Wall clock time and date at job start Tue Mar 31 2020 06:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00233 * 2 1 4 4 H 1.48496 * 109.47238 * 270.00456 * 3 2 1 5 5 H 1.48499 * 109.46498 * 30.00672 * 3 2 1 6 6 H 1.48498 * 109.46845 * 149.99986 * 3 2 1 7 7 C 1.37881 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00033 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99881 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46761 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46541 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46767 * 179.97438 * 11 10 9 13 13 C 1.40040 * 120.00060 * 179.97438 * 12 11 10 14 14 C 1.38661 * 120.32870 * 0.02562 * 13 12 11 15 15 N 1.32034 * 120.72540 * 179.89408 * 14 13 12 16 16 C 1.32200 * 121.79623 * 0.06216 * 15 14 13 17 17 C 1.39735 * 120.94129 * 0.06247 * 16 15 14 18 18 C 1.39088 * 118.61665 * 359.83487 * 17 16 15 19 19 N 1.39128 * 121.82265 * 179.72536 * 17 16 15 20 20 C 1.33159 * 125.78302 * 22.20116 * 19 17 16 21 21 O 1.21291 * 118.31536 * 179.23407 * 20 19 17 22 22 C 1.50372 * 123.37131 * 359.25830 * 20 19 17 23 23 S 1.76564 * 119.98859 * 180.18027 * 16 15 14 24 24 H 0.97001 * 120.00000 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46690 * 60.00019 * 9 7 2 26 26 H 1.08996 * 109.47227 * 300.00081 * 9 7 2 27 27 H 1.08996 * 109.47431 * 60.00378 * 10 9 7 28 28 H 1.08999 * 109.47005 * 299.99653 * 10 9 7 29 29 H 1.08996 * 109.47097 * 59.99993 * 11 10 9 30 30 H 1.08999 * 109.47040 * 299.99451 * 11 10 9 31 31 H 0.96998 * 120.00140 * 0.02562 * 12 11 10 32 32 H 1.08006 * 119.63616 * 0.17275 * 14 13 12 33 33 H 1.08008 * 120.70743 * 180.15600 * 18 17 16 34 34 H 0.96996 * 117.11142 * 202.22371 * 19 17 16 35 35 H 1.08997 * 109.54396 * 204.97852 * 22 20 19 36 36 H 1.09002 * 109.61796 * 84.74986 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6525 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5515 -2.6366 -0.0009 12 7 6.0398 -4.0178 -0.0002 13 6 7.4166 -4.2738 -0.0006 14 6 8.3237 -3.2250 -0.0011 15 7 9.6235 -3.4574 0.0007 16 6 10.1115 -4.6860 0.0018 17 6 9.2628 -5.7961 -0.0002 18 6 7.8882 -5.5838 0.0001 19 7 9.7564 -7.0969 -0.0048 20 6 10.9684 -7.4712 0.4004 21 8 11.2535 -8.6490 0.3502 22 6 12.0015 -6.5087 0.9176 23 16 11.8585 -4.9417 0.0089 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6804 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.6578 -3.1507 -0.8907 28 1 3.6585 -3.1502 0.8893 29 1 5.9148 -2.1227 0.8890 30 1 5.9148 -2.1229 -0.8910 31 1 5.4095 -4.7551 -0.0002 32 1 7.9631 -2.2070 0.0016 33 1 7.2014 -6.4174 0.0012 34 1 9.1655 -7.7928 -0.3325 35 1 12.9968 -6.9273 0.7686 36 1 11.8362 -6.3305 1.9802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168434583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:34 Heat of formation + Delta-G solvation = -25.582671 kcal Electronic energy + Delta-G solvation = -19728.971322 eV Core-core repulsion = 16530.773968 eV Total energy + Delta-G solvation = -3198.197354 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.02368 -40.75158 -38.02450 -36.75517 -35.56786 -33.86318 -32.13527 -31.09396 -30.47118 -28.35255 -25.46474 -24.87037 -23.71400 -22.02559 -21.64907 -19.34568 -19.11569 -18.94943 -18.57384 -17.48697 -17.05417 -16.86655 -16.40439 -16.27434 -16.02478 -15.51686 -15.26963 -15.03548 -14.71719 -14.33101 -14.14039 -13.99944 -13.74767 -13.34421 -12.85496 -12.65006 -12.45241 -12.31343 -12.05802 -11.78865 -11.68985 -11.46608 -11.31169 -11.30371 -10.74798 -10.65691 -9.88531 -9.40862 -8.28001 -8.21122 -6.32478 -0.29596 0.06837 0.27505 1.02584 1.39788 1.41473 1.41801 1.52630 1.61396 2.32532 2.38184 2.62586 2.95035 3.08418 3.54238 3.73087 3.79287 3.93439 4.03458 4.16186 4.25261 4.32006 4.34894 4.56312 4.77005 4.93856 4.94606 5.06247 5.15297 5.31957 5.50015 5.59935 5.67062 5.84063 6.04069 6.29049 6.51843 6.61717 6.76892 6.81336 7.32657 8.88666 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.039476 B = 0.002547 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.115526 B =10990.811909 C =11629.247094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.239 1.239 7 C -0.533 4.533 8 H 0.032 0.968 9 C -0.012 4.012 10 C -0.103 4.103 11 C 0.124 3.876 12 N -0.720 5.720 13 C 0.213 3.787 14 C 0.011 3.989 15 N -0.411 5.411 16 C -0.007 4.007 17 C 0.164 3.836 18 C -0.178 4.178 19 N -0.643 5.643 20 C 0.528 3.472 21 O -0.547 6.547 22 C -0.127 4.127 23 S -0.058 6.058 24 H 0.265 0.735 25 H 0.026 0.974 26 H 0.024 0.976 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.412 0.588 32 H 0.172 0.828 33 H 0.170 0.830 34 H 0.422 0.578 35 H 0.173 0.827 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.890 -12.194 1.313 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.162 1.162 7 C -0.571 4.571 8 H 0.050 0.950 9 C -0.050 4.050 10 C -0.141 4.141 11 C 0.000 4.000 12 N -0.347 5.347 13 C 0.100 3.900 14 C -0.158 4.158 15 N -0.120 5.120 16 C -0.259 4.259 17 C 0.059 3.941 18 C -0.212 4.212 19 N -0.287 5.287 20 C 0.315 3.685 21 O -0.425 6.425 22 C -0.277 4.277 23 S 0.178 5.822 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.249 0.751 32 H 0.189 0.811 33 H 0.188 0.812 34 H 0.261 0.739 35 H 0.190 0.810 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 25.566 -11.054 0.941 27.869 hybrid contribution -2.711 -1.057 0.302 2.926 sum 22.855 -12.111 1.243 25.895 Atomic orbital electron populations 1.70075 1.08480 1.28134 1.52822 1.26070 0.95599 1.03750 0.94224 0.85648 0.79739 0.78030 0.79182 1.19281 1.21590 1.16175 1.21521 0.92384 0.92976 1.50188 0.95012 1.19469 0.93619 0.94692 0.97174 1.21447 0.92986 0.97957 1.01679 1.21531 0.94126 0.82164 1.02155 1.44927 1.02211 1.08700 1.78828 1.18704 0.85794 0.93447 0.92030 1.22573 0.86835 0.99836 1.06510 1.67490 1.15380 1.20732 1.08397 1.22346 0.98378 0.90354 1.14851 1.18169 0.92968 0.83990 0.99020 1.20850 0.93031 0.96878 1.10462 1.42933 1.16077 1.07939 1.61752 1.20273 0.82192 0.89439 0.76630 1.90835 1.78105 1.18896 1.54675 1.23988 1.03628 0.94237 1.05871 1.85897 0.99014 1.26327 1.70926 0.92618 0.95579 0.95725 0.92365 0.92374 0.91057 0.91016 0.75127 0.81117 0.81243 0.73875 0.80985 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.56 13.96 21.45 0.30 -58.26 16 2 C 0.00 0.00 5.47 84.66 0.46 0.46 16 3 Si 0.95 42.12 27.47 68.60 1.88 44.01 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 7 C -0.53 -28.95 9.66 25.60 0.25 -28.70 16 8 H 0.03 1.91 7.99 -2.91 -0.02 1.88 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 10 C -0.10 -3.20 5.27 30.60 0.16 -3.04 16 11 C 0.12 2.82 4.93 86.38 0.43 3.24 16 12 N -0.72 -13.37 5.75 -339.03 -1.95 -15.32 16 13 C 0.21 4.01 6.67 38.17 0.25 4.27 16 14 C 0.01 0.23 10.49 84.76 0.89 1.12 16 15 N -0.41 -9.96 10.33 -191.12 -1.97 -11.94 16 16 C -0.01 -0.15 6.94 85.00 0.59 0.44 16 17 C 0.16 2.91 6.55 38.55 0.25 3.16 16 18 C -0.18 -2.82 9.82 22.71 0.22 -2.60 16 19 N -0.64 -9.82 5.09 -305.64 -1.55 -11.38 16 20 C 0.53 9.02 7.61 87.80 0.67 9.69 16 21 O -0.55 -12.58 17.77 -3.06 -0.05 -12.63 16 22 C -0.13 -1.57 6.63 71.13 0.47 -1.10 16 23 S -0.06 -1.05 22.47 -56.49 -1.27 -2.32 16 24 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 25 H 0.03 1.04 7.20 -2.38 -0.02 1.03 16 26 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 1.56 7.96 -2.39 -0.02 1.54 16 30 H 0.07 1.57 7.96 -2.39 -0.02 1.55 16 31 H 0.41 6.52 8.50 -92.71 -0.79 5.73 16 32 H 0.17 3.34 6.74 -2.91 -0.02 3.32 16 33 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.42 5.00 8.59 -92.71 -0.80 4.20 16 35 H 0.17 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -69.95 319.09 -0.36 -70.31 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -0.51 Total: 10.94 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 4.77 Total: -13.42 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -5.18 Total: -96.89 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.05 Total: -12.63 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.88 Total: 44.01 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -1.27 Total: -2.32 kcal Total: -69.95 -0.36 -70.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.727 kcal (2) G-P(sol) polarization free energy of solvation -69.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds