Wall clock time and date at job start Tue Mar 31 2020 06:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48504 * 109.46962 * 89.99581 * 3 2 1 5 5 H 1.48504 * 109.46990 * 329.99775 * 3 2 1 6 6 H 1.48500 * 109.47287 * 209.99847 * 3 2 1 7 7 C 1.38810 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99934 * 20.97550 * 7 2 1 9 9 N 1.36936 * 120.00256 * 200.96992 * 7 2 1 10 10 C 1.50235 * 130.83434 * 10.02788 * 9 7 2 11 11 H 1.09001 * 115.85873 * 0.39466 * 10 9 7 12 12 C 1.55844 * 101.05157 * 234.00267 * 10 9 7 13 13 C 1.54226 * 103.56206 * 327.15101 * 12 10 9 14 14 C 1.50230 * 130.83719 * 190.36612 * 9 7 2 15 15 H 1.08998 * 115.86484 * 359.60955 * 14 9 7 16 16 C 1.55848 * 101.04899 * 233.93276 * 14 9 7 17 17 H 1.09004 * 110.62609 * 208.57177 * 16 14 9 18 18 N 1.46501 * 110.62770 * 85.71189 * 16 14 9 19 19 C 1.34776 * 119.99778 * 155.00016 * 18 16 14 20 20 O 1.21568 * 120.00522 * 359.97438 * 19 18 16 21 21 C 1.47694 * 119.99708 * 180.02562 * 19 18 16 22 22 C 1.39488 * 122.10243 * 180.02562 * 21 19 18 23 23 C 1.34998 * 111.68122 * 179.97438 * 22 21 19 24 24 S 1.71762 * 105.45533 * 359.97438 * 23 22 21 25 25 N 1.30605 * 122.10121 * 359.70794 * 21 19 18 26 26 C 1.54849 * 103.44542 * 327.06281 * 16 14 9 27 27 H 0.97000 * 119.99970 * 174.92758 * 1 2 3 28 28 H 1.08993 * 110.62534 * 85.55411 * 12 10 9 29 29 H 1.08995 * 110.62888 * 208.42179 * 12 10 9 30 30 H 1.08999 * 110.64800 * 241.43268 * 13 12 10 31 31 H 1.09001 * 110.49745 * 118.49405 * 13 12 10 32 32 H 0.97000 * 120.00093 * 335.00331 * 18 16 14 33 33 H 1.07993 * 124.15874 * 0.03064 * 22 21 19 34 34 H 1.08005 * 127.27574 * 179.97438 * 23 22 21 35 35 H 1.09001 * 110.62531 * 118.48963 * 26 16 14 36 36 H 1.08999 * 110.62811 * 241.50968 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 1.4001 5 1 1.4476 2.6526 -0.7001 6 1 3.5478 1.4402 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.5240 -2.1066 -0.3339 9 7 3.3116 -1.2412 0.4250 10 6 4.1518 -0.2038 1.1141 11 1 3.6577 0.7446 1.3252 12 6 5.3850 -0.1385 0.1635 13 6 5.5132 -1.5826 -0.3624 14 6 4.3406 -2.3324 0.3389 15 1 4.0130 -3.2588 -0.1328 16 6 4.7727 -2.4540 1.8313 17 1 5.8039 -2.7994 1.9056 18 7 3.8745 -3.3558 2.5568 19 6 4.3093 -3.9954 3.6606 20 8 5.4468 -3.8245 4.0540 21 6 3.4040 -4.9051 4.3916 22 6 3.8077 -5.5886 5.5386 23 6 2.8164 -6.3590 6.0349 24 16 1.4812 -6.1222 4.9807 25 7 2.1733 -5.1153 4.0083 26 6 4.6429 -1.0054 2.3629 27 1 -0.4850 -0.8368 -0.0743 28 1 5.1996 0.5522 -0.6590 29 1 6.2793 0.1532 0.7142 30 1 6.4718 -2.0133 -0.0733 31 1 5.3912 -1.6067 -1.4453 32 1 2.9671 -3.4926 2.2427 33 1 4.7918 -5.5104 5.9763 34 1 2.8547 -6.9908 6.9100 35 1 3.9086 -0.9558 3.1669 36 1 5.6096 -0.6323 2.7008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097304742.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:05 Heat of formation + Delta-G solvation = 38.689849 kcal Electronic energy + Delta-G solvation = -21542.766945 eV Core-core repulsion = 18347.356657 eV Total energy + Delta-G solvation = -3195.410288 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.75917 -40.81510 -39.10935 -35.51137 -34.69651 -32.57360 -31.37569 -30.69405 -30.04893 -27.40867 -25.52514 -23.60908 -22.13185 -21.88087 -21.18722 -20.56197 -19.37317 -19.30392 -18.70509 -17.77580 -17.02728 -16.52951 -16.07126 -15.65155 -15.29738 -15.21811 -14.91253 -14.84513 -14.33075 -14.18571 -13.44733 -13.30786 -13.16849 -12.93052 -12.57810 -12.39198 -12.22322 -12.21019 -12.00832 -11.56170 -11.35914 -11.27922 -11.17957 -10.89423 -10.88707 -10.74380 -10.15939 -9.77543 -9.23839 -8.57353 -5.36834 -0.44861 0.51783 0.72514 0.78770 1.37346 1.52166 1.69756 2.10222 2.16743 2.55466 2.97056 3.19962 3.64112 3.78514 3.82830 3.85617 4.03785 4.21717 4.32896 4.40683 4.42158 4.51330 4.55638 4.56676 4.71798 4.77581 4.84113 5.03048 5.09620 5.17638 5.23715 5.32674 5.39185 5.55680 5.58685 6.06137 6.44157 6.77711 7.02239 7.41919 8.26241 8.93282 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.005083 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.516701 B = 5506.984185 C = 6444.411378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.084 4.084 3 Si 1.098 2.902 4 H -0.287 1.287 5 H -0.316 1.316 6 H -0.240 1.240 7 C -0.285 4.285 8 H 0.046 0.954 9 N -0.627 5.627 10 C 0.103 3.897 11 H 0.079 0.921 12 C -0.132 4.132 13 C -0.117 4.117 14 C 0.126 3.874 15 H 0.091 0.909 16 C 0.136 3.864 17 H 0.106 0.894 18 N -0.693 5.693 19 C 0.584 3.416 20 O -0.562 6.562 21 C 0.024 3.976 22 C -0.153 4.153 23 C -0.259 4.259 24 S 0.520 5.480 25 N -0.564 5.564 26 C -0.131 4.131 27 H 0.245 0.755 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.406 0.594 33 H 0.178 0.822 34 H 0.229 0.771 35 H 0.040 0.960 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.368 -12.563 10.957 19.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.276 4.276 3 Si 0.927 3.073 4 H -0.215 1.215 5 H -0.245 1.245 6 H -0.164 1.164 7 C -0.414 4.414 8 H 0.064 0.936 9 N -0.351 5.351 10 C -0.003 4.003 11 H 0.096 0.904 12 C -0.171 4.171 13 C -0.157 4.157 14 C 0.019 3.981 15 H 0.109 0.891 16 C 0.030 3.970 17 H 0.123 0.877 18 N -0.341 5.341 19 C 0.367 3.633 20 O -0.442 6.442 21 C -0.149 4.149 22 C -0.185 4.185 23 C -0.408 4.408 24 S 0.675 5.325 25 N -0.400 5.400 26 C -0.171 4.171 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.241 0.759 33 H 0.195 0.805 34 H 0.246 0.754 35 H 0.059 0.941 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.899 -10.928 10.271 17.439 hybrid contribution 0.633 -1.357 0.190 1.509 sum 9.532 -12.285 10.461 18.741 Atomic orbital electron populations 1.71037 1.07015 1.28738 1.54567 1.26915 0.96344 1.04219 1.00158 0.83463 0.75131 0.72189 0.76517 1.21517 1.24520 1.16445 1.19877 0.86386 0.94748 1.40343 0.93629 1.46939 1.07941 1.13089 1.67117 1.23543 0.91290 0.92538 0.92896 0.90381 1.23031 0.97558 0.97493 0.99015 1.22731 0.97889 0.95146 0.99888 1.23371 0.89318 0.92469 0.92915 0.89121 1.22620 0.93664 0.88541 0.92196 0.87653 1.45963 1.17197 1.44264 1.26725 1.17631 0.85935 0.79450 0.80333 1.90720 1.19404 1.66047 1.68006 1.21231 0.90721 1.03832 0.99073 1.21488 1.03741 0.98166 0.95055 1.27664 0.99138 1.05571 1.08427 1.80282 1.15675 1.28635 1.07957 1.72080 1.13133 1.21965 1.32846 1.23389 1.01059 0.95556 0.97121 0.94580 0.92189 0.88530 0.88687 0.91799 0.75937 0.80507 0.75438 0.94075 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.08 13.70 21.65 0.30 -62.78 16 2 C -0.08 -5.00 5.50 84.86 0.47 -4.54 16 3 Si 1.10 53.67 25.01 68.60 1.72 55.38 16 4 H -0.29 -13.37 6.60 99.48 0.66 -12.72 16 5 H -0.32 -16.01 7.11 99.48 0.71 -15.31 16 6 H -0.24 -10.23 4.94 99.48 0.49 -9.74 16 7 C -0.29 -16.22 10.81 84.03 0.91 -15.31 16 8 H 0.05 2.82 8.06 -2.91 -0.02 2.79 16 9 N -0.63 -29.01 2.83 -614.40 -1.74 -30.75 16 10 C 0.10 4.13 3.61 46.39 0.17 4.30 16 11 H 0.08 3.41 3.45 -2.39 -0.01 3.41 16 12 C -0.13 -4.22 6.20 31.99 0.20 -4.02 16 13 C -0.12 -3.53 6.41 31.99 0.21 -3.32 16 14 C 0.13 4.65 5.06 46.23 0.23 4.88 16 15 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 16 C 0.14 4.70 2.80 46.61 0.13 4.83 16 17 H 0.11 3.33 7.22 -2.38 -0.02 3.31 16 18 N -0.69 -25.28 5.08 -437.91 -2.22 -27.51 16 19 C 0.58 20.48 7.81 86.74 0.68 21.15 16 20 O -0.56 -21.13 16.30 -3.93 -0.06 -21.19 16 21 C 0.02 0.73 6.66 42.13 0.28 1.01 16 22 C -0.15 -3.40 9.98 21.83 0.22 -3.18 16 23 C -0.26 -3.82 11.41 67.07 0.76 -3.05 16 24 S 0.52 9.56 23.20 -56.49 -1.31 8.25 16 25 N -0.56 -16.64 10.71 -75.29 -0.81 -17.45 16 26 C -0.13 -4.73 6.25 32.38 0.20 -4.53 16 27 H 0.24 16.07 8.73 -92.71 -0.81 15.26 16 28 H 0.06 2.02 6.50 -2.39 -0.02 2.00 16 29 H 0.10 2.41 7.83 -2.39 -0.02 2.39 16 30 H 0.09 2.23 7.82 -2.39 -0.02 2.21 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.41 16.12 8.12 -92.71 -0.75 15.36 16 33 H 0.18 3.61 7.99 -2.91 -0.02 3.58 16 34 H 0.23 1.27 8.06 -2.91 -0.02 1.25 16 35 H 0.04 1.66 7.98 -2.39 -0.02 1.64 16 36 H 0.09 2.85 7.83 -2.39 -0.02 2.84 16 Total: -1.00 -74.66 303.84 0.39 -74.28 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.07 Total: 23.55 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 4.45 Total: -1.78 kcal Atomic # 7 Polarization: -134.02 SS G_CDS: -4.47 Total: -138.49 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.06 Total: -21.19 kcal Atomic # 14 Polarization: 53.67 SS G_CDS: 1.72 Total: 55.38 kcal Atomic # 16 Polarization: 9.56 SS G_CDS: -1.31 Total: 8.25 kcal Total: -74.66 0.39 -74.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097304742.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.966 kcal (2) G-P(sol) polarization free energy of solvation -74.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds