Wall clock time and date at job start Tue Mar 31 2020 06:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00312 * 2 1 4 4 H 1.48501 * 109.47277 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47165 * 300.00122 * 3 2 1 6 6 H 1.48501 * 109.46974 * 59.99896 * 3 2 1 7 7 C 1.38808 * 119.99587 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99996 * 191.94484 * 7 2 1 9 9 N 1.36938 * 120.00488 * 11.94520 * 7 2 1 10 10 C 1.46960 * 120.59735 * 210.34503 * 9 7 2 11 11 C 1.53374 * 108.63505 * 235.20408 * 10 9 7 12 12 N 1.46969 * 108.63636 * 310.57715 * 11 10 9 13 13 C 1.34775 * 120.59462 * 235.20884 * 12 11 10 14 14 O 1.21721 * 119.99837 * 5.74327 * 13 12 11 15 15 C 1.46242 * 119.99915 * 185.74909 * 13 12 11 16 16 C 1.35245 * 119.99904 * 184.22254 * 15 13 12 17 17 C 1.46404 * 120.00133 * 8.22526 * 16 15 13 18 18 N 1.30827 * 125.55572 * 226.40809 * 17 16 15 19 19 C 1.30810 * 115.81676 * 179.97438 * 18 17 16 20 20 C 1.34162 * 115.80545 * 359.97438 * 19 18 17 21 21 S 1.71061 * 109.15314 * 359.73149 * 20 19 18 22 22 C 1.46966 * 118.81138 * 55.47308 * 12 11 10 23 23 C 1.46969 * 120.59057 * 30.32467 * 9 7 2 24 24 H 0.97006 * 119.99588 * 359.97438 * 1 2 3 25 25 H 1.08990 * 109.61104 * 115.45976 * 10 9 7 26 26 H 1.09001 * 109.74992 * 355.02495 * 10 9 7 27 27 H 1.09000 * 109.61523 * 190.82952 * 11 10 9 28 28 H 1.09003 * 109.61177 * 70.31599 * 11 10 9 29 29 H 1.08001 * 120.00489 * 3.94434 * 15 13 12 30 30 H 1.08003 * 120.00010 * 188.22841 * 16 15 13 31 31 H 1.08003 * 122.09780 * 180.02562 * 19 18 17 32 32 H 1.07993 * 125.42292 * 179.97438 * 20 19 18 33 33 H 1.08996 * 109.60700 * 64.27295 * 22 12 11 34 34 H 1.09000 * 109.60947 * 184.77919 * 22 12 11 35 35 H 1.09003 * 109.60362 * 244.53920 * 23 9 7 36 36 H 1.09000 * 109.60916 * 5.04386 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0726 -1.2124 0.1930 9 7 1.3477 -2.3751 -0.2465 10 6 1.8065 -3.6341 0.3571 11 6 2.0414 -4.6568 -0.7615 12 7 0.8586 -4.6791 -1.6335 13 6 0.2065 -5.8335 -1.8756 14 8 0.5307 -6.8500 -1.2897 15 6 -0.8904 -5.8649 -2.8422 16 6 -1.6004 -7.0017 -3.0227 17 6 -1.3939 -8.1433 -2.1297 18 7 -1.2421 -9.3868 -2.5071 19 6 -1.0690 -10.2568 -1.5458 20 6 -1.0695 -9.7586 -0.3001 21 16 -1.3000 -8.0652 -0.3730 22 6 0.4031 -3.4211 -2.2415 23 6 0.1649 -2.3974 -1.1185 24 1 -0.4850 0.8401 0.0004 25 1 1.0466 -4.0095 1.0423 26 1 2.7368 -3.4650 0.8994 27 1 2.1947 -5.6449 -0.3275 28 1 2.9182 -4.3694 -1.3417 29 1 -1.1366 -4.9789 -3.4087 30 1 -2.3196 -7.0675 -3.8257 31 1 -0.9333 -11.3101 -1.7426 32 1 -0.9406 -10.3344 0.6044 33 1 1.1660 -3.0478 -2.9247 34 1 -0.5259 -3.5929 -2.7852 35 1 -0.7119 -2.6848 -0.5382 36 1 0.0116 -1.4094 -1.5525 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123522784.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:40 Heat of formation + Delta-G solvation = 78.675884 kcal Electronic energy + Delta-G solvation = -21132.471926 eV Core-core repulsion = 17938.795563 eV Total energy + Delta-G solvation = -3193.676364 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.89075 -39.13713 -36.96353 -33.95850 -33.73278 -31.46289 -30.23436 -29.52044 -27.20937 -25.54326 -23.91430 -23.15912 -22.11160 -20.42148 -19.80569 -18.69617 -17.71142 -17.07007 -16.30383 -15.77832 -15.08354 -14.83675 -14.74081 -14.54427 -13.78308 -13.69819 -13.62561 -13.33893 -13.25924 -13.01431 -12.64699 -12.38171 -11.62383 -11.34855 -11.15665 -10.92307 -10.77075 -10.54894 -10.28237 -10.19588 -10.12806 -9.93815 -9.77205 -9.33937 -9.15333 -8.64662 -8.27268 -7.79365 -6.73350 -5.90427 -3.39109 0.35978 1.46047 1.86341 2.06466 3.04253 3.29534 3.37520 3.38989 3.41930 3.51006 4.28147 4.39288 4.76578 5.08013 5.24428 5.26491 5.29188 5.42360 5.63551 5.71669 5.79780 5.81555 5.95919 6.00591 6.10482 6.17746 6.29158 6.35829 6.40344 6.74133 6.87404 7.16467 7.43958 7.66792 7.83287 7.86935 8.32396 8.44806 9.07605 9.68385 10.25797 11.16740 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.038781 B = 0.003700 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.836228 B = 7566.550321 C = 7772.694152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.004 3.996 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.132 3.868 11 C 0.095 3.905 12 N -0.582 5.582 13 C 0.524 3.476 14 O -0.549 6.549 15 C -0.178 4.178 16 C -0.005 4.005 17 C 0.047 3.953 18 N -0.457 5.457 19 C 0.019 3.981 20 C -0.315 4.315 21 S 0.273 5.727 22 C 0.074 3.926 23 C 0.157 3.843 24 H 0.255 0.745 25 H 0.024 0.976 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.149 0.851 30 H 0.152 0.848 31 H 0.163 0.837 32 H 0.170 0.830 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.024 0.976 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.984 -12.863 -4.225 14.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.005 3.995 11 C -0.029 4.029 12 N -0.312 5.312 13 C 0.313 3.687 14 O -0.432 6.432 15 C -0.204 4.204 16 C -0.028 4.028 17 C -0.224 4.224 18 N -0.172 5.172 19 C -0.139 4.139 20 C -0.457 4.457 21 S 0.533 5.467 22 C -0.050 4.050 23 C 0.031 3.969 24 H 0.065 0.935 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.166 0.834 30 H 0.169 0.831 31 H 0.180 0.820 32 H 0.187 0.813 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.043 0.957 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.972 -12.528 -3.656 13.642 hybrid contribution 0.655 -0.052 -0.201 0.687 sum -3.317 -12.581 -3.857 13.570 Atomic orbital electron populations 1.69956 1.05282 1.25605 1.54057 1.25149 0.95434 0.98521 1.00317 0.86159 0.79301 0.83574 0.77349 1.20201 1.21464 1.21599 1.19259 0.91283 0.83879 1.44003 0.91486 1.43976 1.32188 1.03066 1.52188 1.21293 0.98541 0.87080 0.92598 1.22238 0.86412 1.01061 0.93216 1.48069 1.28970 1.07578 1.46612 1.18515 0.84065 0.83476 0.82606 1.90876 1.67422 1.32896 1.51996 1.23452 0.96775 0.99019 1.01109 1.21430 0.97656 0.88656 0.95081 1.25938 1.06575 0.94433 0.95489 1.66996 1.15125 0.99783 1.35272 1.21401 1.04895 1.00517 0.87109 1.26664 1.14291 1.01317 1.03400 1.83748 1.57806 1.00249 1.04888 1.22942 0.99012 0.84754 0.98266 1.21318 0.88734 0.97711 0.89171 0.93468 0.95786 0.91547 0.89863 0.91876 0.83394 0.83101 0.81992 0.81292 0.91633 0.90725 0.95748 0.87778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.69 11.01 55.49 0.61 -24.08 16 2 C 0.00 0.12 5.03 -17.43 -0.09 0.03 16 3 Si 0.91 20.64 29.57 -169.99 -5.03 15.62 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.60 9.59 -15.06 -0.14 -6.74 16 8 H 0.07 1.71 7.86 -52.48 -0.41 1.30 16 9 N -0.59 -13.95 2.96 -171.77 -0.51 -14.45 16 10 C 0.13 2.67 6.67 -3.60 -0.02 2.65 16 11 C 0.09 1.68 6.60 -3.59 -0.02 1.66 16 12 N -0.58 -10.04 2.94 -173.92 -0.51 -10.55 16 13 C 0.52 8.65 7.29 -13.05 -0.10 8.56 16 14 O -0.55 -10.06 10.83 5.17 0.06 -10.01 16 15 C -0.18 -2.31 9.31 -37.43 -0.35 -2.66 16 16 C -0.01 -0.06 10.24 -37.36 -0.38 -0.45 16 17 C 0.05 0.70 5.87 -14.70 -0.09 0.61 16 18 N -0.46 -7.11 10.67 -11.70 -0.12 -7.23 16 19 C 0.02 0.26 11.24 -19.42 -0.22 0.04 16 20 C -0.32 -4.05 11.08 29.30 0.32 -3.73 16 21 S 0.27 3.90 19.46 -107.50 -2.09 1.81 16 22 C 0.07 1.25 6.50 -3.37 -0.02 1.23 16 23 C 0.16 3.41 5.49 -3.37 -0.02 3.39 16 24 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 1.29 7.94 -51.93 -0.41 0.88 16 27 H 0.08 1.44 6.99 -51.93 -0.36 1.08 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.15 1.51 5.99 -52.49 -0.31 1.20 16 30 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.16 1.75 8.06 -52.48 -0.42 1.32 16 32 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.01 5.39 -51.93 -0.28 0.73 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.10 2.50 5.97 -51.93 -0.31 2.19 16 LS Contribution 308.86 15.07 4.65 4.65 Total: -1.00 -30.75 308.86 -8.25 -39.00 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -4.19 Total: 0.65 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -1.13 Total: 4.59 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.53 Total: -56.32 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.06 Total: -10.01 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.62 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -2.09 Total: 1.81 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.75 -8.25 -39.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123522784.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.680 kcal (2) G-P(sol) polarization free energy of solvation -30.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds