Wall clock time and date at job start Tue Mar 31 2020 07:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00088 * 2 1 4 4 C 1.50697 * 119.99618 * 180.02562 * 2 1 3 5 5 C 1.53002 * 109.47398 * 94.99648 * 4 2 1 6 6 C 1.50699 * 109.47269 * 184.92559 * 5 4 2 7 7 O 1.21287 * 119.99829 * 354.93838 * 6 5 4 8 8 N 1.34773 * 120.00024 * 174.92959 * 6 5 4 9 9 C 1.37132 * 120.00312 * 3.39656 * 8 6 5 10 10 H 1.07995 * 119.99633 * 305.52737 * 9 8 6 11 11 C 1.38881 * 120.00012 * 125.52040 * 9 8 6 12 12 N 1.31429 * 119.99745 * 181.43454 * 11 9 8 13 13 Si 1.86794 * 120.00411 * 1.42953 * 11 9 8 14 14 H 1.48502 * 109.47270 * 95.25241 * 13 11 9 15 15 H 1.48503 * 109.47634 * 215.25339 * 13 11 9 16 16 H 1.48501 * 109.46864 * 335.25602 * 13 11 9 17 17 C 1.39814 * 119.99995 * 183.39270 * 8 6 5 18 18 C 1.38958 * 120.06257 * 171.67756 * 17 8 6 19 19 C 1.38075 * 119.93464 * 180.29561 * 18 17 8 20 20 C 1.38421 * 120.05905 * 359.45274 * 19 18 17 21 21 Cl 1.73604 * 119.93444 * 180.27214 * 20 19 18 22 22 C 1.38420 * 120.13564 * 0.55002 * 20 19 18 23 23 C 1.38078 * 120.05922 * 359.72383 * 22 20 19 24 24 H 1.07995 * 120.00259 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.99983 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46892 * 270.00503 * 3 2 1 27 27 H 1.09003 * 109.46710 * 30.00214 * 3 2 1 28 28 H 1.08995 * 109.46829 * 150.00454 * 3 2 1 29 29 H 1.09000 * 109.47632 * 334.99384 * 4 2 1 30 30 H 1.09002 * 109.47053 * 214.99372 * 4 2 1 31 31 H 1.09000 * 109.46975 * 64.92713 * 5 4 2 32 32 H 1.08997 * 109.47336 * 304.92945 * 5 4 2 33 33 H 0.96999 * 119.99775 * 180.02562 * 12 11 9 34 34 H 1.07999 * 120.03657 * 0.02724 * 18 17 8 35 35 H 1.07997 * 119.97125 * 179.72241 * 19 18 17 36 36 H 1.07993 * 119.97363 * 179.70245 * 22 20 19 37 37 H 1.08001 * 120.02852 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 2.4272 -1.6834 -1.4378 6 6 3.0730 -3.0450 -1.4507 7 8 3.3108 -3.6133 -0.4059 8 7 3.3863 -3.6311 -2.6232 9 6 3.1816 -2.9601 -3.8015 10 1 2.2057 -2.5591 -4.0320 11 6 4.2293 -2.7963 -4.6983 12 7 4.0404 -2.1289 -5.8146 13 14 5.9070 -3.5242 -4.3178 14 1 6.0304 -4.8518 -4.9716 15 1 6.9671 -2.6195 -4.8307 16 1 6.0573 -3.6800 -2.8487 17 6 3.9199 -4.9233 -2.6382 18 6 4.0821 -5.5955 -3.8435 19 6 4.6037 -6.8739 -3.8547 20 6 4.9755 -7.4815 -2.6678 21 17 5.6375 -9.0862 -2.6863 22 6 4.8151 -6.8144 -1.4656 23 6 4.2888 -5.5380 -1.4478 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 2.2451 1.6198 -1.0277 27 1 1.4744 2.0647 0.5139 28 1 3.0159 1.1747 0.5137 29 1 1.4385 -2.0857 0.4335 30 1 2.9742 -1.1992 0.5888 31 1 3.1224 -0.9477 -1.8422 32 1 1.5242 -1.7038 -2.0478 33 1 4.7721 -2.0147 -6.4412 34 1 3.7963 -5.1203 -4.7702 35 1 4.7257 -7.3986 -4.7907 36 1 5.1016 -7.2927 -0.5408 37 1 4.1635 -5.0181 -0.5095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121128720.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:04 Heat of formation + Delta-G solvation = -1.333622 kcal Electronic energy + Delta-G solvation = -21141.544726 eV Core-core repulsion = 17910.062432 eV Total energy + Delta-G solvation = -3231.482294 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.94254 -39.59295 -37.70684 -37.16083 -36.72942 -34.19099 -32.48016 -31.99285 -30.33444 -28.05479 -27.30311 -25.68143 -23.74419 -23.01846 -21.15898 -19.87839 -19.30224 -18.12334 -17.78446 -17.57089 -16.73223 -16.15308 -15.85029 -15.54680 -15.35402 -15.03023 -14.84256 -14.53778 -14.44801 -14.29938 -13.92997 -13.68271 -13.39176 -13.15737 -12.93852 -12.84987 -12.48820 -12.43159 -12.29691 -11.98146 -11.88504 -11.79221 -11.74026 -11.22574 -10.79455 -10.26836 -9.89137 -9.83467 -8.88837 -8.54657 -6.53918 0.12203 0.31384 1.18396 1.21260 1.29828 1.35908 1.37313 1.71872 2.09764 2.41849 2.63655 2.90212 3.71940 3.92732 3.96775 4.03506 4.21852 4.31555 4.39338 4.42991 4.49193 4.66309 4.74737 4.81537 4.90557 5.02528 5.04899 5.10914 5.12680 5.18021 5.25462 5.35307 5.38938 5.46948 5.76844 5.80469 5.99797 6.05042 6.22443 6.79444 7.14850 7.47218 8.47617 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.005120 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.193774 B = 5467.186092 C = 6577.930130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 C -0.119 4.119 4 C -0.064 4.064 5 C -0.102 4.102 6 C 0.493 3.507 7 O -0.567 6.567 8 N -0.422 5.422 9 C -0.358 4.358 10 H 0.095 0.905 11 C 0.059 3.941 12 N -0.885 5.885 13 Si 0.908 3.092 14 H -0.241 1.241 15 H -0.289 1.289 16 H -0.275 1.275 17 C 0.141 3.859 18 C -0.168 4.168 19 C -0.089 4.089 20 C -0.080 4.080 21 Cl -0.070 7.070 22 C -0.087 4.087 23 C -0.188 4.188 24 H 0.094 0.906 25 H 0.114 0.886 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.284 0.716 34 H 0.133 0.867 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 -1.419 6.946 7.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.133 4.133 3 C -0.176 4.176 4 C -0.102 4.102 5 C -0.141 4.141 6 C 0.288 3.712 7 O -0.451 6.451 8 N -0.131 5.131 9 C -0.484 4.484 10 H 0.112 0.888 11 C -0.148 4.148 12 N -0.520 5.520 13 Si 0.734 3.266 14 H -0.165 1.165 15 H -0.217 1.217 16 H -0.200 1.200 17 C 0.044 3.956 18 C -0.188 4.188 19 C -0.108 4.108 20 C -0.108 4.108 21 Cl -0.041 7.041 22 C -0.106 4.106 23 C -0.208 4.208 24 H 0.112 0.888 25 H 0.132 0.868 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.151 0.849 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.661 -1.655 7.248 7.464 hybrid contribution 0.788 -0.389 -0.596 1.062 sum 0.127 -2.044 6.651 6.960 Atomic orbital electron populations 1.23830 0.95023 1.02480 1.01925 1.21828 0.95822 0.95562 1.00062 1.20898 1.00269 0.93943 1.02484 1.20415 1.00373 0.94903 0.94500 1.21335 1.01701 0.92327 0.98775 1.21660 0.78941 0.88716 0.81932 1.90184 1.56501 1.65371 1.33034 1.41651 1.54145 1.10062 1.07282 1.18843 0.98341 1.35659 0.95606 0.88793 1.25806 1.00153 0.94074 0.94807 1.69683 1.34723 1.37825 1.09752 0.86433 0.80706 0.79948 0.79497 1.16470 1.21659 1.20005 1.18876 0.95708 0.86307 0.94683 1.20961 1.04428 0.95509 0.97950 1.20977 0.97992 0.93906 0.97968 1.20874 1.06535 0.88248 0.95117 1.98311 1.84552 1.22284 1.98946 1.21228 0.98004 0.93977 0.97362 1.22798 1.01497 0.96179 1.00325 0.88763 0.86807 0.91407 0.90365 0.91749 0.91604 0.91221 0.88673 0.89086 0.90548 0.84912 0.83395 0.82934 0.80320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.49 13.89 67.78 0.94 -3.54 16 2 C -0.13 -3.35 5.31 -16.49 -0.09 -3.44 16 3 C -0.12 -2.55 10.03 71.24 0.71 -1.83 16 4 C -0.06 -1.93 4.69 29.85 0.14 -1.79 16 5 C -0.10 -3.64 4.51 29.85 0.13 -3.51 16 6 C 0.49 21.23 7.57 87.66 0.66 21.89 16 7 O -0.57 -24.96 12.39 -3.05 -0.04 -25.00 16 8 N -0.42 -19.62 2.30 -458.89 -1.06 -20.68 16 9 C -0.36 -17.68 8.01 84.02 0.67 -17.00 16 10 H 0.09 4.89 7.69 -2.91 -0.02 4.87 16 11 C 0.06 2.97 4.61 84.91 0.39 3.37 16 12 N -0.89 -46.38 13.96 21.65 0.30 -46.07 16 13 Si 0.91 41.67 23.84 68.60 1.64 43.31 16 14 H -0.24 -10.41 6.15 99.48 0.61 -9.80 16 15 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 16 H -0.27 -13.36 6.48 99.48 0.64 -12.71 16 17 C 0.14 6.34 4.13 38.21 0.16 6.50 16 18 C -0.17 -7.13 5.58 22.40 0.12 -7.00 16 19 C -0.09 -3.25 9.56 22.27 0.21 -3.04 16 20 C -0.08 -2.73 6.32 22.36 0.14 -2.59 16 21 Cl -0.07 -1.96 28.95 -2.72 -0.08 -2.04 16 22 C -0.09 -3.04 9.82 22.27 0.22 -2.82 16 23 C -0.19 -7.79 9.03 22.40 0.20 -7.59 16 24 H 0.09 2.17 7.99 -2.91 -0.02 2.15 16 25 H 0.11 2.14 8.04 -2.91 -0.02 2.12 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.08 1.36 8.06 -2.39 -0.02 1.34 16 28 H 0.06 1.34 8.08 -2.39 -0.02 1.32 16 29 H 0.07 2.04 7.88 -2.39 -0.02 2.03 16 30 H 0.07 2.12 8.10 -2.39 -0.02 2.10 16 31 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 32 H 0.09 3.24 7.74 -2.39 -0.02 3.22 16 33 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 34 H 0.13 6.01 5.68 -2.91 -0.02 5.99 16 35 H 0.15 4.62 8.06 -2.91 -0.02 4.59 16 36 H 0.15 4.41 8.06 -2.91 -0.02 4.38 16 37 H 0.18 7.70 4.58 -58.69 -0.27 7.43 16 Total: -1.00 -54.31 318.78 6.05 -48.25 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.66 Total: 24.63 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 4.63 Total: -22.41 kcal Atomic # 7 Polarization: -66.00 SS G_CDS: -0.76 Total: -66.75 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.04 Total: -25.00 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.64 Total: 43.31 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.04 kcal Total: -54.31 6.05 -48.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121128720.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.921 kcal (2) G-P(sol) polarization free energy of solvation -54.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds