Wall clock time and date at job start Tue Mar 31 2020 06:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00470 * 2 1 4 4 H 1.48497 * 109.46936 * 274.00560 * 3 2 1 5 5 H 1.48496 * 109.47266 * 34.00398 * 3 2 1 6 6 H 1.48504 * 109.47066 * 154.00610 * 3 2 1 7 7 C 1.38813 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 189.34790 * 7 2 1 9 9 N 1.36938 * 120.00008 * 9.34534 * 7 2 1 10 10 C 1.50238 * 130.83679 * 5.55473 * 9 7 2 11 11 H 1.08994 * 115.86025 * 0.33013 * 10 9 7 12 12 C 1.55847 * 101.04773 * 233.94046 * 10 9 7 13 13 C 1.54843 * 103.44847 * 327.06156 * 12 10 9 14 14 C 1.50235 * 130.83829 * 185.51838 * 9 7 2 15 15 H 1.08994 * 115.86334 * 359.67092 * 14 9 7 16 16 C 1.55848 * 101.05394 * 233.99401 * 14 9 7 17 17 H 1.09001 * 110.62971 * 208.58066 * 16 14 9 18 18 N 1.46498 * 110.62651 * 85.55100 * 16 14 9 19 19 C 1.34774 * 119.99696 * 155.00212 * 18 16 14 20 20 O 1.21616 * 120.00507 * 0.02562 * 19 18 16 21 21 C 1.47263 * 119.99945 * 180.02562 * 19 18 16 22 22 N 1.30555 * 125.54324 * 180.02562 * 21 19 18 23 23 C 1.30697 * 115.90940 * 179.97438 * 22 21 19 24 24 C 1.34245 * 115.78210 * 359.97438 * 23 22 21 25 25 S 1.71071 * 109.08780 * 359.72814 * 24 23 22 26 26 C 1.54860 * 103.44287 * 327.06413 * 16 14 9 27 27 H 0.97000 * 119.99287 * 359.97438 * 1 2 3 28 28 H 1.08996 * 110.62336 * 85.55622 * 12 10 9 29 29 H 1.09000 * 110.62514 * 208.41163 * 12 10 9 30 30 H 1.08997 * 110.63305 * 241.51170 * 13 12 10 31 31 H 1.09001 * 110.62530 * 118.48832 * 13 12 10 32 32 H 0.96997 * 120.00237 * 335.00397 * 18 16 14 33 33 H 1.07994 * 122.11683 * 179.97438 * 23 22 21 34 34 H 1.07996 * 125.45118 * 179.97438 * 24 23 22 35 35 H 1.08992 * 110.62723 * 241.51093 * 26 16 14 36 36 H 1.09002 * 110.62447 * 118.49021 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4131 2.0952 -1.3966 5 1 1.4928 2.6267 0.7830 6 1 3.5876 1.4170 0.6136 7 6 2.0102 -1.2022 0.0005 8 1 3.0794 -1.2084 0.1525 9 7 1.3391 -2.3803 -0.1915 10 6 -0.1002 -2.6472 -0.5300 11 1 -0.7311 -1.7668 -0.6517 12 6 -0.5001 -3.6249 0.6158 13 6 0.8047 -4.4128 0.8888 14 6 1.8155 -3.8037 -0.1293 15 1 2.8716 -3.9420 0.1018 16 6 1.3569 -4.3334 -1.5214 17 1 1.1569 -5.4041 -1.4781 18 7 2.3629 -4.0357 -2.5439 19 6 2.4402 -4.7953 -3.6544 20 8 1.6746 -5.7277 -3.8080 21 6 3.4519 -4.4964 -4.6820 22 7 3.6220 -5.1580 -5.7946 23 6 4.5791 -4.7282 -6.5739 24 6 5.2613 -3.6617 -6.1272 25 16 4.6226 -3.1827 -4.6142 26 6 0.0519 -3.5455 -1.7944 27 1 -0.4849 0.8401 0.0004 28 1 -0.8072 -3.0714 1.5032 29 1 -1.2949 -4.2952 0.2887 30 1 0.6591 -5.4756 0.6961 31 1 1.1448 -4.2500 1.9115 32 1 2.9733 -3.2918 -2.4216 33 1 4.8070 -5.2010 -7.5177 34 1 6.0794 -3.1806 -6.6426 35 1 -0.7950 -4.2254 -1.8864 36 1 0.1533 -2.9333 -2.6905 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098088781.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:34 Heat of formation + Delta-G solvation = 41.110897 kcal Electronic energy + Delta-G solvation = -21399.013776 eV Core-core repulsion = 18203.708472 eV Total energy + Delta-G solvation = -3195.305304 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.50249 -40.70297 -39.53940 -35.45195 -34.42115 -31.77193 -30.96096 -30.45142 -29.52901 -27.20252 -26.05777 -23.75949 -22.08816 -21.61362 -20.91396 -20.21957 -19.77226 -18.81565 -17.82219 -17.33765 -16.76412 -16.45723 -16.30527 -15.75563 -15.43350 -15.13323 -14.87692 -14.51956 -14.35269 -13.74762 -13.65016 -12.92967 -12.86364 -12.75673 -12.71011 -12.54112 -12.10635 -11.91908 -11.88989 -11.75887 -11.62711 -11.15007 -10.87921 -10.79318 -10.76006 -10.69832 -10.22974 -9.91047 -8.85065 -7.76360 -5.12767 -0.82940 0.11396 0.61778 1.31023 1.51869 1.52365 1.60561 1.82449 2.13605 2.52932 3.36992 3.42525 3.46015 3.86160 3.99958 4.06665 4.26965 4.27886 4.35027 4.45758 4.48585 4.63013 4.65932 4.83569 4.90660 5.02368 5.07717 5.17286 5.19477 5.39744 5.47770 5.57454 5.69886 5.90696 6.24112 6.28913 6.61403 6.98849 7.06500 7.74448 8.60876 9.33710 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.005706 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.068377 B = 4905.737895 C = 6291.491848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.065 4.065 3 Si 0.969 3.031 4 H -0.291 1.291 5 H -0.304 1.304 6 H -0.266 1.266 7 C -0.216 4.216 8 H 0.089 0.911 9 N -0.609 5.609 10 C 0.145 3.855 11 H 0.108 0.892 12 C -0.129 4.129 13 C -0.119 4.119 14 C 0.127 3.873 15 H 0.107 0.893 16 C 0.139 3.861 17 H 0.095 0.905 18 N -0.690 5.690 19 C 0.590 3.410 20 O -0.553 6.553 21 C -0.049 4.049 22 N -0.435 5.435 23 C 0.007 3.993 24 C -0.241 4.241 25 S 0.231 5.769 26 C -0.138 4.138 27 H 0.245 0.755 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.406 0.594 33 H 0.208 0.792 34 H 0.227 0.773 35 H 0.072 0.928 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.905 -6.678 -8.054 15.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.258 4.258 3 Si 0.799 3.201 4 H -0.219 1.219 5 H -0.232 1.232 6 H -0.191 1.191 7 C -0.344 4.344 8 H 0.106 0.894 9 N -0.331 5.331 10 C 0.038 3.962 11 H 0.126 0.874 12 C -0.168 4.168 13 C -0.159 4.159 14 C 0.020 3.980 15 H 0.125 0.875 16 C 0.033 3.967 17 H 0.113 0.887 18 N -0.340 5.340 19 C 0.373 3.627 20 O -0.431 6.431 21 C -0.323 4.323 22 N -0.153 5.153 23 C -0.149 4.149 24 C -0.381 4.381 25 S 0.484 5.516 26 C -0.179 4.179 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.242 0.758 33 H 0.224 0.776 34 H 0.243 0.757 35 H 0.090 0.910 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.249 -6.684 -7.452 14.327 hybrid contribution 0.437 1.036 -0.826 1.395 sum 10.686 -5.648 -8.279 14.650 Atomic orbital electron populations 1.69842 1.06310 1.24891 1.58462 1.25420 0.96212 1.00373 1.03775 0.85190 0.77989 0.79969 0.76994 1.21867 1.23154 1.19073 1.19372 0.91639 0.83151 1.40279 0.89370 1.46753 1.06509 0.99763 1.80064 1.23403 0.86978 0.95043 0.90775 0.87419 1.22914 0.97181 0.97728 0.98980 1.22824 0.95378 0.98893 0.98777 1.23385 0.97784 0.84787 0.92034 0.87517 1.22636 0.87391 0.98991 0.87660 0.88714 1.45765 1.36801 1.32431 1.19049 1.17040 0.82276 0.82311 0.81042 1.90772 1.43204 1.31177 1.77951 1.27248 1.04888 1.00983 0.99150 1.66620 1.18064 1.28355 1.02223 1.22324 0.92870 0.97182 1.02515 1.27374 1.07761 1.02250 1.00757 1.84079 1.24185 1.27102 1.16271 1.23386 0.97063 0.98309 0.99093 0.94580 0.94499 0.91085 0.89835 0.92170 0.75813 0.77568 0.75682 0.90991 0.94294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.59 10.64 21.65 0.23 -53.36 16 2 C -0.06 -3.42 5.47 84.86 0.46 -2.96 16 3 Si 0.97 43.00 29.56 68.60 2.03 45.03 16 4 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 7 C -0.22 -10.80 10.56 84.03 0.89 -9.92 16 8 H 0.09 4.14 7.85 -2.91 -0.02 4.12 16 9 N -0.61 -27.63 2.98 -615.24 -1.84 -29.46 16 10 C 0.14 6.46 4.67 46.23 0.22 6.67 16 11 H 0.11 5.72 5.73 -2.39 -0.01 5.70 16 12 C -0.13 -4.90 6.44 32.21 0.21 -4.69 16 13 C -0.12 -3.94 6.44 32.21 0.21 -3.73 16 14 C 0.13 4.55 5.06 46.23 0.23 4.79 16 15 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 16 C 0.14 4.88 2.80 46.61 0.13 5.01 16 17 H 0.09 3.23 7.23 -2.39 -0.02 3.21 16 18 N -0.69 -23.09 5.07 -438.31 -2.22 -25.32 16 19 C 0.59 20.99 7.81 86.62 0.68 21.67 16 20 O -0.55 -23.42 16.72 -4.08 -0.07 -23.49 16 21 C -0.05 -1.49 7.46 87.26 0.65 -0.84 16 22 N -0.43 -13.04 10.59 -190.31 -2.02 -15.06 16 23 C 0.01 0.15 11.24 83.95 0.94 1.09 16 24 C -0.24 -3.67 11.09 66.91 0.74 -2.93 16 25 S 0.23 4.78 22.31 -56.49 -1.26 3.52 16 26 C -0.14 -5.44 6.23 32.21 0.20 -5.24 16 27 H 0.24 13.71 8.31 -92.71 -0.77 12.94 16 28 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 29 H 0.07 2.35 7.82 -2.39 -0.02 2.33 16 30 H 0.08 2.29 7.82 -2.39 -0.02 2.27 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.41 12.80 7.80 -92.71 -0.72 12.08 16 33 H 0.21 2.68 8.06 -2.91 -0.02 2.65 16 34 H 0.23 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.07 2.60 7.82 -2.39 -0.02 2.59 16 36 H 0.04 1.67 7.98 -2.39 -0.02 1.65 16 Total: -1.00 -67.93 313.36 0.81 -67.12 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.39 Total: 22.10 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 5.56 Total: 8.92 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -5.84 Total: -123.19 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.07 Total: -23.49 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.26 Total: 3.52 kcal Total: -67.93 0.81 -67.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098088781.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.229 kcal (2) G-P(sol) polarization free energy of solvation -67.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds