Wall clock time and date at job start Tue Mar 31 2020 06:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 7 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 7 13 13 C 1.46921 * 120.63059 * 359.72315 * 12 10 9 14 14 C 1.53629 * 108.54224 * 126.36706 * 13 12 10 15 15 C 1.53041 * 109.24036 * 54.85265 * 14 13 12 16 16 C 1.50702 * 109.45892 * 178.48885 * 15 14 13 17 17 O 1.20766 * 119.99454 * 95.07145 * 16 15 14 18 18 C 1.50697 * 120.00434 * 275.07218 * 16 15 14 19 19 F 1.39899 * 109.47299 * 239.99926 * 18 16 15 20 20 F 1.39900 * 109.46900 * 359.97438 * 18 16 15 21 21 F 1.39896 * 109.47327 * 119.99636 * 18 16 15 22 22 C 1.53038 * 109.54157 * 298.51402 * 15 14 13 23 23 C 1.46926 * 120.62707 * 180.02562 * 12 10 9 24 24 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 26 26 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 27 27 H 1.08998 * 109.58542 * 246.19788 * 13 12 10 28 28 H 1.08999 * 109.58977 * 6.62636 * 13 12 10 29 29 H 1.08999 * 109.63120 * 294.86485 * 14 13 12 30 30 H 1.09000 * 109.43244 * 174.72381 * 14 13 12 31 31 H 1.08996 * 109.45734 * 58.53711 * 15 14 13 32 32 H 1.09002 * 109.49670 * 301.41329 * 22 15 14 33 33 H 1.09002 * 109.52529 * 181.33535 * 22 15 14 34 34 H 1.09003 * 109.58886 * 353.37482 * 23 12 10 35 35 H 1.08992 * 109.58644 * 113.65764 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 8 3.4228 -3.4229 -0.0001 12 7 1.7811 -4.9153 0.0000 13 6 0.3397 -5.1997 0.0067 14 6 0.0218 -6.1400 -1.1659 15 6 0.9080 -7.3840 -1.0693 16 6 0.5742 -8.3269 -2.1965 17 8 1.2198 -8.3009 -3.2167 18 6 -0.5652 -9.3023 -2.0505 19 9 -0.0801 -10.6084 -2.1769 20 9 -1.1559 -9.1445 -0.7922 21 9 -1.5171 -9.0600 -3.0466 22 6 2.3791 -6.9733 -1.1668 23 6 2.7236 -6.0425 0.0006 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 0.0661 -5.6782 0.9470 28 1 -0.2168 -4.2695 -0.1079 29 1 0.2149 -5.6280 -2.1086 30 1 -1.0264 -6.4355 -1.1198 31 1 0.7324 -7.8817 -0.1157 32 1 2.5500 -6.4535 -2.1096 33 1 3.0090 -7.8617 -1.1218 34 1 3.7406 -5.6685 -0.1180 35 1 2.6418 -6.5867 0.9413 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143197593.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:22 Heat of formation + Delta-G solvation = -226.763296 kcal Electronic energy + Delta-G solvation = -23937.478214 eV Core-core repulsion = 19713.654651 eV Total energy + Delta-G solvation = -4223.823563 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.65810 -48.17164 -48.15726 -40.70425 -39.22103 -36.80281 -33.11546 -32.92755 -31.36297 -29.07974 -28.65358 -25.74386 -23.90321 -23.02325 -21.98661 -20.51819 -19.09159 -19.03047 -18.60629 -18.45348 -16.73298 -16.13789 -15.69849 -15.36514 -15.27433 -15.00855 -14.87265 -14.77683 -14.54548 -14.40790 -14.30368 -14.26753 -14.20347 -13.87059 -13.64600 -12.83201 -12.80159 -12.32047 -12.17430 -12.05505 -11.38806 -11.22600 -11.03120 -10.87453 -10.78228 -10.64518 -10.33331 -9.97737 -9.25362 -8.70176 -8.46965 -8.24675 -6.09259 -4.08727 0.67519 1.78655 2.94145 3.33253 3.38623 3.41511 3.43512 3.52224 3.59810 3.71236 4.01337 4.40821 4.41674 4.45872 4.87633 4.95618 5.22279 5.24304 5.29321 5.47706 5.52909 5.55353 5.77623 5.85270 5.93211 6.06373 6.22599 6.29700 6.91972 7.12812 7.25917 7.87865 7.93875 8.31173 9.01709 9.12106 9.56677 11.03051 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.031050 B = 0.003446 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.556210 B = 8123.738365 C = 8519.000487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.056 3.944 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.075 0.925 9 C 0.007 3.993 10 C 0.518 3.482 11 O -0.542 6.542 12 N -0.632 5.632 13 C 0.116 3.884 14 C -0.126 4.126 15 C -0.124 4.124 16 C 0.335 3.665 17 O -0.373 6.373 18 C 0.418 3.582 19 F -0.168 7.168 20 F -0.165 7.165 21 F -0.166 7.166 22 C -0.122 4.122 23 C 0.113 3.887 24 H 0.262 0.738 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.848 -20.068 -1.427 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.093 0.907 9 C -0.032 4.032 10 C 0.310 3.690 11 O -0.417 6.417 12 N -0.369 5.369 13 C -0.008 4.008 14 C -0.164 4.164 15 C -0.143 4.143 16 C 0.201 3.799 17 O -0.238 6.238 18 C 0.363 3.637 19 F -0.149 7.149 20 F -0.146 7.146 21 F -0.147 7.147 22 C -0.160 4.160 23 C -0.010 4.010 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.124 0.876 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.134 0.866 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.987 -19.797 -2.003 20.121 hybrid contribution -0.134 0.378 -0.052 0.404 sum -3.121 -19.420 -2.055 19.776 Atomic orbital electron populations 1.69944 1.06022 1.26972 1.51102 1.24991 0.94906 0.99462 0.95127 0.86436 0.79881 0.82642 0.78195 1.20606 1.21247 1.19659 1.21177 0.94277 0.89141 1.50214 0.90721 1.19262 0.94157 0.90498 0.99306 1.22092 0.91015 0.83061 0.72799 1.90533 1.18100 1.83959 1.49138 1.48444 1.05976 1.06078 1.76433 1.21703 0.82152 1.00399 0.96545 1.22049 0.98780 0.93764 1.01835 1.21819 0.99424 0.95885 0.97196 1.25694 0.81482 0.82217 0.90548 1.90540 1.43601 1.61109 1.28530 1.21275 0.85239 0.82326 0.74902 1.93253 1.87735 1.38384 1.95574 1.93238 1.85341 1.95295 1.40750 1.93266 1.66128 1.94089 1.61221 1.21918 0.92205 1.00431 1.01440 1.21397 0.95895 0.87372 0.96382 0.92870 0.93418 0.93382 0.91320 0.87565 0.90050 0.89841 0.86649 0.90026 0.90458 0.88556 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.73 13.29 55.43 0.74 -25.00 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.48 8.92 -34.44 -0.31 -14.79 16 8 H 0.07 2.23 6.75 -52.49 -0.35 1.87 16 9 C 0.01 0.17 3.80 -29.03 -0.11 0.06 16 10 C 0.52 11.34 7.69 -10.98 -0.08 11.26 16 11 O -0.54 -13.70 14.87 5.56 0.08 -13.62 16 12 N -0.63 -10.19 2.97 -172.48 -0.51 -10.71 16 13 C 0.12 1.44 6.37 -3.49 -0.02 1.42 16 14 C -0.13 -1.27 5.36 -26.38 -0.14 -1.41 16 15 C -0.12 -1.14 1.97 -91.73 -0.18 -1.32 16 16 C 0.33 3.29 5.81 -29.04 -0.17 3.12 16 17 O -0.37 -4.62 16.87 5.99 0.10 -4.52 16 18 C 0.42 3.84 3.51 36.00 0.13 3.97 16 19 F -0.17 -1.64 17.30 2.25 0.04 -1.60 16 20 F -0.16 -1.36 16.14 2.25 0.04 -1.32 16 21 F -0.17 -1.69 17.30 2.25 0.04 -1.65 16 22 C -0.12 -1.31 4.87 -26.59 -0.13 -1.44 16 23 C 0.11 1.48 6.43 -3.69 -0.02 1.46 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.05 1.17 7.70 -51.93 -0.40 0.77 16 26 H 0.05 1.18 7.93 -51.93 -0.41 0.76 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.11 1.49 5.93 -51.93 -0.31 1.18 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.12 0.81 7.49 -51.93 -0.39 0.42 16 32 H 0.08 1.04 7.92 -51.93 -0.41 0.63 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 1.47 7.01 -51.93 -0.36 1.10 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 309.54 15.07 4.66 4.66 Total: -1.00 -32.11 309.54 -4.86 -36.97 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -3.89 Total: -3.81 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.14 Total: 3.79 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.22 Total: -35.70 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.18 Total: -18.13 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.11 Total: -4.57 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.11 -4.86 -36.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197593.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.791 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds