Wall clock time and date at job start Tue Mar 31 2020 06:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00107 * 2 1 4 4 H 1.48493 * 109.47288 * 270.00238 * 3 2 1 5 5 H 1.48504 * 109.47119 * 30.00430 * 3 2 1 6 6 H 1.48505 * 109.46729 * 149.99916 * 3 2 1 7 7 C 1.38819 * 119.99580 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99418 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00052 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46985 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46803 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.46937 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00328 * 180.02562 * 13 12 11 15 15 O 1.21739 * 119.99660 * 0.02562 * 14 13 12 16 16 C 1.46449 * 120.00436 * 180.02562 * 14 13 12 17 17 C 1.37472 * 125.80684 * 180.58325 * 16 14 13 18 18 C 1.40657 * 107.55602 * 180.02562 * 17 16 14 19 19 S 1.76023 * 142.39754 * 179.34221 * 18 17 16 20 20 C 1.75594 * 91.31118 * 180.02562 * 19 18 17 21 21 C 1.32778 * 110.47257 * 359.97438 * 20 19 18 22 22 C 1.38244 * 108.03129 * 359.60893 * 18 17 16 23 23 N 1.37916 * 125.80579 * 0.02562 * 16 14 13 24 24 H 0.97001 * 125.68258 * 0.07122 * 23 16 14 25 25 H 0.97001 * 120.00174 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99533 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.46912 * 59.99646 * 10 9 7 28 28 H 1.09001 * 109.47365 * 299.99930 * 10 9 7 29 29 H 1.09001 * 109.47383 * 60.00182 * 11 10 9 30 30 H 1.08996 * 109.47231 * 299.99793 * 11 10 9 31 31 H 1.08998 * 109.47200 * 60.00445 * 12 11 10 32 32 H 1.08996 * 109.47168 * 299.99966 * 12 11 10 33 33 H 0.97002 * 120.00426 * 359.97438 * 13 12 11 34 34 H 1.08000 * 126.22004 * 359.39042 * 17 16 14 35 35 H 1.07999 * 124.76223 * 180.02562 * 20 19 18 36 36 H 1.08002 * 122.15800 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 6 1.0636 -4.8197 -0.0031 12 6 1.8286 -6.1448 -0.0050 13 7 0.8766 -7.2582 -0.0060 14 6 1.3257 -8.5289 -0.0071 15 8 2.5226 -8.7514 -0.0068 16 6 0.3740 -9.6421 -0.0087 17 6 0.6987 -10.9779 0.0014 18 6 -0.5041 -11.7069 -0.0049 19 16 -1.1400 -13.3483 -0.0137 20 6 -2.7915 -12.7515 -0.0163 21 6 -2.8055 -11.4239 -0.0102 22 6 -1.5514 -10.8045 -0.0099 23 7 -1.0004 -9.5285 -0.0096 24 1 -1.4994 -8.6966 -0.0103 25 1 -0.4850 0.8400 0.0004 26 1 0.3554 -2.3880 -0.0016 27 1 2.6846 -3.7153 0.8872 28 1 2.6846 -3.7139 -0.8928 29 1 0.4366 -4.7614 -0.8928 30 1 0.4373 -4.7625 0.8871 31 1 2.4559 -6.2034 0.8845 32 1 2.4546 -6.2017 -0.8954 33 1 -0.0771 -7.0810 -0.0050 34 1 1.6961 -11.3922 0.0026 35 1 -3.6721 -13.3767 -0.0212 36 1 -3.7259 -10.8587 -0.0110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170121007.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:52 Heat of formation + Delta-G solvation = 39.031818 kcal Electronic energy + Delta-G solvation = -19365.541451 eV Core-core repulsion = 16170.145992 eV Total energy + Delta-G solvation = -3195.395459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.65851 -39.42785 -36.17096 -35.62517 -34.47726 -32.13295 -31.25172 -29.90122 -28.43443 -25.48943 -23.79932 -23.04400 -22.06951 -21.31171 -20.74578 -19.99639 -18.90879 -17.15549 -16.67118 -16.13044 -15.93283 -15.78274 -15.10624 -14.75392 -14.47301 -14.20811 -14.17486 -13.86619 -13.32707 -13.22115 -13.00692 -12.56587 -12.21615 -11.91500 -11.73857 -11.18166 -11.05594 -10.97836 -10.85576 -10.69235 -10.34445 -10.08111 -10.07870 -9.75237 -9.28912 -8.92174 -8.42653 -8.01573 -6.98319 -5.81446 -3.10566 0.41239 1.19636 1.62989 1.73114 2.40255 2.47530 2.93964 3.09844 3.41440 3.46622 3.48316 4.38888 4.49962 4.55068 4.62083 4.99124 5.00521 5.14299 5.21127 5.39510 5.51903 5.53168 5.57590 5.63984 5.85848 5.96702 6.08364 6.11754 6.19753 6.24785 6.33081 6.71866 6.76182 6.90307 7.24814 7.66507 7.90558 8.37455 9.48664 10.05059 10.39564 11.41560 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.042128 B = 0.002132 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.477419 B =13132.137839 C =13770.860322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.138 4.138 12 C 0.122 3.878 13 N -0.724 5.724 14 C 0.584 3.416 15 O -0.522 6.522 16 C 0.010 3.990 17 C -0.072 4.072 18 C -0.220 4.220 19 S 0.131 5.869 20 C -0.188 4.188 21 C -0.115 4.115 22 C 0.066 3.934 23 N -0.541 5.541 24 H 0.420 0.580 25 H 0.255 0.745 26 H 0.383 0.617 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.395 0.605 34 H 0.157 0.843 35 H 0.173 0.827 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.057 -27.510 -0.010 28.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.177 4.177 12 C -0.001 4.001 13 N -0.375 5.375 14 C 0.370 3.630 15 O -0.398 6.398 16 C -0.105 4.105 17 C -0.102 4.102 18 C -0.340 4.340 19 S 0.390 5.610 20 C -0.324 4.324 21 C -0.148 4.148 22 C -0.053 4.053 23 N -0.144 5.144 24 H 0.258 0.742 25 H 0.065 0.935 26 H 0.217 0.783 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.229 0.771 34 H 0.175 0.825 35 H 0.190 0.810 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.450 -28.774 -0.006 29.286 hybrid contribution -1.395 2.925 -0.008 3.241 sum -6.845 -25.849 -0.014 26.740 Atomic orbital electron populations 1.69657 1.05157 1.25732 1.57807 1.24766 0.95579 0.97818 1.02936 0.86152 0.78663 0.83604 0.77561 1.21657 1.21736 1.20679 1.19248 0.91130 0.84078 1.42715 0.91039 1.42332 1.05845 0.99990 1.89657 1.20516 0.93216 0.85098 0.98349 1.21961 0.99670 0.93312 1.02720 1.21451 0.91542 0.84100 1.02988 1.45976 1.10594 1.05770 1.75134 1.16935 0.87317 0.81565 0.77175 1.90891 1.14765 1.84243 1.49870 1.20379 0.81467 0.95204 1.13407 1.20427 0.96976 0.89136 1.03686 1.22709 0.97426 0.97144 1.16744 1.83960 0.97183 1.02104 1.77716 1.25254 1.01087 0.97589 1.08509 1.18920 0.95323 0.93908 1.06670 1.18362 0.93658 0.84178 1.09101 1.41976 1.05173 1.06433 1.60821 0.74167 0.93486 0.78330 0.95936 0.95936 0.91273 0.91264 0.90829 0.90835 0.77108 0.82500 0.80977 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.41 5.60 -59.91 -0.34 -18.74 16 10 C 0.16 3.04 6.26 -4.05 -0.03 3.01 16 11 C -0.14 -2.01 5.44 -26.73 -0.15 -2.15 16 12 C 0.12 1.57 5.67 -4.04 -0.02 1.55 16 13 N -0.72 -7.95 5.55 -61.68 -0.34 -8.29 16 14 C 0.58 7.44 7.78 -12.96 -0.10 7.34 16 15 O -0.52 -8.48 16.86 5.15 0.09 -8.39 16 16 C 0.01 0.11 7.01 -82.10 -0.58 -0.46 16 17 C -0.07 -0.80 10.60 -38.95 -0.41 -1.22 16 18 C -0.22 -2.28 7.26 -38.67 -0.28 -2.56 16 19 S 0.13 1.03 23.31 -107.50 -2.51 -1.47 16 20 C -0.19 -1.20 11.13 28.86 0.32 -0.88 16 21 C -0.11 -0.83 10.16 -40.84 -0.42 -1.24 16 22 C 0.07 0.62 7.67 -84.00 -0.64 -0.03 16 23 N -0.54 -4.67 6.14 -7.34 -0.05 -4.72 16 24 H 0.42 2.41 8.14 -40.82 -0.33 2.08 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.38 9.97 7.67 -40.82 -0.31 9.66 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 3.25 7.55 -40.82 -0.31 2.94 16 34 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 LS Contribution 328.40 15.07 4.95 4.95 Total: -1.00 -33.96 328.40 -9.35 -43.30 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.30 Total: 7.47 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -2.55 Total: -4.07 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.00 Total: -59.13 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.47 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.96 -9.35 -43.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170121007.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.335 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds