Wall clock time and date at job start Tue Mar 31 2020 07:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00088 * 2 1 4 4 C 1.50697 * 119.99618 * 180.02562 * 2 1 3 5 5 C 1.53002 * 109.47398 * 94.99648 * 4 2 1 6 6 C 1.50699 * 109.47269 * 184.92559 * 5 4 2 7 7 O 1.21287 * 119.99829 * 354.93838 * 6 5 4 8 8 N 1.34773 * 120.00024 * 174.92959 * 6 5 4 9 9 C 1.37132 * 120.00312 * 3.39656 * 8 6 5 10 10 H 1.07995 * 119.99633 * 305.52737 * 9 8 6 11 11 C 1.38881 * 120.00012 * 125.52040 * 9 8 6 12 12 N 1.31429 * 119.99745 * 181.43454 * 11 9 8 13 13 Si 1.86794 * 120.00411 * 1.42953 * 11 9 8 14 14 H 1.48502 * 109.47270 * 95.25241 * 13 11 9 15 15 H 1.48503 * 109.47634 * 215.25339 * 13 11 9 16 16 H 1.48501 * 109.46864 * 335.25602 * 13 11 9 17 17 C 1.39814 * 119.99995 * 183.39270 * 8 6 5 18 18 C 1.38958 * 120.06257 * 171.67756 * 17 8 6 19 19 C 1.38075 * 119.93464 * 180.29561 * 18 17 8 20 20 C 1.38421 * 120.05905 * 359.45274 * 19 18 17 21 21 Cl 1.73604 * 119.93444 * 180.27214 * 20 19 18 22 22 C 1.38420 * 120.13564 * 0.55002 * 20 19 18 23 23 C 1.38078 * 120.05922 * 359.72383 * 22 20 19 24 24 H 1.07995 * 120.00259 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.99983 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46892 * 270.00503 * 3 2 1 27 27 H 1.09003 * 109.46710 * 30.00214 * 3 2 1 28 28 H 1.08995 * 109.46829 * 150.00454 * 3 2 1 29 29 H 1.09000 * 109.47632 * 334.99384 * 4 2 1 30 30 H 1.09002 * 109.47053 * 214.99372 * 4 2 1 31 31 H 1.09000 * 109.46975 * 64.92713 * 5 4 2 32 32 H 1.08997 * 109.47336 * 304.92945 * 5 4 2 33 33 H 0.96999 * 119.99775 * 180.02562 * 12 11 9 34 34 H 1.07999 * 120.03657 * 0.02724 * 18 17 8 35 35 H 1.07997 * 119.97125 * 179.72241 * 19 18 17 36 36 H 1.07993 * 119.97363 * 179.70245 * 22 20 19 37 37 H 1.08001 * 120.02852 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 2.4272 -1.6834 -1.4378 6 6 3.0730 -3.0450 -1.4507 7 8 3.3108 -3.6133 -0.4059 8 7 3.3863 -3.6311 -2.6232 9 6 3.1816 -2.9601 -3.8015 10 1 2.2057 -2.5591 -4.0320 11 6 4.2293 -2.7963 -4.6983 12 7 4.0404 -2.1289 -5.8146 13 14 5.9070 -3.5242 -4.3178 14 1 6.0304 -4.8518 -4.9716 15 1 6.9671 -2.6195 -4.8307 16 1 6.0573 -3.6800 -2.8487 17 6 3.9199 -4.9233 -2.6382 18 6 4.0821 -5.5955 -3.8435 19 6 4.6037 -6.8739 -3.8547 20 6 4.9755 -7.4815 -2.6678 21 17 5.6375 -9.0862 -2.6863 22 6 4.8151 -6.8144 -1.4656 23 6 4.2888 -5.5380 -1.4478 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 2.2451 1.6198 -1.0277 27 1 1.4744 2.0647 0.5139 28 1 3.0159 1.1747 0.5137 29 1 1.4385 -2.0857 0.4335 30 1 2.9742 -1.1992 0.5888 31 1 3.1224 -0.9477 -1.8422 32 1 1.5242 -1.7038 -2.0478 33 1 4.7721 -2.0147 -6.4412 34 1 3.7963 -5.1203 -4.7702 35 1 4.7257 -7.3986 -4.7907 36 1 5.1016 -7.2927 -0.5408 37 1 4.1635 -5.0181 -0.5095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121128720.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:04 Heat of formation + Delta-G solvation = 10.235200 kcal Electronic energy + Delta-G solvation = -21141.043064 eV Core-core repulsion = 17910.062432 eV Total energy + Delta-G solvation = -3230.980632 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.28179 -38.04015 -36.36601 -35.89571 -35.07443 -32.31465 -31.11679 -30.42421 -28.80902 -27.12566 -25.49607 -24.27608 -22.16109 -21.46326 -19.41695 -18.24880 -18.12665 -16.56128 -16.14281 -15.90534 -15.17380 -14.64927 -14.38437 -14.12176 -13.88850 -13.51985 -13.34445 -13.11356 -12.93536 -12.76632 -12.57151 -12.25212 -11.79824 -11.60328 -11.56555 -11.48337 -11.26794 -10.89632 -10.77590 -10.59444 -10.43681 -10.34897 -10.15780 -9.42597 -9.05621 -8.91319 -8.52469 -8.29287 -7.18000 -6.65385 -4.61980 1.70349 1.90268 2.38008 2.63213 3.05852 3.17085 3.24817 3.38318 3.95678 4.04725 4.34585 4.71597 5.00891 5.09803 5.37532 5.43628 5.55056 5.58910 5.70438 5.72736 5.82290 6.00032 6.03986 6.05132 6.07498 6.14035 6.31790 6.36434 6.55484 6.59867 6.69944 6.79846 6.93831 7.04655 7.06704 7.10626 7.53524 7.82488 8.03997 8.64906 8.94232 9.22837 10.36804 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.005120 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.193774 B = 5467.186092 C = 6577.930130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.121 4.121 4 C -0.073 4.073 5 C -0.110 4.110 6 C 0.502 3.498 7 O -0.558 6.558 8 N -0.408 5.408 9 C -0.369 4.369 10 H 0.112 0.888 11 C 0.083 3.917 12 N -0.854 5.854 13 Si 0.868 3.132 14 H -0.253 1.253 15 H -0.287 1.287 16 H -0.257 1.257 17 C 0.167 3.833 18 C -0.153 4.153 19 C -0.091 4.091 20 C -0.083 4.083 21 Cl -0.101 7.101 22 C -0.094 4.094 23 C -0.176 4.176 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.280 0.720 34 H 0.148 0.852 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.228 -0.497 6.195 6.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.116 4.116 3 C -0.178 4.178 4 C -0.111 4.111 5 C -0.149 4.149 6 C 0.295 3.705 7 O -0.442 6.442 8 N -0.116 5.116 9 C -0.495 4.495 10 H 0.129 0.871 11 C -0.127 4.127 12 N -0.487 5.487 13 Si 0.694 3.306 14 H -0.178 1.178 15 H -0.214 1.214 16 H -0.181 1.181 17 C 0.069 3.931 18 C -0.173 4.173 19 C -0.110 4.110 20 C -0.110 4.110 21 Cl -0.072 7.072 22 C -0.113 4.113 23 C -0.196 4.196 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.166 0.834 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.033 -0.714 6.495 6.616 hybrid contribution 0.943 -0.520 -0.432 1.160 sum -0.090 -1.234 6.063 6.188 Atomic orbital electron populations 1.23626 0.95259 1.01532 1.03771 1.21819 0.95430 0.95888 0.98486 1.20888 1.00050 0.94468 1.02352 1.20519 1.00316 0.93770 0.96514 1.21334 1.02262 0.94405 0.96924 1.21085 0.79294 0.87710 0.82431 1.90197 1.56165 1.64824 1.32996 1.41550 1.53248 1.09465 1.07365 1.19032 0.99167 1.36146 0.95189 0.87074 1.25481 0.98502 0.93865 0.94895 1.69641 1.33885 1.36271 1.08870 0.87044 0.82818 0.79843 0.80930 1.17794 1.21435 1.18138 1.18621 0.94677 0.86113 0.93699 1.21001 1.03109 0.94376 0.98860 1.20712 0.99099 0.94730 0.96488 1.20776 1.07705 0.86966 0.95588 1.98296 1.85155 1.24770 1.99003 1.20950 0.99494 0.94971 0.95923 1.22804 1.00633 0.95048 1.01101 0.88581 0.88849 0.91135 0.92247 0.91865 0.90944 0.90925 0.88407 0.89015 0.90903 0.83438 0.85693 0.85783 0.79583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.51 13.89 29.01 0.40 -2.11 16 2 C -0.12 -1.53 5.31 -101.07 -0.54 -2.07 16 3 C -0.12 -1.37 10.03 36.01 0.36 -1.01 16 4 C -0.07 -1.11 4.69 -27.88 -0.13 -1.24 16 5 C -0.11 -1.93 4.51 -27.88 -0.13 -2.06 16 6 C 0.50 10.61 7.57 -10.99 -0.08 10.52 16 7 O -0.56 -12.17 12.39 5.55 0.07 -12.10 16 8 N -0.41 -9.33 2.30 -58.98 -0.14 -9.47 16 9 C -0.37 -8.91 8.01 -14.94 -0.12 -9.03 16 10 H 0.11 2.79 7.69 -52.49 -0.40 2.39 16 11 C 0.08 2.06 4.61 -17.49 -0.08 1.98 16 12 N -0.85 -22.07 13.96 55.49 0.77 -21.30 16 13 Si 0.87 20.13 23.84 -169.99 -4.05 16.08 16 14 H -0.25 -5.67 6.15 56.52 0.35 -5.33 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.26 -6.27 6.48 56.52 0.37 -5.90 16 17 C 0.17 3.74 4.13 -83.68 -0.35 3.39 16 18 C -0.15 -3.29 5.58 -39.37 -0.22 -3.51 16 19 C -0.09 -1.75 9.56 -39.57 -0.38 -2.13 16 20 C -0.08 -1.52 6.32 -39.45 -0.25 -1.77 16 21 Cl -0.10 -1.59 28.95 -51.86 -1.50 -3.09 16 22 C -0.09 -1.75 9.82 -39.57 -0.39 -2.14 16 23 C -0.18 -3.70 9.03 -39.37 -0.36 -4.06 16 24 H 0.10 1.16 7.99 -52.49 -0.42 0.74 16 25 H 0.09 1.00 8.04 -52.48 -0.42 0.58 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.58 8.06 -51.93 -0.42 0.16 16 28 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.07 1.12 7.88 -51.93 -0.41 0.72 16 30 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 31 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 32 H 0.09 1.60 7.74 -51.93 -0.40 1.19 16 33 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.15 3.31 5.68 -52.49 -0.30 3.02 16 35 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 37 H 0.19 4.02 4.58 -56.01 -0.26 3.76 16 LS Contribution 318.78 15.07 4.80 4.80 Total: -1.00 -25.76 318.78 -7.08 -32.84 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -4.78 Total: 7.46 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -2.25 Total: -15.23 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: 0.64 Total: -30.76 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.07 Total: -12.10 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.05 Total: 16.08 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -1.50 Total: -3.09 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -25.76 -7.08 -32.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121128720.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.073 kcal (2) G-P(sol) polarization free energy of solvation -25.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds