Wall clock time and date at job start Tue Mar 31 2020 06:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99818 * 2 1 4 4 H 1.48497 * 109.47309 * 272.70549 * 3 2 1 5 5 H 1.48504 * 109.47405 * 32.70892 * 3 2 1 6 6 H 1.48500 * 109.47174 * 152.70562 * 3 2 1 7 7 C 1.38806 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00128 * 345.42600 * 7 2 1 9 9 N 1.36938 * 119.99953 * 165.42126 * 7 2 1 10 10 C 1.46966 * 120.59642 * 150.51148 * 9 7 2 11 11 C 1.53370 * 108.63562 * 124.75056 * 10 9 7 12 12 N 1.46973 * 108.63370 * 49.42801 * 11 10 9 13 13 C 1.34773 * 120.59120 * 124.74863 * 12 11 10 14 14 O 1.21731 * 119.99943 * 185.17110 * 13 12 11 15 15 C 1.46245 * 120.00533 * 5.17544 * 13 12 11 16 16 C 1.35246 * 120.00309 * 185.64597 * 15 13 12 17 17 C 1.46394 * 119.99988 * 179.97438 * 16 15 13 18 18 N 1.30826 * 125.55167 * 179.97438 * 17 16 15 19 19 C 1.30811 * 115.81751 * 179.97438 * 18 17 16 20 20 C 1.34172 * 115.80203 * 0.02562 * 19 18 17 21 21 S 1.71060 * 109.15400 * 359.74971 * 20 19 18 22 22 C 1.46959 * 118.80955 * 304.77422 * 12 11 10 23 23 C 1.46970 * 120.59712 * 330.49403 * 9 7 2 24 24 H 0.97004 * 119.99835 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.60881 * 5.01352 * 10 9 7 26 26 H 1.08993 * 109.75445 * 244.58525 * 10 9 7 27 27 H 1.09001 * 109.61509 * 169.17221 * 11 10 9 28 28 H 1.09004 * 109.61239 * 289.68970 * 11 10 9 29 29 H 1.08003 * 119.99660 * 5.64409 * 15 13 12 30 30 H 1.07993 * 119.99590 * 0.02562 * 16 15 13 31 31 H 1.08001 * 122.09621 * 180.02562 * 19 18 17 32 32 H 1.08003 * 125.42142 * 180.02562 * 20 19 18 33 33 H 1.09005 * 109.61361 * 295.47869 * 22 12 11 34 34 H 1.09008 * 109.74798 * 175.05220 * 22 12 11 35 35 H 1.09004 * 109.60659 * 354.98759 * 23 9 7 36 36 H 1.08997 * 109.61066 * 115.50102 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4404 2.0795 -1.3985 5 1 1.4774 2.6355 0.7566 6 1 3.5752 1.4244 0.6420 7 6 2.0103 -1.2021 -0.0005 8 1 1.4964 -2.1224 0.2344 9 7 3.3466 -1.2210 -0.2991 10 6 4.2277 -2.2457 0.2787 11 6 4.9486 -2.9726 -0.8633 12 7 5.5273 -1.9689 -1.7676 13 6 6.8425 -1.9876 -2.0613 14 8 7.3284 -1.0976 -2.7349 15 6 7.6860 -3.0769 -1.5708 16 6 9.0236 -3.0377 -1.7674 17 6 9.8679 -4.1280 -1.2759 18 7 11.1676 -4.2014 -1.4059 19 6 11.7324 -5.2638 -0.8926 20 6 10.9036 -6.1377 -0.3012 21 16 9.3003 -5.5510 -0.4077 22 6 4.6463 -0.9443 -2.3452 23 6 3.9254 -0.2173 -1.2032 24 1 -0.4850 0.8401 0.0004 25 1 3.6335 -2.9596 0.8492 26 1 4.9610 -1.7745 0.9330 27 1 5.7423 -3.5983 -0.4553 28 1 4.2368 -3.5907 -1.4105 29 1 7.2408 -3.9128 -1.0516 30 1 9.4687 -2.2017 -2.2862 31 1 12.7988 -5.4272 -0.9417 32 1 11.2019 -7.0620 0.1712 33 1 3.9130 -1.4180 -2.9979 34 1 5.2381 -0.2299 -2.9177 35 1 3.1316 0.4084 -1.6114 36 1 4.6371 0.4008 -0.6561 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123522783.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:36 Heat of formation + Delta-G solvation = 73.049432 kcal Electronic energy + Delta-G solvation = -20574.012760 eV Core-core repulsion = 17380.092415 eV Total energy + Delta-G solvation = -3193.920345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.03361 -39.75491 -37.22154 -34.24616 -34.05255 -31.52980 -31.02876 -30.01996 -27.55519 -26.07783 -23.78852 -23.75002 -22.23821 -20.67529 -20.34207 -18.82243 -17.98154 -17.48338 -16.53727 -15.90911 -15.69332 -15.35950 -14.92076 -14.68447 -14.33368 -14.29217 -13.95520 -13.70166 -13.43621 -12.89972 -12.63654 -12.53761 -12.13384 -11.98961 -11.78763 -11.16703 -10.99142 -10.80738 -10.50376 -10.24069 -10.16348 -10.06286 -9.84907 -9.73380 -9.53502 -8.93199 -8.72416 -8.35806 -7.02078 -6.01815 -3.44740 -0.22683 0.90511 1.36051 1.36580 2.60781 3.08366 3.26599 3.35976 3.44363 3.45542 3.83076 4.44357 4.57463 4.65183 4.76193 4.87235 4.96943 5.08526 5.24062 5.43641 5.49205 5.60204 5.64488 5.74934 5.83015 5.94477 6.00826 6.09146 6.15350 6.33882 6.44903 6.63272 6.80427 7.29183 7.62422 7.85501 8.24146 8.28705 8.81376 9.61108 9.97031 11.13701 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.033331 B = 0.003401 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.863277 B = 8229.761284 C = 8702.853731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.025 3.975 3 Si 0.889 3.111 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.265 4.265 8 H 0.088 0.912 9 N -0.606 5.606 10 C 0.134 3.866 11 C 0.084 3.916 12 N -0.590 5.590 13 C 0.543 3.457 14 O -0.550 6.550 15 C -0.169 4.169 16 C -0.004 4.004 17 C 0.065 3.935 18 N -0.446 5.446 19 C 0.034 3.966 20 C -0.285 4.285 21 S 0.169 5.831 22 C 0.095 3.905 23 C 0.110 3.890 24 H 0.264 0.736 25 H 0.078 0.922 26 H 0.029 0.971 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.132 0.868 30 H 0.158 0.842 31 H 0.175 0.825 32 H 0.180 0.820 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.958 -12.902 -0.759 22.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.175 4.175 3 Si 0.720 3.280 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.194 1.194 7 C -0.393 4.393 8 H 0.106 0.894 9 N -0.330 5.330 10 C 0.008 3.992 11 C -0.040 4.040 12 N -0.321 5.321 13 C 0.332 3.668 14 O -0.430 6.430 15 C -0.196 4.196 16 C -0.027 4.027 17 C -0.206 4.206 18 N -0.160 5.160 19 C -0.122 4.122 20 C -0.425 4.425 21 S 0.426 5.574 22 C -0.029 4.029 23 C -0.016 4.016 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.047 0.953 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.150 0.850 30 H 0.176 0.824 31 H 0.192 0.808 32 H 0.198 0.802 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 18.346 -12.317 -0.997 22.119 hybrid contribution 1.381 0.557 0.106 1.493 sum 19.726 -11.760 -0.892 22.983 Atomic orbital electron populations 1.69770 1.05658 1.26694 1.53143 1.25331 0.95314 0.97772 0.99052 0.86910 0.79810 0.84194 0.77119 1.21461 1.23103 1.19361 1.18924 0.81908 0.94417 1.44059 0.89418 1.44280 1.05841 1.32247 1.50648 1.21304 0.93211 0.92169 0.92560 1.22539 0.97874 0.90739 0.92856 1.47911 1.07153 1.30895 1.46173 1.17987 0.82127 0.85718 0.80935 1.90807 1.73226 1.38372 1.40639 1.23193 0.93946 1.00004 1.02462 1.21412 0.91704 0.94537 0.95086 1.26269 0.92515 0.98784 1.03034 1.67023 1.07332 1.22581 1.19074 1.21752 1.02217 0.89567 0.98630 1.26622 0.97706 1.07567 1.10634 1.83955 1.07544 1.15870 1.50024 1.22276 0.92619 0.90962 0.97007 1.21826 0.96685 0.92288 0.90807 0.92597 0.90340 0.95271 0.90392 0.90761 0.85042 0.82432 0.80769 0.80226 0.90923 0.89466 0.89956 0.94686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.21 13.97 55.49 0.78 -26.43 16 2 C 0.02 0.69 5.33 -17.43 -0.09 0.60 16 3 Si 0.89 22.04 24.29 -169.99 -4.13 17.91 16 4 H -0.29 -6.86 6.66 56.52 0.38 -6.49 16 5 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 6 H -0.27 -6.57 6.20 56.52 0.35 -6.22 16 7 C -0.26 -7.06 10.07 -15.06 -0.15 -7.21 16 8 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 9 N -0.61 -13.66 2.75 -172.04 -0.47 -14.13 16 10 C 0.13 2.38 6.67 -3.60 -0.02 2.35 16 11 C 0.08 1.20 6.48 -3.59 -0.02 1.18 16 12 N -0.59 -9.67 2.95 -174.18 -0.51 -10.19 16 13 C 0.54 8.64 7.61 -13.05 -0.10 8.54 16 14 O -0.55 -10.41 15.66 5.16 0.08 -10.33 16 15 C -0.17 -2.03 8.81 -37.43 -0.33 -2.36 16 16 C 0.00 -0.05 9.74 -37.37 -0.36 -0.41 16 17 C 0.07 0.71 7.41 -14.70 -0.11 0.60 16 18 N -0.45 -5.17 10.67 -11.70 -0.12 -5.29 16 19 C 0.03 0.30 11.24 -19.42 -0.22 0.08 16 20 C -0.28 -2.07 11.08 29.30 0.32 -1.75 16 21 S 0.17 1.38 22.05 -107.50 -2.37 -0.99 16 22 C 0.10 1.74 6.59 -3.60 -0.02 1.71 16 23 C 0.11 2.36 4.30 -3.59 -0.02 2.34 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.08 1.31 7.93 -51.93 -0.41 0.90 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.83 5.40 -51.93 -0.28 0.55 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.13 1.25 5.12 -52.48 -0.27 0.98 16 30 H 0.16 1.98 7.53 -52.49 -0.40 1.59 16 31 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.18 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.09 1.57 7.00 -51.92 -0.36 1.21 16 35 H 0.08 1.90 4.21 -51.93 -0.22 1.68 16 36 H 0.04 0.77 6.90 -51.93 -0.36 0.41 16 LS Contribution 308.64 15.07 4.65 4.65 Total: -1.00 -32.71 308.64 -7.27 -39.98 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -4.04 Total: -0.84 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -1.13 Total: 5.67 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.34 Total: -56.05 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.13 Total: 17.91 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.37 Total: -0.99 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.71 -7.27 -39.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123522783.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.033 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds