Wall clock time and date at job start Tue Mar 31 2020 06:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48496 * 109.46933 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46921 * 299.99421 * 3 2 1 6 6 H 1.48498 * 109.46946 * 59.99738 * 3 2 1 7 7 C 1.38815 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00097 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99838 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46748 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 11 15 15 O 1.21733 * 120.00174 * 359.72127 * 14 13 12 16 16 C 1.46411 * 119.99805 * 179.72456 * 14 13 12 17 17 C 1.35775 * 124.96270 * 179.71941 * 16 14 13 18 18 C 1.38871 * 115.18851 * 179.82855 * 17 16 14 19 19 N 1.39746 * 139.91140 * 180.11726 * 18 17 16 20 20 H 0.96997 * 125.63827 * 0.34224 * 19 18 17 21 21 C 1.36217 * 108.73072 * 180.32155 * 19 18 17 22 22 C 1.34509 * 109.29556 * 359.97438 * 21 19 18 23 23 C 1.38235 * 113.39191 * 0.45280 * 18 17 16 24 24 S 1.75620 * 124.95995 * 0.02562 * 16 14 13 25 25 H 0.97003 * 120.00466 * 0.02562 * 1 2 3 26 26 H 0.96992 * 120.00189 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.46761 * 60.00109 * 10 9 7 28 28 H 1.09007 * 109.46829 * 300.00128 * 10 9 7 29 29 H 1.08995 * 109.47672 * 60.00334 * 11 10 9 30 30 H 1.09006 * 109.46819 * 299.99764 * 11 10 9 31 31 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 32 32 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 33 33 H 0.97001 * 119.99790 * 359.97438 * 13 12 11 34 34 H 1.08004 * 122.40066 * 0.02562 * 17 16 14 35 35 H 1.07997 * 125.35369 * 180.02562 * 21 19 18 36 36 H 1.08008 * 126.07359 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0638 -4.8197 -0.0001 12 6 1.8288 -6.1448 0.0005 13 7 0.8768 -7.2583 0.0005 14 6 1.3262 -8.5289 0.0067 15 8 2.5230 -8.7514 0.0072 16 6 0.3747 -9.6418 0.0128 17 6 0.7149 -10.9562 0.0139 18 6 -0.3536 -11.8432 0.0238 19 7 -0.6014 -13.2185 0.0310 20 1 0.0742 -13.9145 0.0347 21 6 -1.9485 -13.4203 0.0324 22 6 -2.5761 -12.2306 0.0270 23 6 -1.5863 -11.2176 0.0209 24 16 -1.3732 -9.4714 0.0122 25 1 -0.4851 0.8400 -0.0004 26 1 0.3556 -2.3881 -0.0002 27 1 2.6847 -3.7145 0.8905 28 1 2.6848 -3.7145 -0.8895 29 1 0.4375 -4.7619 -0.8903 30 1 0.4368 -4.7621 0.8897 31 1 2.4549 -6.2024 0.8910 32 1 2.4561 -6.2025 -0.8890 33 1 -0.0768 -7.0810 0.0005 34 1 1.7427 -11.2880 0.0106 35 1 -2.4360 -14.3839 0.0380 36 1 -3.6450 -12.0754 0.0270 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174698769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:31 Heat of formation + Delta-G solvation = 15.338351 kcal Electronic energy + Delta-G solvation = -19271.676114 eV Core-core repulsion = 16075.253228 eV Total energy + Delta-G solvation = -3196.422885 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.12952 -40.77011 -37.58749 -36.17829 -35.86032 -33.79813 -31.88725 -31.47002 -29.29364 -27.04304 -25.22847 -24.00905 -22.63848 -22.60086 -21.65145 -20.75496 -19.43492 -19.13866 -17.79759 -17.25392 -16.91504 -16.53317 -16.47633 -15.89855 -15.46723 -15.38055 -15.33034 -15.12327 -14.59541 -14.38885 -13.92545 -13.67974 -13.32168 -12.98010 -12.85133 -12.61246 -12.54333 -12.44021 -12.07904 -12.04112 -11.96098 -11.78917 -11.28267 -10.95482 -10.68267 -10.26512 -9.15065 -9.01652 -8.63401 -7.96246 -5.25530 -0.52929 0.40900 0.94443 1.35748 1.48162 1.49000 1.59396 1.71996 1.87301 2.11554 2.27806 2.56579 3.37633 3.66452 3.74126 3.94572 4.06646 4.16074 4.21890 4.26523 4.42924 4.56118 4.68639 4.71655 4.74849 4.87267 4.97317 5.05299 5.21396 5.30623 5.32506 5.49622 5.55090 5.78781 6.26401 6.34092 6.60806 7.00077 7.32826 8.07451 8.31327 9.27522 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.044406 B = 0.002249 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.395072 B =12444.332863 C =13048.954333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.248 4.248 8 H 0.076 0.924 9 N -0.747 5.747 10 C 0.153 3.847 11 C -0.121 4.121 12 C 0.134 3.866 13 N -0.714 5.714 14 C 0.591 3.409 15 O -0.573 6.573 16 C -0.271 4.271 17 C -0.021 4.021 18 C -0.006 4.006 19 N -0.546 5.546 20 H 0.435 0.565 21 C 0.092 3.908 22 C -0.201 4.201 23 C -0.197 4.197 24 S 0.173 5.827 25 H 0.252 0.748 26 H 0.376 0.624 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.409 0.591 34 H 0.150 0.850 35 H 0.227 0.773 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.299 -32.559 0.060 33.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.380 4.380 8 H 0.094 0.906 9 N -0.390 5.390 10 C 0.026 3.974 11 C -0.159 4.159 12 C 0.010 3.990 13 N -0.364 5.364 14 C 0.379 3.621 15 O -0.455 6.455 16 C -0.391 4.391 17 C -0.058 4.058 18 C -0.119 4.119 19 N -0.148 5.148 20 H 0.276 0.724 21 C -0.044 4.044 22 C -0.230 4.230 23 C -0.320 4.320 24 S 0.436 5.564 25 H 0.061 0.939 26 H 0.208 0.792 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.245 0.755 34 H 0.167 0.833 35 H 0.243 0.757 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.097 -31.420 0.053 32.006 hybrid contribution 0.919 -0.153 0.006 0.931 sum -5.179 -31.573 0.060 31.995 Atomic orbital electron populations 1.69814 1.06576 1.26125 1.59429 1.25612 0.96510 1.01225 1.03605 0.85037 0.78187 0.79575 0.76737 1.19095 1.21884 1.21895 1.19693 0.91599 0.85357 1.41303 0.90607 1.42557 1.05761 1.01180 1.89542 1.20669 0.93973 0.84560 0.98190 1.21728 0.98630 0.92182 1.03352 1.21201 0.91427 0.83808 1.02590 1.45790 1.11101 1.04992 1.74559 1.17090 0.87002 0.82368 0.75686 1.90805 1.16995 1.85146 1.52517 1.23515 0.98258 0.96406 1.20885 1.19352 0.99244 0.89679 0.97527 1.17967 0.93321 0.85653 1.14988 1.42045 1.08422 1.03830 1.60513 0.72408 1.22701 0.80950 1.01030 0.99695 1.20575 0.99230 0.89244 1.13935 1.23631 0.98529 0.97570 1.12310 1.83644 0.96791 0.99823 1.76147 0.93897 0.79242 0.95762 0.95774 0.90714 0.90729 0.91264 0.91239 0.75480 0.83284 0.75677 0.81858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.71 13.06 21.65 0.28 -59.43 16 2 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 3 Si 0.98 46.66 29.55 68.60 2.03 48.68 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 7 C -0.25 -14.11 9.99 84.03 0.84 -13.27 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.75 -38.57 5.60 -343.44 -1.92 -40.49 16 10 C 0.15 6.13 6.26 86.38 0.54 6.67 16 11 C -0.12 -3.73 5.44 30.59 0.17 -3.56 16 12 C 0.13 3.75 5.67 86.38 0.49 4.24 16 13 N -0.71 -18.48 5.55 -467.31 -2.59 -21.07 16 14 C 0.59 17.09 7.77 86.37 0.67 17.76 16 15 O -0.57 -20.34 16.77 -4.45 -0.07 -20.41 16 16 C -0.27 -6.58 6.38 23.83 0.15 -6.43 16 17 C -0.02 -0.47 9.88 21.85 0.22 -0.25 16 18 C -0.01 -0.11 7.67 38.03 0.29 0.18 16 19 N -0.55 -5.18 6.21 -188.39 -1.17 -6.35 16 20 H 0.44 1.36 8.96 -92.71 -0.83 0.53 16 21 C 0.09 0.59 11.85 83.16 0.99 1.58 16 22 C -0.20 -2.48 10.85 22.25 0.24 -2.24 16 23 C -0.20 -3.69 7.31 23.11 0.17 -3.52 16 24 S 0.17 3.45 22.29 -56.49 -1.26 2.19 16 25 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 26 H 0.38 20.29 7.67 -92.71 -0.71 19.58 16 27 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.41 8.94 7.53 -92.71 -0.70 8.24 16 34 H 0.15 3.07 8.00 -2.91 -0.02 3.04 16 35 H 0.23 -0.77 8.06 -2.91 -0.02 -0.80 16 36 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -76.13 328.21 -0.58 -76.71 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -1.10 Total: 23.05 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 5.23 Total: -2.87 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -5.40 Total: -127.34 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.07 Total: -20.41 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.26 Total: 2.19 kcal Total: -76.13 -0.58 -76.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174698769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.047 kcal (2) G-P(sol) polarization free energy of solvation -76.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds