Wall clock time and date at job start Tue Mar 31 2020 06:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86796 * 120.00351 * 2 1 4 4 H 1.48496 * 109.47231 * 270.00422 * 3 2 1 5 5 H 1.48505 * 109.47039 * 30.00283 * 3 2 1 6 6 H 1.48497 * 109.47663 * 150.00087 * 3 2 1 7 7 C 1.38817 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07988 * 120.00303 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99435 * 0.02562 * 7 2 1 10 10 C 1.50244 * 130.84275 * 0.02562 * 9 7 2 11 11 H 1.09000 * 115.85747 * 0.34269 * 10 9 7 12 12 C 1.55841 * 101.05052 * 233.95163 * 10 9 7 13 13 C 1.56689 * 103.60331 * 326.82974 * 12 10 9 14 14 C 1.50247 * 130.83651 * 179.97438 * 9 7 2 15 15 H 1.08998 * 115.85603 * 359.66118 * 14 9 7 16 16 C 1.55841 * 101.04904 * 233.98686 * 14 9 7 17 17 H 1.09004 * 110.62681 * 208.57617 * 16 14 9 18 18 N 1.46499 * 110.63177 * 85.54954 * 16 14 9 19 19 C 1.34770 * 120.00164 * 159.51692 * 18 16 14 20 20 O 1.21634 * 120.00329 * 0.02562 * 19 18 16 21 21 C 1.47276 * 119.99788 * 180.02562 * 19 18 16 22 22 C 1.35205 * 123.13888 * 180.02562 * 21 19 18 23 23 S 1.70940 * 108.82584 * 179.97438 * 22 21 19 24 24 C 1.70770 * 91.12782 * 0.02562 * 23 22 21 25 25 N 1.28645 * 110.56116 * 359.76231 * 24 23 22 26 26 C 1.54857 * 103.44584 * 327.06069 * 16 14 9 27 27 H 0.96999 * 120.00047 * 359.97438 * 1 2 3 28 28 H 1.08994 * 110.62715 * 85.55537 * 12 10 9 29 29 H 1.09003 * 110.62675 * 208.41285 * 12 10 9 30 30 H 1.08998 * 111.43924 * 241.94405 * 13 12 10 31 31 H 1.08998 * 110.61525 * 118.35437 * 13 12 10 32 32 H 0.97007 * 119.99633 * 339.52363 * 18 16 14 33 33 H 1.07999 * 125.58853 * 359.95912 * 22 21 19 34 34 H 1.07999 * 124.71827 * 180.02562 * 24 23 22 35 35 H 1.08997 * 110.62590 * 118.49204 * 26 16 14 36 36 H 1.09004 * 110.62522 * 241.51235 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1502 -2.6706 -0.0029 11 1 -0.8015 -1.7966 -0.0088 12 6 -0.2752 -3.6113 1.2333 13 6 1.0779 -4.4012 1.2336 14 6 1.8186 -3.8073 -0.0029 15 1 2.9011 -3.9344 -0.0088 16 6 1.0671 -4.3834 -1.2406 17 1 0.8930 -5.4528 -1.1206 18 7 1.8170 -4.1160 -2.4703 19 6 1.5866 -4.8541 -3.5742 20 8 0.7557 -5.7421 -3.5496 21 6 2.3409 -4.5855 -4.8102 22 6 2.1609 -5.2856 -5.9528 23 16 3.2173 -4.6714 -7.1483 24 6 3.8385 -3.5167 -6.0541 25 7 3.2635 -3.6248 -4.9084 26 6 -0.2740 -3.6091 -1.2402 27 1 -0.4850 0.8400 0.0004 28 1 -0.3833 -3.0299 2.1488 29 1 -1.1159 -4.2946 1.1123 30 1 0.9146 -5.4713 1.1056 31 1 1.6374 -4.2038 2.1480 32 1 2.4795 -3.4076 -2.4901 33 1 1.4641 -6.0995 -6.0881 34 1 4.6043 -2.7934 -6.2923 35 1 -0.3810 -3.0261 -2.1549 36 1 -1.1130 -4.2945 -1.1200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096880152.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:20 Heat of formation + Delta-G solvation = 56.959251 kcal Electronic energy + Delta-G solvation = -21468.815180 eV Core-core repulsion = 18274.197113 eV Total energy + Delta-G solvation = -3194.618068 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.38415 -39.21688 -37.84030 -33.75011 -32.46899 -30.70300 -29.05661 -28.83595 -27.92778 -25.67756 -24.16814 -22.85133 -20.90220 -19.78835 -19.47005 -18.84288 -18.48052 -16.98085 -16.48921 -15.87136 -15.28465 -15.10353 -14.75164 -14.04512 -13.97654 -13.59800 -13.47813 -13.33663 -12.86049 -12.07079 -11.99560 -11.80722 -11.21689 -11.09031 -10.90792 -10.87213 -10.49725 -10.32650 -10.07826 -9.99747 -9.92694 -9.84065 -9.81997 -9.26301 -9.15296 -9.13098 -8.93751 -8.40176 -6.92156 -5.71609 -3.10337 0.46160 1.14802 1.49452 2.06254 3.38900 3.43737 3.45532 3.57024 3.65942 4.15822 4.43720 4.96585 5.14476 5.15349 5.26469 5.39063 5.67431 5.70695 5.81774 5.89083 6.06737 6.13310 6.18709 6.32046 6.44625 6.51331 6.62400 6.75983 6.84995 6.96871 7.11473 7.31396 7.38980 7.50729 7.81729 8.05427 8.19788 8.59034 9.10289 9.73529 10.54235 11.37685 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.005207 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.818017 B = 5376.568919 C = 6693.179861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.915 3.085 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.212 4.212 8 H 0.078 0.922 9 N -0.589 5.589 10 C 0.153 3.847 11 H 0.154 0.846 12 C -0.137 4.137 13 C -0.129 4.129 14 C 0.126 3.874 15 H 0.087 0.913 16 C 0.127 3.873 17 H 0.079 0.921 18 N -0.683 5.683 19 C 0.586 3.414 20 O -0.549 6.549 21 C 0.014 3.986 22 C -0.225 4.225 23 S 0.190 5.810 24 C 0.001 3.999 25 N -0.435 5.435 26 C -0.143 4.143 27 H 0.254 0.746 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.412 0.588 33 H 0.188 0.812 34 H 0.204 0.796 35 H 0.059 0.941 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.731 -9.386 -11.085 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.340 4.340 8 H 0.096 0.904 9 N -0.310 5.310 10 C 0.047 3.953 11 H 0.171 0.829 12 C -0.176 4.176 13 C -0.169 4.169 14 C 0.017 3.983 15 H 0.105 0.895 16 C 0.020 3.980 17 H 0.097 0.903 18 N -0.331 5.331 19 C 0.368 3.632 20 O -0.428 6.428 21 C -0.121 4.121 22 C -0.367 4.367 23 S 0.444 5.556 24 C -0.299 4.299 25 N -0.149 5.149 26 C -0.183 4.183 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.248 0.752 33 H 0.206 0.794 34 H 0.221 0.779 35 H 0.077 0.923 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.542 -9.489 -11.585 15.967 hybrid contribution 0.337 1.045 0.706 1.306 sum 5.879 -8.443 -10.879 14.973 Atomic orbital electron populations 1.69454 1.05013 1.24933 1.57447 1.24687 0.95584 0.97469 1.02840 0.86059 0.78490 0.83359 0.77491 1.21740 1.21733 1.20787 1.19008 0.90228 0.81878 1.42884 0.90375 1.46518 1.01628 0.98559 1.84292 1.23763 0.87444 0.95299 0.88834 0.82948 1.23356 0.95052 0.98049 1.01143 1.23197 0.97767 0.97501 0.98450 1.23139 0.96062 0.86996 0.92081 0.89498 1.22728 0.93055 0.98525 0.83648 0.90302 1.45879 1.41171 1.35556 1.10525 1.17072 0.81942 0.82106 0.82073 1.90772 1.34921 1.33015 1.84049 1.20724 0.99126 0.95635 0.96609 1.26592 1.06426 1.07010 0.96705 1.82810 1.29607 1.27166 1.15985 1.28499 1.05178 1.04230 0.91980 1.66992 1.07289 1.17649 1.22973 1.23464 0.94829 0.98376 1.01620 0.93584 0.92585 0.93346 0.92776 0.92357 0.75191 0.79431 0.77894 0.92272 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.22 10.46 55.49 0.58 -25.64 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 3 Si 0.92 21.83 29.55 -169.99 -5.02 16.80 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.21 -5.67 10.59 -15.06 -0.16 -5.83 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.59 -14.32 2.99 -145.81 -0.44 -14.76 16 10 C 0.15 3.57 4.72 -62.83 -0.30 3.27 16 11 H 0.15 4.06 5.52 -51.93 -0.29 3.77 16 12 C -0.14 -2.74 6.49 -23.22 -0.15 -2.89 16 13 C -0.13 -2.38 6.58 -23.20 -0.15 -2.53 16 14 C 0.13 2.54 4.99 -62.77 -0.31 2.22 16 15 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 16 C 0.13 2.49 2.72 -65.44 -0.18 2.31 16 17 H 0.08 1.52 7.35 -51.93 -0.38 1.14 16 18 N -0.68 -13.10 5.09 -52.51 -0.27 -13.37 16 19 C 0.59 10.96 7.79 -12.59 -0.10 10.87 16 20 O -0.55 -11.33 16.44 5.25 0.09 -11.25 16 21 C 0.01 0.22 6.70 -84.52 -0.57 -0.35 16 22 C -0.23 -2.80 10.62 29.65 0.31 -2.49 16 23 S 0.19 1.64 22.97 -107.50 -2.47 -0.83 16 24 C 0.00 0.01 12.17 51.43 0.63 0.64 16 25 N -0.43 -6.45 10.12 -12.36 -0.13 -6.57 16 26 C -0.14 -3.04 6.22 -24.26 -0.15 -3.19 16 27 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 0.87 7.82 -51.93 -0.41 0.46 16 30 H 0.05 0.87 7.81 -51.93 -0.41 0.47 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.41 8.07 8.14 -40.82 -0.33 7.74 16 33 H 0.19 2.13 8.03 -52.49 -0.42 1.71 16 34 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.06 1.38 7.98 -51.93 -0.41 0.97 16 36 H 0.05 1.08 7.82 -51.93 -0.41 0.67 16 LS Contribution 313.12 15.07 4.72 4.72 Total: -1.00 -31.29 313.12 -8.45 -39.74 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -4.29 Total: 9.49 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -1.22 Total: 1.66 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -0.25 Total: -60.34 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.47 Total: -0.83 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.29 -8.45 -39.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096880152.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.700 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds