Wall clock time and date at job start Tue Mar 31 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86807 * 119.99979 * 2 1 4 4 H 1.48491 * 109.46909 * 270.00075 * 3 2 1 5 5 H 1.48497 * 109.46988 * 30.00168 * 3 2 1 6 6 H 1.48496 * 109.46720 * 150.00050 * 3 2 1 7 7 C 1.39932 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99632 * 197.84282 * 7 2 1 9 9 C 1.41434 * 120.00288 * 17.83774 * 7 2 1 10 10 C 1.40792 * 120.17982 * 204.42954 * 9 7 2 11 11 C 1.37712 * 120.04734 * 179.97438 * 10 9 7 12 12 C 1.38368 * 120.41287 * 0.02562 * 11 10 9 13 13 C 1.39907 * 120.35956 * 359.97438 * 12 11 10 14 14 C 1.47828 * 120.02796 * 180.02562 * 13 12 11 15 15 O 1.21520 * 119.99718 * 179.97438 * 14 13 12 16 16 N 1.34779 * 120.00024 * 359.97438 * 14 13 12 17 17 C 1.38117 * 119.99803 * 179.97438 * 16 14 13 18 18 N 1.30308 * 119.99999 * 0.02562 * 17 16 14 19 19 S 1.76201 * 119.99858 * 179.97438 * 17 16 14 20 20 C 1.81002 * 99.99725 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.46842 * 180.02562 * 20 19 17 22 22 N 1.46896 * 109.47156 * 179.97438 * 21 20 19 23 23 C 1.39065 * 119.94040 * 0.02562 * 13 12 11 24 24 H 0.97005 * 119.99871 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.97136 * 359.97438 * 10 9 7 26 26 H 1.07997 * 119.79371 * 179.97438 * 11 10 9 27 27 H 1.08007 * 119.81594 * 180.02562 * 12 11 10 28 28 H 0.97004 * 119.99785 * 0.02562 * 16 14 13 29 29 H 0.96995 * 119.99975 * 180.02562 * 18 17 16 30 30 H 1.08997 * 109.47394 * 299.99699 * 20 19 17 31 31 H 1.08997 * 109.47170 * 60.00508 * 20 19 17 32 32 H 1.09000 * 109.47321 * 300.00153 * 21 20 19 33 33 H 1.09003 * 109.47289 * 60.00206 * 21 20 19 34 34 H 1.00903 * 111.00232 * 179.97438 * 22 21 20 35 35 H 1.00904 * 111.00122 * 303.95171 * 22 21 20 36 36 H 1.07997 * 120.20112 * 179.72527 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4398 2.6527 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2861 9 6 1.3518 -2.4071 -0.3763 10 6 1.8265 -3.6500 0.0843 11 6 1.1852 -4.8121 -0.2828 12 6 0.0730 -4.7687 -1.1049 13 6 -0.4133 -3.5431 -1.5725 14 6 -1.6023 -3.5052 -2.4500 15 8 -2.0246 -2.4403 -2.8555 16 7 -2.2181 -4.6518 -2.8004 17 6 -3.3293 -4.6164 -3.6198 18 7 -3.7821 -3.4745 -4.0546 19 16 -4.1339 -6.1154 -4.0784 20 6 -5.4631 -5.4545 -5.1142 21 6 -6.3200 -6.6072 -5.6412 22 7 -7.3991 -6.0708 -6.4813 23 6 0.2229 -2.3605 -1.2110 24 1 -0.4850 0.8401 0.0004 25 1 2.6942 -3.6920 0.7260 26 1 1.5530 -5.7633 0.0725 27 1 -0.4227 -5.6861 -1.3865 28 1 -1.8812 -5.5018 -2.4764 29 1 -4.5627 -3.4495 -4.6298 30 1 -6.0840 -4.7815 -4.5229 31 1 -5.0323 -4.9084 -5.9534 32 1 -5.6994 -7.2806 -6.2323 33 1 -6.7508 -7.1530 -4.8017 34 1 -7.9795 -6.8132 -6.8421 35 1 -7.9502 -5.3946 -5.9741 36 1 -0.1463 -1.4124 -1.5731 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188688254.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:50 Heat of formation + Delta-G solvation = 16.022001 kcal Electronic energy + Delta-G solvation = -19923.156905 eV Core-core repulsion = 16726.763665 eV Total energy + Delta-G solvation = -3196.393240 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.71440 -37.29387 -35.99783 -35.49955 -33.83479 -32.77742 -30.17712 -29.50960 -29.35003 -25.47584 -24.33364 -23.00926 -21.48532 -20.97275 -19.84608 -18.54018 -17.47978 -16.54365 -16.27436 -15.98872 -15.59941 -15.12314 -15.06222 -14.66469 -14.64204 -13.95332 -13.70474 -13.25161 -12.82771 -12.73429 -12.56403 -12.34137 -11.97492 -11.65257 -11.42221 -11.19520 -11.11528 -10.76971 -10.53303 -10.13629 -9.75542 -9.59198 -9.28995 -9.25207 -9.04374 -8.56323 -8.20552 -7.70408 -7.57816 -6.83870 -4.45415 0.84327 1.83055 1.83085 2.39184 2.78322 3.06610 3.09963 3.13664 3.41071 3.85393 3.90106 4.09099 4.27620 4.42897 4.59546 4.89380 5.12287 5.19946 5.32471 5.55031 5.70807 6.00338 6.20513 6.49567 6.54331 6.67175 6.85066 6.92721 6.94902 7.16136 7.31399 7.37872 7.64889 7.74786 7.90044 8.08082 8.15276 8.45096 8.74822 8.77693 8.80983 10.10782 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.027256 B = 0.003213 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.043135 B = 8712.994237 C = 9647.881524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.083 0.917 9 C 0.099 3.901 10 C -0.210 4.210 11 C -0.094 4.094 12 C -0.222 4.222 13 C -0.125 4.125 14 C 0.556 3.444 15 O -0.466 6.466 16 N -0.644 5.644 17 C 0.409 3.591 18 N -0.672 5.672 19 S -0.167 6.167 20 C -0.105 4.105 21 C 0.082 3.918 22 N -0.847 5.847 23 C -0.090 4.090 24 H 0.286 0.714 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.418 0.582 29 H 0.340 0.660 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.349 0.651 35 H 0.344 0.656 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.229 -11.552 -7.255 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.096 3.904 10 C -0.230 4.230 11 C -0.113 4.113 12 C -0.242 4.242 13 C -0.129 4.129 14 C 0.343 3.657 15 O -0.334 6.334 16 N -0.297 5.297 17 C 0.016 3.984 18 N -0.309 5.309 19 S 0.057 5.943 20 C -0.255 4.255 21 C -0.050 4.050 22 N -0.379 5.379 23 C -0.110 4.110 24 H 0.097 0.903 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.108 0.892 28 H 0.256 0.744 29 H 0.160 0.840 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.163 0.837 35 H 0.156 0.844 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.565 -10.401 -7.551 16.021 hybrid contribution -1.053 0.366 0.308 1.156 sum -10.617 -10.036 -7.243 16.307 Atomic orbital electron populations 1.69784 1.07602 1.29933 1.33179 1.25988 0.94792 1.01651 0.92283 0.86248 0.80347 0.80323 0.79500 1.19092 1.20192 1.18532 1.19612 0.98275 0.90997 1.39716 0.89926 1.17598 0.91092 0.92560 0.89131 1.21113 1.03477 0.92697 1.05709 1.20429 0.95842 0.96843 0.98137 1.20325 1.01597 0.94364 1.07893 1.19347 0.96037 0.95647 1.01876 1.19182 0.83606 0.82490 0.80378 1.90813 1.63235 1.28511 1.50855 1.43696 1.26301 1.12208 1.47524 1.24135 0.90993 0.90626 0.92675 1.69517 1.19853 1.21658 1.19839 1.86056 1.33562 1.13561 1.61140 1.23641 0.97943 1.02362 1.01542 1.21359 0.93263 0.94391 0.96001 1.58639 1.17192 1.20299 1.41772 1.21638 0.96416 0.96286 0.96622 0.90317 0.88467 0.88688 0.89236 0.74373 0.83995 0.89096 0.88009 0.89547 0.94000 0.83705 0.84358 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.62 10.96 55.55 0.61 -20.01 16 2 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 18.73 29.60 -169.99 -5.03 13.70 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.87 9.05 -37.73 -0.34 -12.21 16 8 H 0.08 2.03 7.91 -52.48 -0.41 1.62 16 9 C 0.10 2.58 5.57 -106.87 -0.60 1.98 16 10 C -0.21 -4.88 9.78 -38.81 -0.38 -5.26 16 11 C -0.09 -1.96 10.01 -39.73 -0.40 -2.35 16 12 C -0.22 -4.54 9.55 -38.91 -0.37 -4.91 16 13 C -0.13 -2.93 5.87 -105.04 -0.62 -3.54 16 14 C 0.56 12.42 7.73 -12.34 -0.10 12.32 16 15 O -0.47 -12.04 14.59 5.35 0.08 -11.96 16 16 N -0.64 -11.28 5.32 -12.74 -0.07 -11.35 16 17 C 0.41 6.62 8.11 -87.65 -0.71 5.90 16 18 N -0.67 -12.12 11.54 30.83 0.36 -11.77 16 19 S -0.17 -1.90 22.24 -107.50 -2.39 -4.29 16 20 C -0.11 -0.94 4.57 37.16 0.17 -0.77 16 21 C 0.08 0.57 6.79 -3.83 -0.03 0.54 16 22 N -0.85 -5.13 9.62 -10.37 -0.10 -5.22 16 23 C -0.09 -2.37 8.23 -38.43 -0.32 -2.68 16 24 H 0.29 6.96 8.30 -40.82 -0.34 6.62 16 25 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 26 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 27 H 0.09 1.48 6.38 -52.48 -0.33 1.15 16 28 H 0.42 6.07 6.77 -40.82 -0.28 5.79 16 29 H 0.34 5.00 6.02 -40.82 -0.25 4.76 16 30 H 0.09 0.79 7.67 -51.92 -0.40 0.39 16 31 H 0.10 0.98 7.67 -51.92 -0.40 0.58 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.35 1.47 9.08 -39.29 -0.36 1.12 16 35 H 0.34 1.75 8.99 -39.29 -0.35 1.40 16 36 H 0.13 3.86 5.75 -52.49 -0.30 3.56 16 LS Contribution 322.50 15.07 4.86 4.86 Total: -1.00 -31.09 322.50 -9.36 -40.45 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -3.91 Total: 14.84 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -3.77 Total: -9.26 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.80 Total: -48.35 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.96 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Atomic # 16 Polarization: -1.90 SS G_CDS: -2.39 Total: -4.29 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.09 -9.36 -40.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188688254.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.474 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds