Wall clock time and date at job start Tue Mar 31 2020 06:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86796 * 120.00351 * 2 1 4 4 H 1.48496 * 109.47231 * 270.00422 * 3 2 1 5 5 H 1.48505 * 109.47039 * 30.00283 * 3 2 1 6 6 H 1.48497 * 109.47663 * 150.00087 * 3 2 1 7 7 C 1.38817 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07988 * 120.00303 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99435 * 0.02562 * 7 2 1 10 10 C 1.50244 * 130.84275 * 0.02562 * 9 7 2 11 11 H 1.09000 * 115.85747 * 0.34269 * 10 9 7 12 12 C 1.55841 * 101.05052 * 233.95163 * 10 9 7 13 13 C 1.56689 * 103.60331 * 326.82974 * 12 10 9 14 14 C 1.50247 * 130.83651 * 179.97438 * 9 7 2 15 15 H 1.08998 * 115.85603 * 359.66118 * 14 9 7 16 16 C 1.55841 * 101.04904 * 233.98686 * 14 9 7 17 17 H 1.09004 * 110.62681 * 208.57617 * 16 14 9 18 18 N 1.46499 * 110.63177 * 85.54954 * 16 14 9 19 19 C 1.34770 * 120.00164 * 159.51692 * 18 16 14 20 20 O 1.21634 * 120.00329 * 0.02562 * 19 18 16 21 21 C 1.47276 * 119.99788 * 180.02562 * 19 18 16 22 22 C 1.35205 * 123.13888 * 180.02562 * 21 19 18 23 23 S 1.70940 * 108.82584 * 179.97438 * 22 21 19 24 24 C 1.70770 * 91.12782 * 0.02562 * 23 22 21 25 25 N 1.28645 * 110.56116 * 359.76231 * 24 23 22 26 26 C 1.54857 * 103.44584 * 327.06069 * 16 14 9 27 27 H 0.96999 * 120.00047 * 359.97438 * 1 2 3 28 28 H 1.08994 * 110.62715 * 85.55537 * 12 10 9 29 29 H 1.09003 * 110.62675 * 208.41285 * 12 10 9 30 30 H 1.08998 * 111.43924 * 241.94405 * 13 12 10 31 31 H 1.08998 * 110.61525 * 118.35437 * 13 12 10 32 32 H 0.97007 * 119.99633 * 339.52363 * 18 16 14 33 33 H 1.07999 * 125.58853 * 359.95912 * 22 21 19 34 34 H 1.07999 * 124.71827 * 180.02562 * 24 23 22 35 35 H 1.08997 * 110.62590 * 118.49204 * 26 16 14 36 36 H 1.09004 * 110.62522 * 241.51235 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1502 -2.6706 -0.0029 11 1 -0.8015 -1.7966 -0.0088 12 6 -0.2752 -3.6113 1.2333 13 6 1.0779 -4.4012 1.2336 14 6 1.8186 -3.8073 -0.0029 15 1 2.9011 -3.9344 -0.0088 16 6 1.0671 -4.3834 -1.2406 17 1 0.8930 -5.4528 -1.1206 18 7 1.8170 -4.1160 -2.4703 19 6 1.5866 -4.8541 -3.5742 20 8 0.7557 -5.7421 -3.5496 21 6 2.3409 -4.5855 -4.8102 22 6 2.1609 -5.2856 -5.9528 23 16 3.2173 -4.6714 -7.1483 24 6 3.8385 -3.5167 -6.0541 25 7 3.2635 -3.6248 -4.9084 26 6 -0.2740 -3.6091 -1.2402 27 1 -0.4850 0.8400 0.0004 28 1 -0.3833 -3.0299 2.1488 29 1 -1.1159 -4.2946 1.1123 30 1 0.9146 -5.4713 1.1056 31 1 1.6374 -4.2038 2.1480 32 1 2.4795 -3.4076 -2.4901 33 1 1.4641 -6.0995 -6.0881 34 1 4.6043 -2.7934 -6.2923 35 1 -0.3810 -3.0261 -2.1549 36 1 -1.1130 -4.2945 -1.1200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096880152.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:20 Heat of formation + Delta-G solvation = 35.477384 kcal Electronic energy + Delta-G solvation = -21469.746704 eV Core-core repulsion = 18274.197113 eV Total energy + Delta-G solvation = -3195.549591 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.63616 -40.65976 -39.24652 -35.33867 -34.38994 -31.71414 -30.95572 -30.43281 -29.51254 -26.78578 -26.05708 -24.09298 -22.37199 -21.54017 -20.74401 -20.28694 -19.74877 -18.86287 -17.70007 -17.16096 -16.80163 -16.46321 -16.31263 -15.77329 -15.39617 -15.01341 -14.81070 -14.49090 -14.27872 -13.73372 -13.67712 -12.95772 -12.93941 -12.88694 -12.76432 -12.68633 -12.11291 -11.97074 -11.90952 -11.70805 -11.40998 -11.04038 -10.95104 -10.84296 -10.74931 -10.73272 -10.14554 -9.82573 -8.87726 -7.76205 -5.15882 -0.46108 0.34566 0.63351 0.97025 1.47847 1.48845 1.56902 2.26336 2.35707 2.50253 3.17302 3.36964 3.44039 3.94083 4.01473 4.05032 4.16062 4.25072 4.36606 4.43501 4.46515 4.62577 4.66008 4.82056 4.85743 4.90898 5.05394 5.14787 5.17912 5.36878 5.50182 5.56874 5.68613 5.88873 6.26392 6.35890 6.66333 7.05763 7.14838 7.72097 8.57885 9.31356 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.005207 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.818017 B = 5376.568919 C = 6693.179861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.975 3.025 4 H -0.292 1.292 5 H -0.298 1.298 6 H -0.270 1.270 7 C -0.214 4.214 8 H 0.083 0.917 9 N -0.610 5.610 10 C 0.139 3.861 11 H 0.116 0.884 12 C -0.129 4.129 13 C -0.118 4.118 14 C 0.126 3.874 15 H 0.098 0.902 16 C 0.136 3.864 17 H 0.090 0.910 18 N -0.688 5.688 19 C 0.582 3.418 20 O -0.577 6.577 21 C -0.023 4.023 22 C -0.237 4.237 23 S 0.305 5.695 24 C -0.010 4.010 25 N -0.478 5.478 26 C -0.132 4.132 27 H 0.245 0.755 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.408 0.592 33 H 0.194 0.806 34 H 0.237 0.763 35 H 0.027 0.973 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.465 -10.700 -12.597 18.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.804 3.196 4 H -0.220 1.220 5 H -0.225 1.225 6 H -0.195 1.195 7 C -0.343 4.343 8 H 0.100 0.900 9 N -0.331 5.331 10 C 0.033 3.967 11 H 0.134 0.866 12 C -0.168 4.168 13 C -0.158 4.158 14 C 0.019 3.981 15 H 0.116 0.884 16 C 0.030 3.970 17 H 0.108 0.892 18 N -0.336 5.336 19 C 0.367 3.633 20 O -0.458 6.458 21 C -0.158 4.158 22 C -0.380 4.380 23 S 0.561 5.439 24 C -0.308 4.308 25 N -0.193 5.193 26 C -0.173 4.173 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.244 0.756 33 H 0.211 0.789 34 H 0.253 0.747 35 H 0.046 0.954 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.309 -10.834 -13.115 18.515 hybrid contribution -0.162 1.389 0.988 1.712 sum 7.147 -9.445 -12.127 16.951 Atomic orbital electron populations 1.69712 1.06208 1.24783 1.59160 1.25429 0.96354 1.00373 1.03829 0.85113 0.77669 0.79693 0.77076 1.21958 1.22487 1.19498 1.19342 0.90695 0.83080 1.41207 0.89952 1.46704 1.02293 0.99593 1.84521 1.23603 0.86725 0.95160 0.91261 0.86630 1.23239 0.97199 0.97782 0.98606 1.23153 0.96134 0.98918 0.97546 1.23346 0.96957 0.84797 0.93037 0.88413 1.22587 0.91941 0.98568 0.83923 0.89176 1.45876 1.41123 1.35746 1.10810 1.17549 0.81651 0.81271 0.82842 1.90728 1.36227 1.34091 1.84733 1.20379 1.01085 0.98099 0.96286 1.26923 1.07017 1.06614 0.97454 1.82424 1.25760 1.23732 1.12004 1.29112 1.05020 1.05080 0.91609 1.66958 1.08349 1.18499 1.25520 1.23325 0.96694 0.98045 0.99217 0.94498 0.94085 0.90906 0.89535 0.91920 0.75605 0.78929 0.74679 0.95406 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.16 10.46 21.65 0.23 -55.94 16 2 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.97 45.73 29.55 68.60 2.03 47.76 16 4 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.21 -11.63 10.59 84.03 0.89 -10.74 16 8 H 0.08 4.27 7.83 -2.92 -0.02 4.25 16 9 N -0.61 -29.97 2.99 -615.24 -1.84 -31.81 16 10 C 0.14 6.62 4.72 46.21 0.22 6.84 16 11 H 0.12 6.47 5.52 -2.39 -0.01 6.46 16 12 C -0.13 -5.08 6.49 32.87 0.21 -4.87 16 13 C -0.12 -4.09 6.58 32.88 0.22 -3.88 16 14 C 0.13 4.96 4.99 46.24 0.23 5.19 16 15 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 16 C 0.14 5.30 2.72 46.61 0.13 5.42 16 17 H 0.09 3.33 7.35 -2.39 -0.02 3.31 16 18 N -0.69 -26.72 5.09 -438.30 -2.23 -28.95 16 19 C 0.58 22.05 7.79 86.62 0.68 22.73 16 20 O -0.58 -24.00 16.44 -4.14 -0.07 -24.06 16 21 C -0.02 -0.73 6.70 40.56 0.27 -0.46 16 22 C -0.24 -5.51 10.62 67.12 0.71 -4.80 16 23 S 0.31 4.16 22.97 -56.49 -1.30 2.86 16 24 C -0.01 -0.18 12.17 130.71 1.59 1.42 16 25 N -0.48 -13.79 10.12 -193.02 -1.95 -15.74 16 26 C -0.13 -5.73 6.22 32.19 0.20 -5.53 16 27 H 0.25 14.27 8.31 -92.71 -0.77 13.49 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 2.48 7.82 -2.39 -0.02 2.46 16 30 H 0.09 2.48 7.81 -2.39 -0.02 2.46 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.41 16.36 8.14 -92.70 -0.75 15.61 16 33 H 0.19 4.12 8.03 -2.91 -0.02 4.10 16 34 H 0.24 2.40 8.06 -2.91 -0.02 2.38 16 35 H 0.03 1.34 7.98 -2.39 -0.02 1.32 16 36 H 0.07 2.76 7.82 -2.38 -0.02 2.74 16 Total: -1.00 -70.61 313.12 1.04 -69.58 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.36 Total: 28.28 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 5.81 Total: 8.01 kcal Atomic # 7 Polarization: -126.64 SS G_CDS: -5.80 Total: -132.44 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.07 Total: -24.06 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.30 Total: 2.86 kcal Total: -70.61 1.04 -69.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096880152.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.057 kcal (2) G-P(sol) polarization free energy of solvation -70.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds