00 68.60 1.72 53.53 16 4 H -0.29 -13.07 6.60 99.48 0.66 -12.41 16 5 H -0.32 -15.85 7.11 99.48 0.71 -15.14 16 6 H -0.24 -10.06 4.91 99.48 0.49 -9.57 16 7 C -0.28 -15.12 10.81 84.03 0.91 -14.22 16 8 H 0.05 3.03 8.06 -2.91 -0.02 3.00 16 9 N -0.63 -27.07 2.82 -613.31 -1.73 -28.80 16 10 C 0.10 3.92 3.64 46.60 0.17 4.08 16 11 H 0.08 3.22 3.40 -2.39 -0.01 3.21 16 12 C -0.13 -4.13 6.27 32.58 0.20 -3.93 16 13 C -0.12 -3.37 6.46 32.21 0.21 -3.17 16 14 C 0.13 4.31 5.01 46.23 0.23 4.54 16 15 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 16 C 0.14 4.41 2.84 46.82 0.13 4.54 16 17 H 0.10 3.09 7.26 -2.39 -0.02 3.08 16 18 N -0.70 -22.47 5.09 -437.85 -2.23 -24.70 16 19 C 0.59 18.96 7.79 86.45 0.67 19.63 16 20 O -0.56 -20.43 16.51 -4.30 -0.07 -20.50 16 21 C -0.32 -8.53 6.48 23.88 0.15 -8.38 16 22 C 0.12 2.89 11.09 84.23 0.93 3.83 16 23 N -0.50 -11.34 10.51 -202.57 -2.13 -13.47 16 24 C 0.05 0.82 12.22 130.60 1.60 2.42 16 25 S 0.19 4.08 22.35 -56.49 -1.26 2.81 16 26 C -0.13 -4.40 6.27 32.43 0.20 -4.20 16 27 H 0.25 15.39 8.73 -92.71 -0.81 14.58 16 28 H 0.09 2.25 7.88 -2.39 -0.02 2.23 16 29 H 0.06 1.93 6.49 -2.39 -0.02 1.92 16 30 H 0.09 2.06 7.85 -2.39 -0.02 2.04 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.40 13.14 7.84 -92.71 -0.73 12.41 16 33 H 0.19 4.42 8.06 -2.91 -0.02 4.40 16 34 H 0.25 1.91 8.06 -2.91 -0.02 1.89 16 35 H 0.09 2.63 7.88 -2.39 -0.02 2.62 16 36 H 0.04 1.71 8.00 -2.39 -0.02 1.69 16 Total: -1.00 -69.76 304.78 0.56 -69.20 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.09 Total: 20.92 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.88 Total: 1.02 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -5.79 Total: -126.98 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.07 Total: -20.50 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 1.72 Total: 53.53 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -1.26 Total: 2.81 kcal Total: -69.76 0.56 -69.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096854330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.243 kcal (2) G-P(sol) polarization free energy of solvation -69.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds