Wall clock time and date at job start Tue Mar 31 2020 06:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48496 * 109.46933 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46921 * 299.99421 * 3 2 1 6 6 H 1.48498 * 109.46946 * 59.99738 * 3 2 1 7 7 C 1.38815 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00097 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99838 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46748 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 11 15 15 O 1.21733 * 120.00174 * 359.72127 * 14 13 12 16 16 C 1.46411 * 119.99805 * 179.72456 * 14 13 12 17 17 C 1.35775 * 124.96270 * 179.71941 * 16 14 13 18 18 C 1.38871 * 115.18851 * 179.82855 * 17 16 14 19 19 N 1.39746 * 139.91140 * 180.11726 * 18 17 16 20 20 H 0.96997 * 125.63827 * 0.34224 * 19 18 17 21 21 C 1.36217 * 108.73072 * 180.32155 * 19 18 17 22 22 C 1.34509 * 109.29556 * 359.97438 * 21 19 18 23 23 C 1.38235 * 113.39191 * 0.45280 * 18 17 16 24 24 S 1.75620 * 124.95995 * 0.02562 * 16 14 13 25 25 H 0.97003 * 120.00466 * 0.02562 * 1 2 3 26 26 H 0.96992 * 120.00189 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.46761 * 60.00109 * 10 9 7 28 28 H 1.09007 * 109.46829 * 300.00128 * 10 9 7 29 29 H 1.08995 * 109.47672 * 60.00334 * 11 10 9 30 30 H 1.09006 * 109.46819 * 299.99764 * 11 10 9 31 31 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 32 32 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 33 33 H 0.97001 * 119.99790 * 359.97438 * 13 12 11 34 34 H 1.08004 * 122.40066 * 0.02562 * 17 16 14 35 35 H 1.07997 * 125.35369 * 180.02562 * 21 19 18 36 36 H 1.08008 * 126.07359 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0638 -4.8197 -0.0001 12 6 1.8288 -6.1448 0.0005 13 7 0.8768 -7.2583 0.0005 14 6 1.3262 -8.5289 0.0067 15 8 2.5230 -8.7514 0.0072 16 6 0.3747 -9.6418 0.0128 17 6 0.7149 -10.9562 0.0139 18 6 -0.3536 -11.8432 0.0238 19 7 -0.6014 -13.2185 0.0310 20 1 0.0742 -13.9145 0.0347 21 6 -1.9485 -13.4203 0.0324 22 6 -2.5761 -12.2306 0.0270 23 6 -1.5863 -11.2176 0.0209 24 16 -1.3732 -9.4714 0.0122 25 1 -0.4851 0.8400 -0.0004 26 1 0.3556 -2.3881 -0.0002 27 1 2.6847 -3.7145 0.8905 28 1 2.6848 -3.7145 -0.8895 29 1 0.4375 -4.7619 -0.8903 30 1 0.4368 -4.7621 0.8897 31 1 2.4549 -6.2024 0.8910 32 1 2.4561 -6.2025 -0.8890 33 1 -0.0768 -7.0810 0.0005 34 1 1.7427 -11.2880 0.0106 35 1 -2.4360 -14.3839 0.0380 36 1 -3.6450 -12.0754 0.0270 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174698769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:31 Heat of formation + Delta-G solvation = 40.601798 kcal Electronic energy + Delta-G solvation = -19270.580608 eV Core-core repulsion = 16075.253228 eV Total energy + Delta-G solvation = -3195.327380 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.53095 -39.67626 -36.16239 -35.25675 -34.34695 -32.02470 -31.28630 -29.85440 -28.37207 -25.55535 -23.95976 -22.59441 -21.76637 -21.21618 -20.99536 -19.77458 -18.72283 -17.23361 -16.74932 -16.07233 -15.76403 -15.73279 -15.04917 -14.68485 -14.57537 -14.28699 -13.96145 -13.82606 -13.26504 -13.09465 -12.97545 -12.51713 -12.28710 -11.76425 -11.66178 -11.18487 -10.95274 -10.91861 -10.77135 -10.61388 -10.18172 -10.02564 -9.98582 -9.69884 -9.13634 -8.86948 -8.45263 -7.97673 -6.91761 -5.75686 -3.04538 0.26380 1.15162 1.69199 2.09075 2.29211 2.58769 3.10420 3.13545 3.44981 3.50649 3.52992 4.47872 4.54109 4.60455 4.64872 4.93506 5.11392 5.13572 5.32271 5.43894 5.58875 5.59058 5.63599 5.68122 5.97514 6.07368 6.13211 6.20632 6.33581 6.36725 6.39844 6.80561 6.84862 7.00963 7.37733 7.72290 8.06044 8.43258 9.54444 10.11681 10.46389 11.47391 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.044406 B = 0.002249 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.395072 B =12444.332863 C =13048.954333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.157 3.843 11 C -0.139 4.139 12 C 0.123 3.877 13 N -0.720 5.720 14 C 0.590 3.410 15 O -0.533 6.533 16 C -0.236 4.236 17 C -0.031 4.031 18 C 0.023 3.977 19 N -0.557 5.557 20 H 0.420 0.580 21 C 0.058 3.942 22 C -0.172 4.172 23 C -0.187 4.187 24 S 0.169 5.831 25 H 0.255 0.745 26 H 0.384 0.616 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.399 0.601 34 H 0.149 0.851 35 H 0.179 0.821 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.696 -30.382 0.052 30.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.029 3.971 11 C -0.177 4.177 12 C 0.000 4.000 13 N -0.371 5.371 14 C 0.376 3.624 15 O -0.411 6.411 16 C -0.356 4.356 17 C -0.068 4.068 18 C -0.091 4.091 19 N -0.158 5.158 20 H 0.258 0.742 21 C -0.076 4.076 22 C -0.201 4.201 23 C -0.309 4.309 24 S 0.432 5.568 25 H 0.064 0.936 26 H 0.217 0.783 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.234 0.766 34 H 0.167 0.833 35 H 0.196 0.804 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.523 -29.216 0.045 29.733 hybrid contribution 0.802 -0.599 0.009 1.001 sum -4.721 -29.815 0.054 30.186 Atomic orbital electron populations 1.69668 1.05124 1.25559 1.57931 1.24762 0.95571 0.97773 1.03064 0.86091 0.78805 0.83997 0.77167 1.20512 1.21857 1.21862 1.19296 0.91140 0.84100 1.42462 0.91021 1.42348 1.05894 0.99988 1.89594 1.20517 0.93231 0.85133 0.98265 1.21966 0.99654 0.93211 1.02911 1.21427 0.91547 0.84205 1.02807 1.45924 1.10756 1.05486 1.74930 1.16818 0.87140 0.81816 0.76676 1.90841 1.15341 1.84552 1.50409 1.23768 0.97574 0.96770 1.17518 1.19228 0.98721 0.89590 0.99219 1.17993 0.93942 0.84050 1.13122 1.41908 1.07349 1.04775 1.61789 0.74243 1.21890 0.81739 0.99797 1.04147 1.20160 0.98459 0.89156 1.12348 1.23216 0.97357 0.97544 1.12819 1.83826 0.98267 0.98902 1.75832 0.93558 0.78276 0.95974 0.95989 0.91147 0.91158 0.90975 0.90960 0.76633 0.83296 0.80440 0.83429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.49 13.06 55.49 0.72 -27.77 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.73 -18.84 5.60 -59.90 -0.34 -19.18 16 10 C 0.16 3.15 6.26 -4.04 -0.03 3.13 16 11 C -0.14 -2.17 5.44 -26.73 -0.15 -2.32 16 12 C 0.12 1.74 5.67 -4.04 -0.02 1.71 16 13 N -0.72 -9.26 5.55 -61.70 -0.34 -9.60 16 14 C 0.59 8.32 7.77 -12.97 -0.10 8.22 16 15 O -0.53 -9.16 16.77 5.16 0.09 -9.07 16 16 C -0.24 -2.81 6.38 -37.18 -0.24 -3.05 16 17 C -0.03 -0.34 9.88 -40.23 -0.40 -0.74 16 18 C 0.02 0.22 7.67 -84.02 -0.64 -0.43 16 19 N -0.56 -3.46 6.21 -10.90 -0.07 -3.52 16 20 H 0.42 1.31 8.96 -40.82 -0.37 0.94 16 21 C 0.06 0.31 11.85 -16.92 -0.20 0.11 16 22 C -0.17 -1.30 10.85 -39.61 -0.43 -1.73 16 23 C -0.19 -1.87 7.31 -38.29 -0.28 -2.15 16 24 S 0.17 1.69 22.29 -107.50 -2.40 -0.70 16 25 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.38 10.23 7.67 -40.82 -0.31 9.92 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.40 4.37 7.53 -40.82 -0.31 4.06 16 34 H 0.15 1.49 8.00 -52.48 -0.42 1.07 16 35 H 0.18 0.23 8.06 -52.49 -0.42 -0.19 16 36 H 0.15 0.84 8.06 -52.48 -0.42 0.41 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -35.14 328.21 -9.47 -44.61 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -4.33 Total: 7.42 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.73 Total: -4.76 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: -0.02 Total: -60.07 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.40 Total: -0.70 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.14 -9.47 -44.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174698769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.211 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds