Wall clock time and date at job start Tue Mar 31 2020 06:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 7 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 7 13 13 C 1.46921 * 120.63059 * 359.72315 * 12 10 9 14 14 C 1.53629 * 108.54224 * 126.36706 * 13 12 10 15 15 C 1.53041 * 109.24036 * 54.85265 * 14 13 12 16 16 C 1.50702 * 109.45892 * 178.48885 * 15 14 13 17 17 O 1.20766 * 119.99454 * 95.07145 * 16 15 14 18 18 C 1.50697 * 120.00434 * 275.07218 * 16 15 14 19 19 F 1.39899 * 109.47299 * 239.99926 * 18 16 15 20 20 F 1.39900 * 109.46900 * 359.97438 * 18 16 15 21 21 F 1.39896 * 109.47327 * 119.99636 * 18 16 15 22 22 C 1.53038 * 109.54157 * 298.51402 * 15 14 13 23 23 C 1.46926 * 120.62707 * 180.02562 * 12 10 9 24 24 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 26 26 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 27 27 H 1.08998 * 109.58542 * 246.19788 * 13 12 10 28 28 H 1.08999 * 109.58977 * 6.62636 * 13 12 10 29 29 H 1.08999 * 109.63120 * 294.86485 * 14 13 12 30 30 H 1.09000 * 109.43244 * 174.72381 * 14 13 12 31 31 H 1.08996 * 109.45734 * 58.53711 * 15 14 13 32 32 H 1.09002 * 109.49670 * 301.41329 * 22 15 14 33 33 H 1.09002 * 109.52529 * 181.33535 * 22 15 14 34 34 H 1.09003 * 109.58886 * 353.37482 * 23 12 10 35 35 H 1.08992 * 109.58644 * 113.65764 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 8 3.4228 -3.4229 -0.0001 12 7 1.7811 -4.9153 0.0000 13 6 0.3397 -5.1997 0.0067 14 6 0.0218 -6.1400 -1.1659 15 6 0.9080 -7.3840 -1.0693 16 6 0.5742 -8.3269 -2.1965 17 8 1.2198 -8.3009 -3.2167 18 6 -0.5652 -9.3023 -2.0505 19 9 -0.0801 -10.6084 -2.1769 20 9 -1.1559 -9.1445 -0.7922 21 9 -1.5171 -9.0600 -3.0466 22 6 2.3791 -6.9733 -1.1668 23 6 2.7236 -6.0425 0.0006 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 0.0661 -5.6782 0.9470 28 1 -0.2168 -4.2695 -0.1079 29 1 0.2149 -5.6280 -2.1086 30 1 -1.0264 -6.4355 -1.1198 31 1 0.7324 -7.8817 -0.1157 32 1 2.5500 -6.4535 -2.1096 33 1 3.0090 -7.8617 -1.1218 34 1 3.7406 -5.6685 -0.1180 35 1 2.6418 -6.5867 0.9413 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143197593.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:22 Heat of formation + Delta-G solvation = -246.974018 kcal Electronic energy + Delta-G solvation = -23938.354617 eV Core-core repulsion = 19713.654651 eV Total energy + Delta-G solvation = -4224.699966 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.38668 -48.91927 -48.86102 -41.65107 -40.59451 -38.12921 -35.13598 -34.21894 -32.47100 -30.74342 -29.72173 -26.97068 -25.51487 -24.19257 -23.02376 -21.50833 -20.07117 -19.80073 -19.54911 -19.36052 -18.60411 -17.67995 -16.99586 -16.67744 -16.33560 -16.18574 -16.11336 -15.72754 -15.58424 -15.27593 -15.16410 -14.98609 -14.95639 -14.87123 -14.79344 -14.39279 -14.10687 -13.98148 -13.34547 -13.22717 -13.12130 -12.75938 -12.58057 -12.28286 -12.04932 -11.91042 -11.81170 -11.35003 -11.19322 -10.61363 -10.44925 -9.57586 -8.24496 -6.31106 -0.11776 1.01506 1.40871 1.41039 1.53688 1.87140 2.15975 2.22763 2.45135 2.69086 2.97131 3.11024 3.21234 3.56607 3.60762 3.95777 4.02387 4.22260 4.30837 4.42286 4.62636 4.65146 4.72578 4.85784 4.94852 5.02118 5.07615 5.16085 5.28306 5.49787 5.65808 5.79616 6.07259 6.54517 6.81913 7.35119 7.47952 8.87314 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.031050 B = 0.003446 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.556210 B = 8123.738365 C = 8519.000487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.014 3.986 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.052 0.948 9 C 0.013 3.987 10 C 0.517 3.483 11 O -0.587 6.587 12 N -0.622 5.622 13 C 0.108 3.892 14 C -0.121 4.121 15 C -0.120 4.120 16 C 0.347 3.653 17 O -0.402 6.402 18 C 0.426 3.574 19 F -0.170 7.170 20 F -0.154 7.154 21 F -0.172 7.172 22 C -0.115 4.115 23 C 0.110 3.890 24 H 0.267 0.733 25 H 0.041 0.959 26 H 0.045 0.955 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.114 0.886 31 H 0.152 0.848 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.762 -21.538 -0.705 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.070 0.930 9 C -0.026 4.026 10 C 0.308 3.692 11 O -0.467 6.467 12 N -0.357 5.357 13 C -0.014 4.014 14 C -0.159 4.159 15 C -0.138 4.138 16 C 0.214 3.786 17 O -0.268 6.268 18 C 0.371 3.629 19 F -0.151 7.151 20 F -0.135 7.135 21 F -0.153 7.153 22 C -0.153 4.153 23 C -0.012 4.012 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.123 0.877 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.133 0.867 31 H 0.170 0.830 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.089 0.911 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.952 -21.321 -1.280 21.722 hybrid contribution 0.098 0.760 -0.267 0.811 sum -3.854 -20.561 -1.547 20.977 Atomic orbital electron populations 1.70007 1.06956 1.28048 1.51113 1.25717 0.95826 1.02479 0.94489 0.85524 0.78573 0.78931 0.78489 1.19883 1.19754 1.20009 1.21400 0.93623 0.91522 1.51226 0.92998 1.19051 0.94209 0.90661 0.98674 1.21554 0.89717 0.84693 0.73268 1.90503 1.19383 1.85093 1.51734 1.48352 1.08313 1.04942 1.74045 1.21988 0.79416 1.00571 0.99402 1.21991 1.00842 0.93443 0.99659 1.21845 0.97810 0.95520 0.98667 1.25755 0.81030 0.81864 0.89930 1.90552 1.44699 1.61992 1.29576 1.21045 0.84799 0.81962 0.75108 1.93256 1.87770 1.38502 1.95614 1.93263 1.85122 1.95211 1.39940 1.93261 1.66293 1.94115 1.61642 1.21823 0.94097 1.00468 0.98943 1.21624 0.93853 0.86557 0.99136 0.92381 0.94106 0.93699 0.87682 0.89485 0.92071 0.86748 0.83017 0.92629 0.87917 0.91135 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.87 13.29 21.45 0.28 -52.59 16 2 C 0.01 0.78 5.46 84.65 0.46 1.24 16 3 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.54 -31.61 8.92 25.60 0.23 -31.38 16 8 H 0.05 3.23 6.75 -2.91 -0.02 3.21 16 9 C 0.01 0.67 3.80 29.10 0.11 0.78 16 10 C 0.52 23.22 7.69 87.66 0.67 23.89 16 11 O -0.59 -30.90 14.87 -3.03 -0.05 -30.95 16 12 N -0.62 -19.61 2.97 -818.00 -2.43 -22.04 16 13 C 0.11 2.48 6.37 86.51 0.55 3.03 16 14 C -0.12 -2.15 5.36 30.82 0.17 -1.98 16 15 C -0.12 -1.80 1.97 -11.51 -0.02 -1.83 16 16 C 0.35 5.92 5.81 29.10 0.17 6.09 16 17 O -0.40 -9.38 16.87 -1.47 -0.02 -9.40 16 18 C 0.43 6.60 3.51 71.23 0.25 6.85 16 19 F -0.17 -2.87 17.30 44.97 0.78 -2.10 16 20 F -0.15 -1.93 16.14 44.97 0.73 -1.20 16 21 F -0.17 -3.12 17.30 44.97 0.78 -2.34 16 22 C -0.12 -2.24 4.87 30.68 0.15 -2.09 16 23 C 0.11 2.72 6.43 86.38 0.56 3.27 16 24 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 25 H 0.04 2.08 7.70 -2.39 -0.02 2.06 16 26 H 0.05 2.25 7.93 -2.39 -0.02 2.23 16 27 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.09 2.38 5.93 -2.39 -0.01 2.37 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.15 1.29 7.49 -2.39 -0.02 1.27 16 32 H 0.05 1.40 7.92 -2.39 -0.02 1.38 16 33 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 2.15 7.01 -2.39 -0.02 2.13 16 35 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -71.65 309.54 6.52 -65.13 By element: Atomic # 1 Polarization: -0.57 SS G_CDS: 1.13 Total: 0.56 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 3.29 Total: 7.88 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -2.14 Total: -74.63 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -0.07 Total: -40.35 kcal Atomic # 9 Polarization: -7.92 SS G_CDS: 2.28 Total: -5.64 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -71.65 6.52 -65.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197593.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.840 kcal (2) G-P(sol) polarization free energy of solvation -71.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds