Wall clock time and date at job start Tue Mar 31 2020 06:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00107 * 2 1 4 4 H 1.48493 * 109.47288 * 270.00238 * 3 2 1 5 5 H 1.48504 * 109.47119 * 30.00430 * 3 2 1 6 6 H 1.48505 * 109.46729 * 149.99916 * 3 2 1 7 7 C 1.38819 * 119.99580 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99418 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00052 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46985 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46803 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.46937 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00328 * 180.02562 * 13 12 11 15 15 O 1.21739 * 119.99660 * 0.02562 * 14 13 12 16 16 C 1.46449 * 120.00436 * 180.02562 * 14 13 12 17 17 C 1.37472 * 125.80684 * 180.58325 * 16 14 13 18 18 C 1.40657 * 107.55602 * 180.02562 * 17 16 14 19 19 S 1.76023 * 142.39754 * 179.34221 * 18 17 16 20 20 C 1.75594 * 91.31118 * 180.02562 * 19 18 17 21 21 C 1.32778 * 110.47257 * 359.97438 * 20 19 18 22 22 C 1.38244 * 108.03129 * 359.60893 * 18 17 16 23 23 N 1.37916 * 125.80579 * 0.02562 * 16 14 13 24 24 H 0.97001 * 125.68258 * 0.07122 * 23 16 14 25 25 H 0.97001 * 120.00174 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99533 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.46912 * 59.99646 * 10 9 7 28 28 H 1.09001 * 109.47365 * 299.99930 * 10 9 7 29 29 H 1.09001 * 109.47383 * 60.00182 * 11 10 9 30 30 H 1.08996 * 109.47231 * 299.99793 * 11 10 9 31 31 H 1.08998 * 109.47200 * 60.00445 * 12 11 10 32 32 H 1.08996 * 109.47168 * 299.99966 * 12 11 10 33 33 H 0.97002 * 120.00426 * 359.97438 * 13 12 11 34 34 H 1.08000 * 126.22004 * 359.39042 * 17 16 14 35 35 H 1.07999 * 124.76223 * 180.02562 * 20 19 18 36 36 H 1.08002 * 122.15800 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 6 1.0636 -4.8197 -0.0031 12 6 1.8286 -6.1448 -0.0050 13 7 0.8766 -7.2582 -0.0060 14 6 1.3257 -8.5289 -0.0071 15 8 2.5226 -8.7514 -0.0068 16 6 0.3740 -9.6421 -0.0087 17 6 0.6987 -10.9779 0.0014 18 6 -0.5041 -11.7069 -0.0049 19 16 -1.1400 -13.3483 -0.0137 20 6 -2.7915 -12.7515 -0.0163 21 6 -2.8055 -11.4239 -0.0102 22 6 -1.5514 -10.8045 -0.0099 23 7 -1.0004 -9.5285 -0.0096 24 1 -1.4994 -8.6966 -0.0103 25 1 -0.4850 0.8400 0.0004 26 1 0.3554 -2.3880 -0.0016 27 1 2.6846 -3.7153 0.8872 28 1 2.6846 -3.7139 -0.8928 29 1 0.4366 -4.7614 -0.8928 30 1 0.4373 -4.7625 0.8871 31 1 2.4559 -6.2034 0.8845 32 1 2.4546 -6.2017 -0.8954 33 1 -0.0771 -7.0810 -0.0050 34 1 1.6961 -11.3922 0.0026 35 1 -3.6721 -13.3767 -0.0212 36 1 -3.7259 -10.8587 -0.0110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170121007.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:52 Heat of formation + Delta-G solvation = 14.899351 kcal Electronic energy + Delta-G solvation = -19366.587913 eV Core-core repulsion = 16170.145992 eV Total energy + Delta-G solvation = -3196.441922 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.41345 -40.42049 -37.57264 -36.27009 -36.00753 -33.82612 -32.06657 -31.45139 -29.35698 -27.00752 -24.97120 -24.13201 -23.13947 -22.66834 -21.48457 -20.90342 -19.73408 -19.10074 -17.52434 -17.26560 -16.99150 -16.53748 -16.38915 -16.07997 -15.44206 -15.32443 -15.21700 -15.02760 -14.81384 -14.59096 -13.90716 -13.85555 -13.33044 -12.83867 -12.83557 -12.63234 -12.56402 -12.47385 -12.10885 -12.08283 -11.82589 -11.75725 -11.39614 -10.96043 -10.78954 -10.32112 -9.13036 -9.03424 -8.66378 -7.98337 -5.27326 -0.27944 0.57554 0.82633 1.15242 1.47186 1.48617 1.57191 1.71381 1.76958 2.02848 2.16314 2.54959 3.35775 3.64537 3.71829 3.81888 3.98435 4.05036 4.23673 4.36123 4.42006 4.53248 4.68826 4.70081 4.76033 4.84354 4.94004 5.08063 5.15834 5.28851 5.29141 5.40437 5.47846 5.53395 6.23032 6.25140 6.41019 6.94839 7.31184 8.05771 8.29273 9.25130 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.042128 B = 0.002132 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.477419 B =13132.137839 C =13770.860322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.975 3.025 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.249 4.249 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.151 3.849 11 C -0.119 4.119 12 C 0.133 3.867 13 N -0.711 5.711 14 C 0.587 3.413 15 O -0.564 6.564 16 C -0.005 4.005 17 C -0.084 4.084 18 C -0.253 4.253 19 S 0.129 5.871 20 C -0.169 4.169 21 C -0.129 4.129 22 C 0.070 3.930 23 N -0.530 5.530 24 H 0.433 0.567 25 H 0.252 0.748 26 H 0.376 0.624 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.411 0.589 34 H 0.152 0.848 35 H 0.207 0.793 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.358 -28.371 -0.008 29.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.381 4.381 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.157 4.157 12 C 0.009 3.991 13 N -0.362 5.362 14 C 0.375 3.625 15 O -0.443 6.443 16 C -0.120 4.120 17 C -0.115 4.115 18 C -0.373 4.373 19 S 0.388 5.612 20 C -0.305 4.305 21 C -0.162 4.162 22 C -0.051 4.051 23 N -0.134 5.134 24 H 0.274 0.726 25 H 0.061 0.939 26 H 0.208 0.792 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.247 0.753 34 H 0.170 0.830 35 H 0.224 0.776 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.757 -29.637 -0.005 30.397 hybrid contribution -1.031 3.042 -0.010 3.212 sum -7.789 -26.594 -0.015 27.711 Atomic orbital electron populations 1.69800 1.06536 1.26200 1.59367 1.25592 0.96498 1.01176 1.03559 0.85123 0.77707 0.79336 0.77494 1.21317 1.22021 1.19502 1.19647 0.91584 0.85403 1.41441 0.90683 1.42536 1.05740 1.01163 1.89570 1.20682 0.94079 0.84659 0.98149 1.21711 0.98556 0.92058 1.03380 1.21202 0.91487 0.83787 1.02643 1.45758 1.11212 1.04850 1.74401 1.17095 0.86999 0.82106 0.76301 1.90864 1.16554 1.84865 1.52009 1.20015 0.82266 0.94423 1.15289 1.20550 0.97434 0.89739 1.03784 1.22966 0.97415 0.98775 1.18137 1.83976 0.98506 1.00986 1.77700 1.25736 1.01068 0.97680 1.05980 1.19217 0.95349 0.94351 1.07272 1.18823 0.94415 0.84074 1.07741 1.41873 1.04290 1.07076 1.60180 0.72605 0.93894 0.79222 0.95873 0.95859 0.90612 0.90603 0.91281 0.91284 0.75286 0.83004 0.77620 0.81368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.53 13.06 21.65 0.28 -58.25 16 2 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 3 Si 0.97 45.87 29.55 68.60 2.03 47.89 16 4 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.25 -13.89 9.99 84.04 0.84 -13.05 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 9 N -0.75 -37.32 5.60 -343.46 -1.92 -39.24 16 10 C 0.15 5.77 6.26 86.38 0.54 6.32 16 11 C -0.12 -3.30 5.44 30.60 0.17 -3.14 16 12 C 0.13 3.30 5.67 86.38 0.49 3.79 16 13 N -0.71 -14.91 5.55 -467.27 -2.59 -17.50 16 14 C 0.59 14.94 7.78 86.38 0.67 15.61 16 15 O -0.56 -18.76 16.86 -4.47 -0.08 -18.83 16 16 C -0.01 -0.12 7.01 40.15 0.28 0.16 16 17 C -0.08 -1.93 10.60 22.68 0.24 -1.69 16 18 C -0.25 -5.09 7.26 22.86 0.17 -4.92 16 19 S 0.13 1.86 23.31 -56.49 -1.32 0.54 16 20 C -0.17 -1.62 11.13 66.64 0.74 -0.88 16 21 C -0.13 -1.48 10.16 21.49 0.22 -1.26 16 22 C 0.07 1.19 7.67 38.40 0.29 1.49 16 23 N -0.53 -8.46 6.14 -177.14 -1.09 -9.55 16 24 H 0.43 4.16 8.14 -92.71 -0.75 3.41 16 25 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 26 H 0.38 19.59 7.67 -92.70 -0.71 18.88 16 27 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 33 H 0.41 6.04 7.55 -92.71 -0.70 5.34 16 34 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 35 H 0.21 0.51 8.06 -2.91 -0.02 0.49 16 36 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 Total: -1.00 -72.93 328.40 -0.59 -73.53 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -1.03 Total: 22.85 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 5.12 Total: -1.44 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -5.32 Total: -124.54 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.08 Total: -18.83 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.32 Total: 0.54 kcal Total: -72.93 -0.59 -73.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170121007.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.427 kcal (2) G-P(sol) polarization free energy of solvation -72.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds