Wall clock time and date at job start Tue Mar 31 2020 06:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00470 * 2 1 4 4 H 1.48497 * 109.46936 * 274.00560 * 3 2 1 5 5 H 1.48496 * 109.47266 * 34.00398 * 3 2 1 6 6 H 1.48504 * 109.47066 * 154.00610 * 3 2 1 7 7 C 1.38813 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 189.34790 * 7 2 1 9 9 N 1.36938 * 120.00008 * 9.34534 * 7 2 1 10 10 C 1.50238 * 130.83679 * 5.55473 * 9 7 2 11 11 H 1.08994 * 115.86025 * 0.33013 * 10 9 7 12 12 C 1.55847 * 101.04773 * 233.94046 * 10 9 7 13 13 C 1.54843 * 103.44847 * 327.06156 * 12 10 9 14 14 C 1.50235 * 130.83829 * 185.51838 * 9 7 2 15 15 H 1.08994 * 115.86334 * 359.67092 * 14 9 7 16 16 C 1.55848 * 101.05394 * 233.99401 * 14 9 7 17 17 H 1.09001 * 110.62971 * 208.58066 * 16 14 9 18 18 N 1.46498 * 110.62651 * 85.55100 * 16 14 9 19 19 C 1.34774 * 119.99696 * 155.00212 * 18 16 14 20 20 O 1.21616 * 120.00507 * 0.02562 * 19 18 16 21 21 C 1.47263 * 119.99945 * 180.02562 * 19 18 16 22 22 N 1.30555 * 125.54324 * 180.02562 * 21 19 18 23 23 C 1.30697 * 115.90940 * 179.97438 * 22 21 19 24 24 C 1.34245 * 115.78210 * 359.97438 * 23 22 21 25 25 S 1.71071 * 109.08780 * 359.72814 * 24 23 22 26 26 C 1.54860 * 103.44287 * 327.06413 * 16 14 9 27 27 H 0.97000 * 119.99287 * 359.97438 * 1 2 3 28 28 H 1.08996 * 110.62336 * 85.55622 * 12 10 9 29 29 H 1.09000 * 110.62514 * 208.41163 * 12 10 9 30 30 H 1.08997 * 110.63305 * 241.51170 * 13 12 10 31 31 H 1.09001 * 110.62530 * 118.48832 * 13 12 10 32 32 H 0.96997 * 120.00237 * 335.00397 * 18 16 14 33 33 H 1.07994 * 122.11683 * 179.97438 * 23 22 21 34 34 H 1.07996 * 125.45118 * 179.97438 * 24 23 22 35 35 H 1.08992 * 110.62723 * 241.51093 * 26 16 14 36 36 H 1.09002 * 110.62447 * 118.49021 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4131 2.0952 -1.3966 5 1 1.4928 2.6267 0.7830 6 1 3.5876 1.4170 0.6136 7 6 2.0102 -1.2022 0.0005 8 1 3.0794 -1.2084 0.1525 9 7 1.3391 -2.3803 -0.1915 10 6 -0.1002 -2.6472 -0.5300 11 1 -0.7311 -1.7668 -0.6517 12 6 -0.5001 -3.6249 0.6158 13 6 0.8047 -4.4128 0.8888 14 6 1.8155 -3.8037 -0.1293 15 1 2.8716 -3.9420 0.1018 16 6 1.3569 -4.3334 -1.5214 17 1 1.1569 -5.4041 -1.4781 18 7 2.3629 -4.0357 -2.5439 19 6 2.4402 -4.7953 -3.6544 20 8 1.6746 -5.7277 -3.8080 21 6 3.4519 -4.4964 -4.6820 22 7 3.6220 -5.1580 -5.7946 23 6 4.5791 -4.7282 -6.5739 24 6 5.2613 -3.6617 -6.1272 25 16 4.6226 -3.1827 -4.6142 26 6 0.0519 -3.5455 -1.7944 27 1 -0.4849 0.8401 0.0004 28 1 -0.8072 -3.0714 1.5032 29 1 -1.2949 -4.2952 0.2887 30 1 0.6591 -5.4756 0.6961 31 1 1.1448 -4.2500 1.9115 32 1 2.9733 -3.2918 -2.4216 33 1 4.8070 -5.2010 -7.5177 34 1 6.0794 -3.1806 -6.6426 35 1 -0.7950 -4.2254 -1.8864 36 1 0.1533 -2.9333 -2.6905 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098088781.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:35 Heat of formation + Delta-G solvation = 61.406440 kcal Electronic energy + Delta-G solvation = -21398.133695 eV Core-core repulsion = 18203.708472 eV Total energy + Delta-G solvation = -3194.425223 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.20220 -39.45694 -38.14702 -33.97025 -32.58289 -30.75483 -29.16950 -28.97121 -28.05292 -26.05372 -24.24616 -22.52741 -20.70522 -20.06553 -19.58171 -18.93019 -18.48075 -17.04846 -16.69009 -15.94966 -15.30189 -15.19766 -14.83412 -14.20716 -14.07161 -13.72346 -13.60491 -13.40183 -12.94092 -12.11348 -11.89672 -11.68077 -11.33701 -11.19103 -10.98826 -10.93466 -10.59041 -10.43077 -10.32947 -10.12416 -9.98674 -9.82445 -9.70595 -9.39208 -9.20794 -9.09892 -8.93408 -8.63902 -6.99823 -5.81976 -3.18302 0.16183 1.08158 1.51090 2.34643 3.06527 3.32321 3.33368 3.37769 3.40745 4.36328 4.48744 4.90146 4.93332 5.06808 5.18264 5.28623 5.58435 5.62177 5.82969 5.84285 6.00369 6.02352 6.10639 6.20430 6.36742 6.42263 6.54930 6.67999 6.77431 6.89660 7.00103 7.25749 7.40070 7.44134 7.72861 7.78019 8.08041 8.32294 9.00159 9.64768 10.46473 11.29158 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.005706 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.068377 B = 4905.737895 C = 6291.491848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.219 4.219 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.158 3.842 11 H 0.146 0.854 12 C -0.135 4.135 13 C -0.127 4.127 14 C 0.125 3.875 15 H 0.090 0.910 16 C 0.129 3.871 17 H 0.087 0.913 18 N -0.694 5.694 19 C 0.588 3.412 20 O -0.511 6.511 21 C 0.002 3.998 22 N -0.406 5.406 23 C 0.026 3.974 24 C -0.273 4.273 25 S 0.194 5.806 26 C -0.147 4.147 27 H 0.254 0.746 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.402 0.598 33 H 0.178 0.822 34 H 0.183 0.817 35 H 0.059 0.941 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.301 -6.137 -7.185 12.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.347 4.347 8 H 0.097 0.903 9 N -0.311 5.311 10 C 0.051 3.949 11 H 0.163 0.837 12 C -0.174 4.174 13 C -0.167 4.167 14 C 0.016 3.984 15 H 0.108 0.892 16 C 0.024 3.976 17 H 0.105 0.895 18 N -0.345 5.345 19 C 0.369 3.631 20 O -0.386 6.386 21 C -0.274 4.274 22 N -0.122 5.122 23 C -0.131 4.131 24 C -0.414 4.414 25 S 0.448 5.552 26 C -0.188 4.188 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.237 0.763 33 H 0.195 0.805 34 H 0.200 0.800 35 H 0.077 0.923 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.616 -6.119 -6.595 11.787 hybrid contribution 1.145 0.857 -1.000 1.745 sum 8.761 -5.262 -7.594 12.732 Atomic orbital electron populations 1.69613 1.05035 1.25164 1.56344 1.24714 0.95547 0.97543 1.02550 0.86113 0.78648 0.83542 0.77513 1.21667 1.21772 1.20651 1.18996 0.91033 0.82185 1.42497 0.90328 1.46573 1.05996 0.98645 1.79908 1.23564 0.87379 0.95301 0.88665 0.83689 1.23012 0.95423 0.97988 1.01014 1.22862 0.97149 0.97553 0.99157 1.23182 0.96556 0.87141 0.91528 0.89219 1.22808 0.88029 0.99034 0.87754 0.89537 1.45869 1.37072 1.32358 1.19179 1.16734 0.82345 0.83188 0.80840 1.90818 1.41307 1.29480 1.76972 1.27793 1.02828 0.97967 0.98811 1.66652 1.16619 1.27245 1.01730 1.21850 0.93293 0.96253 1.01722 1.26805 1.08373 1.03925 1.02298 1.84209 1.26161 1.29504 1.15368 1.23519 0.95388 0.98656 1.01219 0.93526 0.92330 0.93314 0.92909 0.92279 0.76286 0.80496 0.79951 0.92281 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.04 10.64 55.49 0.59 -24.45 16 2 C -0.01 -0.18 5.47 -17.43 -0.10 -0.28 16 3 Si 0.91 20.76 29.56 -169.99 -5.03 15.73 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.22 -5.52 10.56 -15.06 -0.16 -5.68 16 8 H 0.08 1.90 7.85 -52.49 -0.41 1.49 16 9 N -0.59 -13.44 2.98 -145.81 -0.43 -13.87 16 10 C 0.16 3.46 4.67 -62.80 -0.29 3.17 16 11 H 0.15 3.67 5.73 -51.93 -0.30 3.37 16 12 C -0.13 -2.61 6.44 -24.24 -0.16 -2.76 16 13 C -0.13 -2.24 6.44 -24.24 -0.16 -2.39 16 14 C 0.12 2.33 5.06 -62.80 -0.32 2.01 16 15 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 16 C 0.13 2.33 2.80 -65.43 -0.18 2.15 16 17 H 0.09 1.55 7.23 -51.93 -0.38 1.17 16 18 N -0.69 -11.80 5.07 -52.52 -0.27 -12.07 16 19 C 0.59 10.46 7.81 -12.59 -0.10 10.36 16 20 O -0.51 -10.68 16.72 5.26 0.09 -10.59 16 21 C 0.00 0.04 7.46 -14.43 -0.11 -0.07 16 22 N -0.41 -6.30 10.59 -11.50 -0.12 -6.42 16 23 C 0.03 0.30 11.24 -19.44 -0.22 0.08 16 24 C -0.27 -2.64 11.09 29.32 0.33 -2.32 16 25 S 0.19 2.25 22.31 -107.50 -2.40 -0.15 16 26 C -0.15 -2.89 6.23 -24.23 -0.15 -3.04 16 27 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.84 7.82 -51.93 -0.41 0.43 16 30 H 0.05 0.81 7.82 -51.93 -0.41 0.41 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.40 6.50 7.80 -40.82 -0.32 6.18 16 33 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.06 1.08 7.82 -51.93 -0.41 0.67 16 36 H 0.06 1.26 7.98 -51.93 -0.41 0.85 16 LS Contribution 313.36 15.07 4.72 4.72 Total: -1.00 -30.25 313.36 -8.74 -38.99 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.28 Total: 6.90 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.61 Total: 1.22 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.23 Total: -56.82 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.40 Total: -0.15 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.25 -8.74 -38.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098088781.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.396 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds