Wall clock time and date at job start Tue Mar 31 2020 06:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48504 * 109.46962 * 89.99581 * 3 2 1 5 5 H 1.48504 * 109.46990 * 329.99775 * 3 2 1 6 6 H 1.48500 * 109.47287 * 209.99847 * 3 2 1 7 7 C 1.38810 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99934 * 20.97550 * 7 2 1 9 9 N 1.36936 * 120.00256 * 200.96992 * 7 2 1 10 10 C 1.50235 * 130.83434 * 10.02788 * 9 7 2 11 11 H 1.09001 * 115.85873 * 0.39466 * 10 9 7 12 12 C 1.55844 * 101.05157 * 234.00267 * 10 9 7 13 13 C 1.54226 * 103.56206 * 327.15101 * 12 10 9 14 14 C 1.50230 * 130.83719 * 190.36612 * 9 7 2 15 15 H 1.08998 * 115.86484 * 359.60955 * 14 9 7 16 16 C 1.55848 * 101.04899 * 233.93276 * 14 9 7 17 17 H 1.09004 * 110.62609 * 208.57177 * 16 14 9 18 18 N 1.46501 * 110.62770 * 85.71189 * 16 14 9 19 19 C 1.34776 * 119.99778 * 155.00016 * 18 16 14 20 20 O 1.21568 * 120.00522 * 359.97438 * 19 18 16 21 21 C 1.47694 * 119.99708 * 180.02562 * 19 18 16 22 22 C 1.39488 * 122.10243 * 180.02562 * 21 19 18 23 23 C 1.34998 * 111.68122 * 179.97438 * 22 21 19 24 24 S 1.71762 * 105.45533 * 359.97438 * 23 22 21 25 25 N 1.30605 * 122.10121 * 359.70794 * 21 19 18 26 26 C 1.54849 * 103.44542 * 327.06281 * 16 14 9 27 27 H 0.97000 * 119.99970 * 174.92758 * 1 2 3 28 28 H 1.08993 * 110.62534 * 85.55411 * 12 10 9 29 29 H 1.08995 * 110.62888 * 208.42179 * 12 10 9 30 30 H 1.08999 * 110.64800 * 241.43268 * 13 12 10 31 31 H 1.09001 * 110.49745 * 118.49405 * 13 12 10 32 32 H 0.97000 * 120.00093 * 335.00331 * 18 16 14 33 33 H 1.07993 * 124.15874 * 0.03064 * 22 21 19 34 34 H 1.08005 * 127.27574 * 179.97438 * 23 22 21 35 35 H 1.09001 * 110.62531 * 118.48963 * 26 16 14 36 36 H 1.08999 * 110.62811 * 241.50968 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 1.4001 5 1 1.4476 2.6526 -0.7001 6 1 3.5478 1.4402 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.5240 -2.1066 -0.3339 9 7 3.3116 -1.2412 0.4250 10 6 4.1518 -0.2038 1.1141 11 1 3.6577 0.7446 1.3252 12 6 5.3850 -0.1385 0.1635 13 6 5.5132 -1.5826 -0.3624 14 6 4.3406 -2.3324 0.3389 15 1 4.0130 -3.2588 -0.1328 16 6 4.7727 -2.4540 1.8313 17 1 5.8039 -2.7994 1.9056 18 7 3.8745 -3.3558 2.5568 19 6 4.3093 -3.9954 3.6606 20 8 5.4468 -3.8245 4.0540 21 6 3.4040 -4.9051 4.3916 22 6 3.8077 -5.5886 5.5386 23 6 2.8164 -6.3590 6.0349 24 16 1.4812 -6.1222 4.9807 25 7 2.1733 -5.1153 4.0083 26 6 4.6429 -1.0054 2.3629 27 1 -0.4850 -0.8368 -0.0743 28 1 5.1996 0.5522 -0.6590 29 1 6.2793 0.1532 0.7142 30 1 6.4718 -2.0133 -0.0733 31 1 5.3912 -1.6067 -1.4453 32 1 2.9671 -3.4926 2.2427 33 1 4.7918 -5.5104 5.9763 34 1 2.8547 -6.9908 6.9100 35 1 3.9086 -0.9558 3.1669 36 1 5.6096 -0.6323 2.7008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097304742.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:05 Heat of formation + Delta-G solvation = 62.533621 kcal Electronic energy + Delta-G solvation = -21541.733002 eV Core-core repulsion = 18347.356657 eV Total energy + Delta-G solvation = -3194.376345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.46507 -39.46805 -37.84059 -34.03366 -32.66087 -31.63096 -29.53356 -29.19120 -28.58167 -26.25379 -23.60919 -22.40980 -20.91140 -20.11465 -19.90389 -19.09376 -18.37998 -17.56881 -17.33243 -16.17671 -15.50243 -15.28972 -14.73566 -14.28661 -13.85180 -13.64576 -13.42271 -13.35434 -13.27033 -12.68601 -11.84039 -11.65878 -11.52124 -11.36225 -11.31419 -11.26752 -10.88384 -10.68235 -10.50995 -10.03323 -10.01271 -9.81801 -9.52954 -9.42065 -9.23702 -8.97458 -8.73201 -8.51522 -7.23313 -6.31258 -3.19422 0.50566 1.33485 1.71679 1.73788 3.36329 3.36620 3.43822 3.49551 3.65884 4.58449 4.60896 4.66785 4.96296 5.15955 5.19192 5.35524 5.40707 5.42412 5.64332 5.65711 5.70313 5.83243 5.87845 5.94935 6.05172 6.17255 6.24895 6.27507 6.43072 6.51530 6.63644 6.75262 6.87938 7.00868 7.38923 7.86312 8.26134 8.40948 8.97868 9.52256 10.31301 11.17746 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.005083 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.516701 B = 5506.984185 C = 6444.411378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.021 4.021 3 Si 1.059 2.941 4 H -0.296 1.296 5 H -0.302 1.302 6 H -0.275 1.275 7 C -0.311 4.311 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.118 3.882 11 H 0.095 0.905 12 C -0.139 4.139 13 C -0.127 4.127 14 C 0.130 3.870 15 H 0.094 0.906 16 C 0.129 3.871 17 H 0.089 0.911 18 N -0.685 5.685 19 C 0.586 3.414 20 O -0.542 6.542 21 C 0.051 3.949 22 C -0.134 4.134 23 C -0.289 4.289 24 S 0.463 5.537 25 N -0.511 5.511 26 C -0.138 4.138 27 H 0.261 0.739 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.414 0.586 33 H 0.171 0.829 34 H 0.185 0.815 35 H 0.064 0.936 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.734 -11.564 9.506 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.221 4.221 3 Si 0.893 3.107 4 H -0.225 1.225 5 H -0.230 1.230 6 H -0.201 1.201 7 C -0.438 4.438 8 H 0.096 0.904 9 N -0.326 5.326 10 C 0.012 3.988 11 H 0.113 0.887 12 C -0.178 4.178 13 C -0.167 4.167 14 C 0.022 3.978 15 H 0.112 0.888 16 C 0.023 3.977 17 H 0.106 0.894 18 N -0.335 5.335 19 C 0.367 3.633 20 O -0.420 6.420 21 C -0.124 4.124 22 C -0.167 4.167 23 C -0.438 4.438 24 S 0.617 5.383 25 N -0.345 5.345 26 C -0.178 4.178 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.250 0.750 33 H 0.188 0.812 34 H 0.203 0.797 35 H 0.083 0.917 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.180 -9.893 8.805 14.615 hybrid contribution 1.522 -1.435 0.538 2.159 sum 7.702 -11.328 9.343 16.581 Atomic orbital electron populations 1.70919 1.05636 1.29723 1.50466 1.25745 0.96377 1.00769 0.99245 0.83908 0.74948 0.76001 0.75809 1.22548 1.22996 1.20102 1.20052 0.84225 0.96284 1.43238 0.90422 1.46916 1.08392 1.10714 1.66565 1.23312 0.90546 0.93566 0.91416 0.88735 1.23057 0.97947 0.97049 0.99795 1.22767 0.97581 0.96133 1.00188 1.23147 0.89556 0.93403 0.91737 0.88755 1.22663 0.92949 0.88867 0.93251 0.89356 1.45896 1.17610 1.43838 1.26122 1.17252 0.85744 0.79589 0.80756 1.90758 1.18515 1.65169 1.67537 1.21329 0.90636 1.02675 0.97732 1.21404 1.02548 0.97309 0.95453 1.27199 1.01045 1.07216 1.08349 1.80557 1.16798 1.31418 1.09508 1.72359 1.12653 1.19532 1.29977 1.23425 1.00366 0.95247 0.98766 0.92836 0.91485 0.92239 0.92338 0.91807 0.74968 0.81173 0.79742 0.91680 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.79 13.70 55.49 0.76 -28.03 16 2 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 3 Si 1.06 26.21 25.01 -169.99 -4.25 21.96 16 4 H -0.30 -7.07 6.60 56.52 0.37 -6.70 16 5 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 6 H -0.27 -6.21 4.94 56.52 0.28 -5.93 16 7 C -0.31 -8.58 10.81 -15.06 -0.16 -8.74 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 9 N -0.60 -14.02 2.83 -145.55 -0.41 -14.43 16 10 C 0.12 2.49 3.61 -62.55 -0.23 2.26 16 11 H 0.10 2.14 3.45 -51.93 -0.18 1.96 16 12 C -0.14 -2.50 6.20 -24.57 -0.15 -2.65 16 13 C -0.13 -2.14 6.41 -24.57 -0.16 -2.30 16 14 C 0.13 2.48 5.06 -62.80 -0.32 2.17 16 15 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 16 C 0.13 2.33 2.80 -65.43 -0.18 2.15 16 17 H 0.09 1.53 7.22 -51.93 -0.38 1.16 16 18 N -0.69 -12.44 5.08 -52.38 -0.27 -12.71 16 19 C 0.59 10.30 7.81 -12.40 -0.10 10.21 16 20 O -0.54 -10.40 16.30 5.31 0.09 -10.31 16 21 C 0.05 0.78 6.66 -84.06 -0.56 0.22 16 22 C -0.13 -1.62 9.98 -40.27 -0.40 -2.02 16 23 C -0.29 -2.62 11.41 29.58 0.34 -2.29 16 24 S 0.46 4.72 23.20 -107.50 -2.49 2.22 16 25 N -0.51 -7.59 10.71 24.85 0.27 -7.32 16 26 C -0.14 -2.61 6.25 -23.98 -0.15 -2.76 16 27 H 0.26 8.05 8.73 -40.82 -0.36 7.69 16 28 H 0.07 1.26 6.50 -51.93 -0.34 0.92 16 29 H 0.06 0.91 7.83 -51.93 -0.41 0.50 16 30 H 0.06 0.84 7.82 -51.93 -0.41 0.43 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.41 7.93 8.12 -40.82 -0.33 7.60 16 33 H 0.17 1.88 7.99 -52.49 -0.42 1.46 16 34 H 0.19 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.06 1.33 7.98 -51.93 -0.41 0.92 16 36 H 0.06 1.09 7.83 -51.93 -0.41 0.69 16 LS Contribution 303.84 15.07 4.58 4.58 Total: -1.00 -32.50 303.84 -8.17 -40.67 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.27 Total: 7.85 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -2.17 Total: -4.47 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: 0.35 Total: -62.49 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: -4.25 Total: 21.96 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -2.49 Total: 2.22 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.50 -8.17 -40.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097304742.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.204 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds