Wall clock time and date at job start Tue Mar 31 2020 06:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00312 * 2 1 4 4 H 1.48501 * 109.47277 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47165 * 300.00122 * 3 2 1 6 6 H 1.48501 * 109.46974 * 59.99896 * 3 2 1 7 7 C 1.38808 * 119.99587 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99996 * 191.94484 * 7 2 1 9 9 N 1.36938 * 120.00488 * 11.94520 * 7 2 1 10 10 C 1.46960 * 120.59735 * 210.34503 * 9 7 2 11 11 C 1.53374 * 108.63505 * 235.20408 * 10 9 7 12 12 N 1.46969 * 108.63636 * 310.57715 * 11 10 9 13 13 C 1.34775 * 120.59462 * 235.20884 * 12 11 10 14 14 O 1.21721 * 119.99837 * 5.74327 * 13 12 11 15 15 C 1.46242 * 119.99915 * 185.74909 * 13 12 11 16 16 C 1.35245 * 119.99904 * 184.22254 * 15 13 12 17 17 C 1.46404 * 120.00133 * 8.22526 * 16 15 13 18 18 N 1.30827 * 125.55572 * 226.40809 * 17 16 15 19 19 C 1.30810 * 115.81676 * 179.97438 * 18 17 16 20 20 C 1.34162 * 115.80545 * 359.97438 * 19 18 17 21 21 S 1.71061 * 109.15314 * 359.73149 * 20 19 18 22 22 C 1.46966 * 118.81138 * 55.47308 * 12 11 10 23 23 C 1.46969 * 120.59057 * 30.32467 * 9 7 2 24 24 H 0.97006 * 119.99588 * 359.97438 * 1 2 3 25 25 H 1.08990 * 109.61104 * 115.45976 * 10 9 7 26 26 H 1.09001 * 109.74992 * 355.02495 * 10 9 7 27 27 H 1.09000 * 109.61523 * 190.82952 * 11 10 9 28 28 H 1.09003 * 109.61177 * 70.31599 * 11 10 9 29 29 H 1.08001 * 120.00489 * 3.94434 * 15 13 12 30 30 H 1.08003 * 120.00010 * 188.22841 * 16 15 13 31 31 H 1.08003 * 122.09780 * 180.02562 * 19 18 17 32 32 H 1.07993 * 125.42292 * 179.97438 * 20 19 18 33 33 H 1.08996 * 109.60700 * 64.27295 * 22 12 11 34 34 H 1.09000 * 109.60947 * 184.77919 * 22 12 11 35 35 H 1.09003 * 109.60362 * 244.53920 * 23 9 7 36 36 H 1.09000 * 109.60916 * 5.04386 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0726 -1.2124 0.1930 9 7 1.3477 -2.3751 -0.2465 10 6 1.8065 -3.6341 0.3571 11 6 2.0414 -4.6568 -0.7615 12 7 0.8586 -4.6791 -1.6335 13 6 0.2065 -5.8335 -1.8756 14 8 0.5307 -6.8500 -1.2897 15 6 -0.8904 -5.8649 -2.8422 16 6 -1.6004 -7.0017 -3.0227 17 6 -1.3939 -8.1433 -2.1297 18 7 -1.2421 -9.3868 -2.5071 19 6 -1.0690 -10.2568 -1.5458 20 6 -1.0695 -9.7586 -0.3001 21 16 -1.3000 -8.0652 -0.3730 22 6 0.4031 -3.4211 -2.2415 23 6 0.1649 -2.3974 -1.1185 24 1 -0.4850 0.8401 0.0004 25 1 1.0466 -4.0095 1.0423 26 1 2.7368 -3.4650 0.8994 27 1 2.1947 -5.6449 -0.3275 28 1 2.9182 -4.3694 -1.3417 29 1 -1.1366 -4.9789 -3.4087 30 1 -2.3196 -7.0675 -3.8257 31 1 -0.9333 -11.3101 -1.7426 32 1 -0.9406 -10.3344 0.6044 33 1 1.1660 -3.0478 -2.9247 34 1 -0.5259 -3.5929 -2.7852 35 1 -0.7119 -2.6848 -0.5382 36 1 0.0116 -1.4094 -1.5525 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123522784.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:39 Heat of formation + Delta-G solvation = 59.417302 kcal Electronic energy + Delta-G solvation = -21133.307041 eV Core-core repulsion = 17938.795563 eV Total energy + Delta-G solvation = -3194.511479 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.17120 -40.24207 -38.49681 -35.61612 -34.80390 -33.20553 -31.82419 -30.61738 -28.82026 -26.76756 -25.49595 -24.62926 -23.48400 -21.79811 -20.96818 -20.05634 -19.07916 -18.25088 -17.91588 -17.06307 -16.66136 -16.27507 -15.99921 -15.73311 -15.39839 -15.21506 -15.00592 -14.78110 -14.55779 -14.18979 -13.93858 -13.57658 -13.26982 -13.02237 -12.70797 -12.43749 -12.24077 -12.18568 -11.99231 -11.89387 -11.65623 -11.16089 -11.09088 -10.61543 -10.46640 -10.27871 -9.63869 -8.94364 -8.58757 -7.86223 -5.38671 -0.68795 0.42385 0.81984 1.00759 1.48884 1.51881 1.61150 1.95374 2.10460 2.33107 2.52177 3.27792 3.30020 3.60016 3.67178 4.14713 4.26663 4.29041 4.36326 4.39471 4.53318 4.59613 4.62794 4.70269 4.77715 4.84050 4.98672 5.06027 5.13403 5.27241 5.37480 5.60374 5.63434 5.70454 6.39401 6.51986 6.79845 7.13871 7.16624 7.80224 8.33749 9.17824 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.038781 B = 0.003700 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.836228 B = 7566.550321 C = 7772.694152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.043 4.043 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.295 1.295 7 C -0.265 4.265 8 H 0.067 0.933 9 N -0.610 5.610 10 C 0.133 3.867 11 C 0.107 3.893 12 N -0.591 5.591 13 C 0.519 3.481 14 O -0.569 6.569 15 C -0.185 4.185 16 C 0.005 3.995 17 C 0.032 3.968 18 N -0.477 5.477 19 C 0.004 3.996 20 C -0.307 4.307 21 S 0.241 5.759 22 C 0.091 3.909 23 C 0.162 3.838 24 H 0.252 0.748 25 H 0.010 0.990 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.180 0.820 30 H 0.189 0.811 31 H 0.188 0.812 32 H 0.196 0.804 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.000 1.000 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.990 -13.748 -5.532 15.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.239 4.239 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.222 1.222 7 C -0.395 4.395 8 H 0.084 0.916 9 N -0.333 5.333 10 C 0.007 3.993 11 C -0.017 4.017 12 N -0.321 5.321 13 C 0.310 3.690 14 O -0.453 6.453 15 C -0.210 4.210 16 C -0.018 4.018 17 C -0.239 4.239 18 N -0.192 5.192 19 C -0.153 4.153 20 C -0.448 4.448 21 S 0.501 5.499 22 C -0.033 4.033 23 C 0.036 3.964 24 H 0.061 0.939 25 H 0.028 0.972 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.197 0.803 30 H 0.206 0.794 31 H 0.205 0.795 32 H 0.213 0.787 33 H 0.088 0.912 34 H 0.131 0.869 35 H 0.018 0.982 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.973 -13.454 -4.975 14.885 hybrid contribution 0.639 0.079 0.287 0.705 sum -3.334 -13.375 -4.688 14.560 Atomic orbital electron populations 1.70106 1.06485 1.25929 1.55303 1.25824 0.96145 1.01291 1.00626 0.85194 0.78505 0.79830 0.76787 1.19345 1.21305 1.22237 1.19536 0.91531 0.85012 1.43375 0.91581 1.44239 1.32482 1.03432 1.53163 1.21334 0.98035 0.86574 0.93386 1.21987 0.87137 1.00073 0.92542 1.48104 1.29020 1.08042 1.46941 1.19124 0.84430 0.82714 0.82695 1.90879 1.68048 1.33514 1.52849 1.23521 0.96085 1.00545 1.00877 1.21895 0.97633 0.87328 0.94901 1.26400 1.06620 0.95079 0.95766 1.67028 1.15774 1.00268 1.36136 1.21865 1.04736 1.01594 0.87097 1.26946 1.13124 1.00415 1.04330 1.83857 1.58484 1.01975 1.05612 1.22717 1.01063 0.83248 0.96279 1.21155 0.87378 0.97934 0.89963 0.93870 0.97244 0.91237 0.89514 0.91358 0.80314 0.79363 0.79535 0.78726 0.91175 0.86867 0.98153 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.79 11.01 21.65 0.24 -51.55 16 2 C -0.04 -2.27 5.03 84.86 0.43 -1.85 16 3 Si 0.97 42.65 29.57 68.60 2.03 44.68 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.30 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.26 -13.79 9.59 84.03 0.81 -12.99 16 8 H 0.07 3.38 7.86 -2.91 -0.02 3.36 16 9 N -0.61 -29.02 2.96 -697.36 -2.07 -31.08 16 10 C 0.13 5.43 6.67 86.42 0.58 6.01 16 11 C 0.11 3.72 6.60 86.42 0.57 4.29 16 12 N -0.59 -19.55 2.94 -822.36 -2.42 -21.97 16 13 C 0.52 16.25 7.29 86.32 0.63 16.88 16 14 O -0.57 -20.23 10.83 -4.41 -0.05 -20.28 16 15 C -0.19 -4.27 9.31 23.66 0.22 -4.05 16 16 C 0.01 0.11 10.24 23.71 0.24 0.35 16 17 C 0.03 0.91 5.87 86.97 0.51 1.42 16 18 N -0.48 -13.98 10.67 -190.92 -2.04 -16.02 16 19 C 0.00 0.11 11.24 83.91 0.94 1.05 16 20 C -0.31 -7.39 11.08 66.89 0.74 -6.65 16 21 S 0.24 6.68 19.46 -56.49 -1.10 5.58 16 22 C 0.09 2.90 6.50 86.56 0.56 3.46 16 23 C 0.16 7.07 5.49 86.56 0.48 7.54 16 24 H 0.25 13.55 8.31 -92.70 -0.77 12.78 16 25 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.07 2.72 7.94 -2.39 -0.02 2.70 16 27 H 0.09 2.96 6.99 -2.39 -0.02 2.94 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.18 2.90 5.99 -2.91 -0.02 2.88 16 30 H 0.19 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.19 3.59 8.06 -2.91 -0.02 3.56 16 32 H 0.20 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.11 2.72 5.39 -2.39 -0.01 2.71 16 35 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.08 3.84 5.97 -2.39 -0.01 3.83 16 Total: -1.00 -66.77 308.86 2.40 -64.37 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.10 Total: 10.79 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 6.70 Total: 15.48 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -6.28 Total: -120.61 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.05 Total: -20.28 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 6.68 SS G_CDS: -1.10 Total: 5.58 kcal Total: -66.77 2.40 -64.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123522784.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.785 kcal (2) G-P(sol) polarization free energy of solvation -66.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds