Wall clock time and date at job start Tue Mar 31 2020 06:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99818 * 2 1 4 4 H 1.48497 * 109.47309 * 272.70549 * 3 2 1 5 5 H 1.48504 * 109.47405 * 32.70892 * 3 2 1 6 6 H 1.48500 * 109.47174 * 152.70562 * 3 2 1 7 7 C 1.38806 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00128 * 345.42600 * 7 2 1 9 9 N 1.36938 * 119.99953 * 165.42126 * 7 2 1 10 10 C 1.46966 * 120.59642 * 150.51148 * 9 7 2 11 11 C 1.53370 * 108.63562 * 124.75056 * 10 9 7 12 12 N 1.46973 * 108.63370 * 49.42801 * 11 10 9 13 13 C 1.34773 * 120.59120 * 124.74863 * 12 11 10 14 14 O 1.21731 * 119.99943 * 185.17110 * 13 12 11 15 15 C 1.46245 * 120.00533 * 5.17544 * 13 12 11 16 16 C 1.35246 * 120.00309 * 185.64597 * 15 13 12 17 17 C 1.46394 * 119.99988 * 179.97438 * 16 15 13 18 18 N 1.30826 * 125.55167 * 179.97438 * 17 16 15 19 19 C 1.30811 * 115.81751 * 179.97438 * 18 17 16 20 20 C 1.34172 * 115.80203 * 0.02562 * 19 18 17 21 21 S 1.71060 * 109.15400 * 359.74971 * 20 19 18 22 22 C 1.46959 * 118.80955 * 304.77422 * 12 11 10 23 23 C 1.46970 * 120.59712 * 330.49403 * 9 7 2 24 24 H 0.97004 * 119.99835 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.60881 * 5.01352 * 10 9 7 26 26 H 1.08993 * 109.75445 * 244.58525 * 10 9 7 27 27 H 1.09001 * 109.61509 * 169.17221 * 11 10 9 28 28 H 1.09004 * 109.61239 * 289.68970 * 11 10 9 29 29 H 1.08003 * 119.99660 * 5.64409 * 15 13 12 30 30 H 1.07993 * 119.99590 * 0.02562 * 16 15 13 31 31 H 1.08001 * 122.09621 * 180.02562 * 19 18 17 32 32 H 1.08003 * 125.42142 * 180.02562 * 20 19 18 33 33 H 1.09005 * 109.61361 * 295.47869 * 22 12 11 34 34 H 1.09008 * 109.74798 * 175.05220 * 22 12 11 35 35 H 1.09004 * 109.60659 * 354.98759 * 23 9 7 36 36 H 1.08997 * 109.61066 * 115.50102 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4404 2.0795 -1.3985 5 1 1.4774 2.6355 0.7566 6 1 3.5752 1.4244 0.6420 7 6 2.0103 -1.2021 -0.0005 8 1 1.4964 -2.1224 0.2344 9 7 3.3466 -1.2210 -0.2991 10 6 4.2277 -2.2457 0.2787 11 6 4.9486 -2.9726 -0.8633 12 7 5.5273 -1.9689 -1.7676 13 6 6.8425 -1.9876 -2.0613 14 8 7.3284 -1.0976 -2.7349 15 6 7.6860 -3.0769 -1.5708 16 6 9.0236 -3.0377 -1.7674 17 6 9.8679 -4.1280 -1.2759 18 7 11.1676 -4.2014 -1.4059 19 6 11.7324 -5.2638 -0.8926 20 6 10.9036 -6.1377 -0.3012 21 16 9.3003 -5.5510 -0.4077 22 6 4.6463 -0.9443 -2.3452 23 6 3.9254 -0.2173 -1.2032 24 1 -0.4850 0.8401 0.0004 25 1 3.6335 -2.9596 0.8492 26 1 4.9610 -1.7745 0.9330 27 1 5.7423 -3.5983 -0.4553 28 1 4.2368 -3.5907 -1.4105 29 1 7.2408 -3.9128 -1.0516 30 1 9.4687 -2.2017 -2.2862 31 1 12.7988 -5.4272 -0.9417 32 1 11.2019 -7.0620 0.1712 33 1 3.9130 -1.4180 -2.9979 34 1 5.2381 -0.2299 -2.9177 35 1 3.1316 0.4084 -1.6114 36 1 4.6371 0.4008 -0.6561 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123522783.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:36 Heat of formation + Delta-G solvation = 50.149285 kcal Electronic energy + Delta-G solvation = -20575.005785 eV Core-core repulsion = 17380.092415 eV Total energy + Delta-G solvation = -3194.913370 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.21845 -40.55511 -38.72740 -35.72558 -35.14020 -33.48350 -32.40994 -30.82445 -29.07380 -27.07016 -25.39211 -25.06480 -23.48449 -22.08773 -21.07590 -20.05222 -18.89609 -18.77656 -18.12200 -17.19711 -16.93368 -16.55903 -16.26932 -16.00813 -15.59311 -15.52501 -15.16325 -14.74487 -14.53726 -14.35489 -14.24481 -14.01013 -13.60806 -13.36040 -12.80974 -12.50058 -12.40994 -12.21669 -11.97597 -11.82036 -11.62402 -11.56110 -11.08557 -10.87336 -10.79717 -10.52672 -9.93891 -9.40313 -8.84264 -8.16926 -5.54579 -0.99034 0.24294 0.52589 0.73334 1.28128 1.40255 1.46904 1.82062 1.89442 2.27611 2.38473 2.98317 3.09295 3.26891 3.66821 3.86906 4.04918 4.08375 4.17439 4.30624 4.34350 4.40737 4.45153 4.54155 4.56387 4.68324 4.76751 4.89040 4.94467 5.00655 5.18131 5.19955 5.46699 5.85343 6.12193 6.40291 6.63833 6.86336 7.05138 7.56991 7.98423 9.02392 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.033331 B = 0.003401 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.863277 B = 8229.761284 C = 8702.853731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.032 4.032 3 Si 0.944 3.056 4 H -0.277 1.277 5 H -0.313 1.313 6 H -0.263 1.263 7 C -0.243 4.243 8 H 0.065 0.935 9 N -0.621 5.621 10 C 0.126 3.874 11 C 0.092 3.908 12 N -0.596 5.596 13 C 0.543 3.457 14 O -0.588 6.588 15 C -0.176 4.176 16 C 0.013 3.987 17 C 0.023 3.977 18 N -0.473 5.473 19 C 0.012 3.988 20 C -0.267 4.267 21 S 0.219 5.781 22 C 0.105 3.895 23 C 0.109 3.891 24 H 0.262 0.738 25 H 0.087 0.913 26 H 0.036 0.964 27 H 0.124 0.876 28 H 0.080 0.920 29 H 0.161 0.839 30 H 0.140 0.860 31 H 0.196 0.804 32 H 0.214 0.786 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.488 -15.351 -0.097 26.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.227 4.227 3 Si 0.774 3.226 4 H -0.204 1.204 5 H -0.242 1.242 6 H -0.188 1.188 7 C -0.373 4.373 8 H 0.083 0.917 9 N -0.346 5.346 10 C 0.001 3.999 11 C -0.031 4.031 12 N -0.327 5.327 13 C 0.335 3.665 14 O -0.471 6.471 15 C -0.202 4.202 16 C -0.010 4.010 17 C -0.246 4.246 18 N -0.188 5.188 19 C -0.143 4.143 20 C -0.407 4.407 21 S 0.475 5.525 22 C -0.020 4.020 23 C -0.016 4.016 24 H 0.071 0.929 25 H 0.105 0.895 26 H 0.054 0.946 27 H 0.141 0.859 28 H 0.098 0.902 29 H 0.178 0.822 30 H 0.158 0.842 31 H 0.213 0.787 32 H 0.231 0.769 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 20.920 -14.793 -0.338 25.624 hybrid contribution 0.760 1.112 -0.053 1.348 sum 21.680 -13.681 -0.391 25.639 Atomic orbital electron populations 1.69891 1.07157 1.27122 1.56208 1.25899 0.95823 1.00728 1.00259 0.86001 0.78499 0.80684 0.77377 1.20448 1.24188 1.18813 1.18913 0.83745 0.93286 1.41355 0.91695 1.44428 1.05105 1.33492 1.51529 1.21570 0.92904 0.91344 0.94053 1.22571 0.99129 0.90082 0.91290 1.47970 1.07270 1.30833 1.46589 1.18520 0.81925 0.86000 0.80037 1.90788 1.73792 1.40132 1.42345 1.22942 0.93302 0.99755 1.04241 1.21333 0.91863 0.94262 0.93516 1.26098 0.92636 1.00288 1.05586 1.66997 1.08085 1.24107 1.19610 1.22133 1.03570 0.89381 0.99264 1.27128 0.97131 1.07949 1.08536 1.83746 1.07456 1.13388 1.47888 1.21977 0.92809 0.91505 0.95701 1.21744 0.96063 0.92266 0.91562 0.92936 0.89514 0.94579 0.85852 0.90161 0.82181 0.84248 0.78716 0.76916 0.90689 0.89465 0.91944 0.95196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.84 13.97 21.65 0.30 -58.53 16 2 C -0.03 -1.83 5.33 84.86 0.45 -1.38 16 3 Si 0.94 46.38 24.29 68.60 1.67 48.04 16 4 H -0.28 -13.02 6.66 99.48 0.66 -12.36 16 5 H -0.31 -15.71 7.11 99.48 0.71 -15.01 16 6 H -0.26 -12.53 6.20 99.48 0.62 -11.91 16 7 C -0.24 -13.06 10.07 84.03 0.85 -12.21 16 8 H 0.07 3.73 8.06 -2.91 -0.02 3.71 16 9 N -0.62 -27.45 2.75 -698.21 -1.92 -29.37 16 10 C 0.13 4.19 6.67 86.41 0.58 4.76 16 11 C 0.09 2.34 6.48 86.41 0.56 2.90 16 12 N -0.60 -18.35 2.95 -823.18 -2.43 -20.77 16 13 C 0.54 16.42 7.61 86.32 0.66 17.07 16 14 O -0.59 -22.04 15.66 -4.45 -0.07 -22.11 16 15 C -0.18 -3.79 8.81 23.66 0.21 -3.58 16 16 C 0.01 0.30 9.74 23.70 0.23 0.53 16 17 C 0.02 0.46 7.41 86.97 0.64 1.10 16 18 N -0.47 -10.12 10.67 -190.92 -2.04 -12.16 16 19 C 0.01 0.18 11.24 83.92 0.94 1.12 16 20 C -0.27 -2.75 11.08 66.89 0.74 -2.01 16 21 S 0.22 2.70 22.05 -56.49 -1.25 1.45 16 22 C 0.10 3.73 6.59 86.42 0.57 4.30 16 23 C 0.11 4.62 4.30 86.41 0.37 4.99 16 24 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 25 H 0.09 2.71 7.93 -2.38 -0.02 2.69 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.12 2.02 5.40 -2.39 -0.01 2.00 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.16 2.37 5.12 -2.91 -0.01 2.35 16 30 H 0.14 3.53 7.53 -2.91 -0.02 3.51 16 31 H 0.20 1.80 8.06 -2.91 -0.02 1.78 16 32 H 0.21 0.68 8.06 -2.91 -0.02 0.66 16 33 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 34 H 0.09 3.11 7.00 -2.38 -0.02 3.09 16 35 H 0.06 2.88 4.21 -2.38 -0.01 2.87 16 36 H 0.03 1.30 6.90 -2.39 -0.02 1.28 16 Total: -1.00 -72.90 308.64 2.05 -70.85 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 0.98 Total: 5.01 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 6.80 Total: 17.59 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -6.08 Total: -120.83 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.07 Total: -22.11 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.67 Total: 48.04 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.25 Total: 1.45 kcal Total: -72.90 2.05 -70.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123522783.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.000 kcal (2) G-P(sol) polarization free energy of solvation -72.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds