Wall clock time and date at job start Tue Mar 31 2020 06:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00233 * 2 1 4 4 H 1.48496 * 109.47238 * 270.00456 * 3 2 1 5 5 H 1.48499 * 109.46498 * 30.00672 * 3 2 1 6 6 H 1.48498 * 109.46845 * 149.99986 * 3 2 1 7 7 C 1.37881 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00033 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99881 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46761 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46541 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46767 * 179.97438 * 11 10 9 13 13 C 1.40040 * 120.00060 * 179.97438 * 12 11 10 14 14 C 1.38661 * 120.32870 * 0.02562 * 13 12 11 15 15 N 1.32034 * 120.72540 * 179.89408 * 14 13 12 16 16 C 1.32200 * 121.79623 * 0.06216 * 15 14 13 17 17 C 1.39735 * 120.94129 * 0.06247 * 16 15 14 18 18 C 1.39088 * 118.61665 * 359.83487 * 17 16 15 19 19 N 1.39128 * 121.82265 * 179.72536 * 17 16 15 20 20 C 1.33159 * 125.78302 * 22.20116 * 19 17 16 21 21 O 1.21291 * 118.31536 * 179.23407 * 20 19 17 22 22 C 1.50372 * 123.37131 * 359.25830 * 20 19 17 23 23 S 1.76564 * 119.98859 * 180.18027 * 16 15 14 24 24 H 0.97001 * 120.00000 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46690 * 60.00019 * 9 7 2 26 26 H 1.08996 * 109.47227 * 300.00081 * 9 7 2 27 27 H 1.08996 * 109.47431 * 60.00378 * 10 9 7 28 28 H 1.08999 * 109.47005 * 299.99653 * 10 9 7 29 29 H 1.08996 * 109.47097 * 59.99993 * 11 10 9 30 30 H 1.08999 * 109.47040 * 299.99451 * 11 10 9 31 31 H 0.96998 * 120.00140 * 0.02562 * 12 11 10 32 32 H 1.08006 * 119.63616 * 0.17275 * 14 13 12 33 33 H 1.08008 * 120.70743 * 180.15600 * 18 17 16 34 34 H 0.96996 * 117.11142 * 202.22371 * 19 17 16 35 35 H 1.08997 * 109.54396 * 204.97852 * 22 20 19 36 36 H 1.09002 * 109.61796 * 84.74986 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6525 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5515 -2.6366 -0.0009 12 7 6.0398 -4.0178 -0.0002 13 6 7.4166 -4.2738 -0.0006 14 6 8.3237 -3.2250 -0.0011 15 7 9.6235 -3.4574 0.0007 16 6 10.1115 -4.6860 0.0018 17 6 9.2628 -5.7961 -0.0002 18 6 7.8882 -5.5838 0.0001 19 7 9.7564 -7.0969 -0.0048 20 6 10.9684 -7.4712 0.4004 21 8 11.2535 -8.6490 0.3502 22 6 12.0015 -6.5087 0.9176 23 16 11.8585 -4.9417 0.0089 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6804 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.6578 -3.1507 -0.8907 28 1 3.6585 -3.1502 0.8893 29 1 5.9148 -2.1227 0.8890 30 1 5.9148 -2.1229 -0.8910 31 1 5.4095 -4.7551 -0.0002 32 1 7.9631 -2.2070 0.0016 33 1 7.2014 -6.4174 0.0012 34 1 9.1655 -7.7928 -0.3325 35 1 12.9968 -6.9273 0.7686 36 1 11.8362 -6.3305 1.9802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:34 Heat of formation + Delta-G solvation = -2.680647 kcal Electronic energy + Delta-G solvation = -19727.978216 eV Core-core repulsion = 16530.773968 eV Total energy + Delta-G solvation = -3197.204248 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25316 -39.95014 -37.07050 -35.88947 -34.01446 -32.26078 -31.13932 -30.38206 -29.46580 -26.95295 -24.46091 -23.92428 -22.50685 -21.01020 -20.40402 -18.55306 -18.33709 -17.86954 -16.99311 -16.64942 -16.18536 -15.99597 -15.36167 -15.19283 -14.76098 -14.47639 -14.33097 -14.03514 -13.67576 -13.41581 -12.79781 -12.72896 -12.52372 -12.08157 -11.65174 -11.56999 -11.30365 -11.20283 -10.84966 -10.55904 -10.17966 -9.98746 -9.89129 -9.78473 -9.34147 -9.11478 -8.65031 -8.62634 -7.41621 -6.14856 -4.14600 0.46783 0.82204 1.05430 1.76476 2.12143 2.32301 3.17762 3.23663 3.32082 3.33420 3.43996 3.64262 4.29654 4.35521 4.44323 4.52625 4.55405 4.74870 4.93249 5.10793 5.18558 5.26284 5.38601 5.52762 5.74144 5.90123 6.00475 6.24284 6.26634 6.57261 6.61076 6.92712 7.08353 7.21939 7.25409 7.37268 7.62080 7.65924 8.40427 8.88489 9.46597 10.98336 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.039476 B = 0.002547 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.115526 B =10990.811909 C =11629.247094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.113 4.113 11 C 0.110 3.890 12 N -0.724 5.724 13 C 0.216 3.784 14 C 0.022 3.978 15 N -0.386 5.386 16 C 0.007 3.993 17 C 0.164 3.836 18 C -0.190 4.190 19 N -0.650 5.650 20 C 0.527 3.473 21 O -0.517 6.517 22 C -0.137 4.137 23 S -0.042 6.042 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.404 0.596 32 H 0.167 0.833 33 H 0.143 0.857 34 H 0.414 0.586 35 H 0.152 0.848 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.727 -12.091 1.061 24.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.563 4.563 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.151 4.151 11 C -0.013 4.013 12 N -0.349 5.349 13 C 0.103 3.897 14 C -0.146 4.146 15 N -0.094 5.094 16 C -0.245 4.245 17 C 0.059 3.941 18 C -0.224 4.224 19 N -0.294 5.294 20 C 0.313 3.687 21 O -0.393 6.393 22 C -0.288 4.288 23 S 0.194 5.806 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.240 0.760 32 H 0.184 0.816 33 H 0.161 0.839 34 H 0.252 0.748 35 H 0.170 0.830 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 23.389 -10.932 0.694 25.827 hybrid contribution -2.012 -0.976 0.385 2.269 sum 21.377 -11.909 1.079 24.494 Atomic orbital electron populations 1.69906 1.06359 1.27071 1.50638 1.25042 0.94761 0.99288 0.94385 0.86765 0.80350 0.83502 0.78597 1.20204 1.21319 1.18912 1.21068 0.89250 0.94533 1.51485 0.91053 1.19501 0.97441 0.91212 0.96656 1.21682 0.90178 1.01245 1.01971 1.21845 0.97180 0.80846 1.01403 1.45186 1.02028 1.09341 1.78361 1.18736 0.86186 0.93099 0.91639 1.22418 0.86795 0.99160 1.06270 1.67489 1.14758 1.19923 1.07276 1.22049 0.97457 0.90121 1.14898 1.18190 0.92822 0.83969 0.99087 1.20596 0.92909 0.96551 1.12333 1.42997 1.16003 1.08164 1.62234 1.19949 0.81910 0.89594 0.77248 1.90839 1.77559 1.17632 1.53276 1.23876 1.03208 0.96377 1.05349 1.85875 0.99687 1.24818 1.70201 0.92598 0.96277 0.96694 0.91979 0.91977 0.91723 0.91695 0.76006 0.81604 0.83909 0.74790 0.83027 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 2 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 3 Si 0.88 20.71 27.47 -169.99 -4.67 16.04 16 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 7 C -0.53 -14.11 9.66 -34.44 -0.33 -14.44 16 8 H 0.07 2.06 7.99 -52.49 -0.42 1.65 16 9 C -0.01 -0.22 4.04 -27.88 -0.11 -0.33 16 10 C -0.11 -1.84 5.27 -26.73 -0.14 -1.98 16 11 C 0.11 1.39 4.93 -4.04 -0.02 1.37 16 12 N -0.72 -7.62 5.75 -58.51 -0.34 -7.96 16 13 C 0.22 2.30 6.67 -83.58 -0.56 1.74 16 14 C 0.02 0.26 10.49 -17.31 -0.18 0.08 16 15 N -0.39 -4.92 10.33 -11.76 -0.12 -5.04 16 16 C 0.01 0.08 6.94 -16.83 -0.12 -0.04 16 17 C 0.16 1.63 6.55 -83.67 -0.55 1.09 16 18 C -0.19 -1.75 9.82 -38.90 -0.38 -2.13 16 19 N -0.65 -5.64 5.09 -10.25 -0.05 -5.69 16 20 C 0.53 5.01 7.61 -11.86 -0.09 4.92 16 21 O -0.52 -6.34 17.77 5.55 0.10 -6.24 16 22 C -0.14 -1.00 6.63 35.85 0.24 -0.77 16 23 S -0.04 -0.41 22.47 -107.50 -2.42 -2.83 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 26 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.80 7.96 -51.93 -0.41 0.39 16 30 H 0.06 0.80 7.96 -51.93 -0.41 0.39 16 31 H 0.40 3.71 8.50 -40.82 -0.35 3.36 16 32 H 0.17 1.77 6.74 -52.48 -0.35 1.41 16 33 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.41 2.90 8.59 -40.82 -0.35 2.54 16 35 H 0.15 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 319.09 15.07 4.81 4.81 Total: -1.00 -31.87 319.09 -8.60 -40.47 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -4.34 Total: 1.31 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -2.34 Total: -8.72 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.26 Total: -44.84 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: 0.10 Total: -6.24 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -2.42 Total: -2.83 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.87 -8.60 -40.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.785 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds