Wall clock time and date at job start Tue Mar 31 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86807 * 119.99979 * 2 1 4 4 H 1.48491 * 109.46909 * 270.00075 * 3 2 1 5 5 H 1.48497 * 109.46988 * 30.00168 * 3 2 1 6 6 H 1.48496 * 109.46720 * 150.00050 * 3 2 1 7 7 C 1.39932 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99632 * 197.84282 * 7 2 1 9 9 C 1.41434 * 120.00288 * 17.83774 * 7 2 1 10 10 C 1.40792 * 120.17982 * 204.42954 * 9 7 2 11 11 C 1.37712 * 120.04734 * 179.97438 * 10 9 7 12 12 C 1.38368 * 120.41287 * 0.02562 * 11 10 9 13 13 C 1.39907 * 120.35956 * 359.97438 * 12 11 10 14 14 C 1.47828 * 120.02796 * 180.02562 * 13 12 11 15 15 O 1.21520 * 119.99718 * 179.97438 * 14 13 12 16 16 N 1.34779 * 120.00024 * 359.97438 * 14 13 12 17 17 C 1.38117 * 119.99803 * 179.97438 * 16 14 13 18 18 N 1.30308 * 119.99999 * 0.02562 * 17 16 14 19 19 S 1.76201 * 119.99858 * 179.97438 * 17 16 14 20 20 C 1.81002 * 99.99725 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.46842 * 180.02562 * 20 19 17 22 22 N 1.46896 * 109.47156 * 179.97438 * 21 20 19 23 23 C 1.39065 * 119.94040 * 0.02562 * 13 12 11 24 24 H 0.97005 * 119.99871 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.97136 * 359.97438 * 10 9 7 26 26 H 1.07997 * 119.79371 * 179.97438 * 11 10 9 27 27 H 1.08007 * 119.81594 * 180.02562 * 12 11 10 28 28 H 0.97004 * 119.99785 * 0.02562 * 16 14 13 29 29 H 0.96995 * 119.99975 * 180.02562 * 18 17 16 30 30 H 1.08997 * 109.47394 * 299.99699 * 20 19 17 31 31 H 1.08997 * 109.47170 * 60.00508 * 20 19 17 32 32 H 1.09000 * 109.47321 * 300.00153 * 21 20 19 33 33 H 1.09003 * 109.47289 * 60.00206 * 21 20 19 34 34 H 1.00903 * 111.00232 * 179.97438 * 22 21 20 35 35 H 1.00904 * 111.00122 * 303.95171 * 22 21 20 36 36 H 1.07997 * 120.20112 * 179.72527 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4398 2.6527 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2861 9 6 1.3518 -2.4071 -0.3763 10 6 1.8265 -3.6500 0.0843 11 6 1.1852 -4.8121 -0.2828 12 6 0.0730 -4.7687 -1.1049 13 6 -0.4133 -3.5431 -1.5725 14 6 -1.6023 -3.5052 -2.4500 15 8 -2.0246 -2.4403 -2.8555 16 7 -2.2181 -4.6518 -2.8004 17 6 -3.3293 -4.6164 -3.6198 18 7 -3.7821 -3.4745 -4.0546 19 16 -4.1339 -6.1154 -4.0784 20 6 -5.4631 -5.4545 -5.1142 21 6 -6.3200 -6.6072 -5.6412 22 7 -7.3991 -6.0708 -6.4813 23 6 0.2229 -2.3605 -1.2110 24 1 -0.4850 0.8401 0.0004 25 1 2.6942 -3.6920 0.7260 26 1 1.5530 -5.7633 0.0725 27 1 -0.4227 -5.6861 -1.3865 28 1 -1.8812 -5.5018 -2.4764 29 1 -4.5627 -3.4495 -4.6298 30 1 -6.0840 -4.7815 -4.5229 31 1 -5.0323 -4.9084 -5.9534 32 1 -5.6994 -7.2806 -6.2323 33 1 -6.7508 -7.1530 -4.8017 34 1 -7.9795 -6.8132 -6.8421 35 1 -7.9502 -5.3946 -5.9741 36 1 -0.1463 -1.4124 -1.5731 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188688254.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:49 Heat of formation + Delta-G solvation = -6.336590 kcal Electronic energy + Delta-G solvation = -19924.126446 eV Core-core repulsion = 16726.763665 eV Total energy + Delta-G solvation = -3197.362781 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.35833 -39.04170 -37.15549 -36.48879 -35.64857 -34.23621 -31.90912 -31.28426 -30.09605 -27.32484 -25.93398 -23.70678 -23.06681 -22.71033 -21.40605 -20.07419 -18.96200 -17.75813 -17.56118 -16.99238 -16.77208 -16.68119 -16.32681 -16.32482 -15.70989 -15.60837 -15.08277 -14.55342 -14.44041 -14.29695 -13.87662 -13.47502 -13.29527 -12.97444 -12.83206 -12.71720 -12.55050 -12.34521 -12.18775 -11.90451 -11.52403 -11.18154 -11.09449 -10.49905 -9.98252 -9.75136 -9.52886 -9.40789 -9.17108 -8.67989 -6.39075 -0.21221 0.18394 0.89166 0.90697 1.01468 1.36034 1.48101 1.50443 2.03583 2.13184 2.18860 2.77092 3.52891 3.62916 3.65221 3.68055 3.85741 4.19860 4.30255 4.42431 4.56601 4.59431 4.74850 4.88944 5.06182 5.13756 5.20908 5.30979 5.48765 5.79708 5.88724 6.01536 6.06760 6.08693 6.28194 6.49126 6.57150 6.80019 6.86971 6.92838 7.22212 8.28631 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.027256 B = 0.003213 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.043135 B = 8712.994237 C = 9647.881524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.028 3.972 3 Si 0.982 3.018 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.249 1.249 7 C -0.494 4.494 8 H 0.086 0.914 9 C 0.066 3.934 10 C -0.212 4.212 11 C -0.092 4.092 12 C -0.197 4.197 13 C -0.136 4.136 14 C 0.556 3.444 15 O -0.513 6.513 16 N -0.631 5.631 17 C 0.389 3.611 18 N -0.716 5.716 19 S -0.106 6.106 20 C -0.110 4.110 21 C 0.088 3.912 22 N -0.854 5.854 23 C -0.129 4.129 24 H 0.286 0.714 25 H 0.111 0.889 26 H 0.143 0.857 27 H 0.140 0.860 28 H 0.433 0.567 29 H 0.353 0.647 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.361 0.639 35 H 0.349 0.651 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.631 -14.695 -7.542 19.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.187 4.187 3 Si 0.803 3.197 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.172 1.172 7 C -0.524 4.524 8 H 0.104 0.896 9 C 0.064 3.936 10 C -0.232 4.232 11 C -0.110 4.110 12 C -0.217 4.217 13 C -0.140 4.140 14 C 0.344 3.656 15 O -0.384 6.384 16 N -0.285 5.285 17 C -0.002 4.002 18 N -0.354 5.354 19 S 0.119 5.881 20 C -0.260 4.260 21 C -0.045 4.045 22 N -0.388 5.388 23 C -0.149 4.149 24 H 0.097 0.903 25 H 0.129 0.871 26 H 0.161 0.839 27 H 0.157 0.843 28 H 0.275 0.725 29 H 0.174 0.826 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.176 0.824 35 H 0.163 0.837 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.979 -13.628 -7.841 18.623 hybrid contribution -1.074 1.025 0.295 1.514 sum -11.054 -12.604 -7.546 18.384 Atomic orbital electron populations 1.69891 1.09259 1.30602 1.35265 1.26865 0.95395 1.05018 0.91374 0.85195 0.79343 0.75847 0.79330 1.19254 1.19513 1.17169 1.19876 0.98648 0.92114 1.41722 0.89586 1.17947 0.91682 0.94095 0.89870 1.21444 1.03808 0.92652 1.05273 1.20944 0.95115 0.97888 0.97072 1.20883 1.00670 0.94857 1.05271 1.19610 0.96375 0.95969 1.02027 1.19082 0.83441 0.83151 0.79932 1.90789 1.64502 1.30570 1.52579 1.43321 1.26521 1.11298 1.47361 1.24393 0.90583 0.93207 0.92040 1.69518 1.20965 1.24310 1.20624 1.85859 1.32968 1.08615 1.60662 1.23829 0.97622 1.03408 1.01127 1.21295 0.93284 0.93404 0.96481 1.58612 1.17485 1.20997 1.41735 1.21431 0.98305 0.96240 0.98965 0.90348 0.87075 0.83899 0.84277 0.72549 0.82605 0.88661 0.88549 0.89334 0.92974 0.82382 0.83732 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.46 10.96 21.82 0.24 -46.22 16 2 C 0.03 1.50 5.14 85.25 0.44 1.94 16 3 Si 0.98 40.00 29.60 68.60 2.03 42.03 16 4 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 7 C -0.49 -26.81 9.05 23.47 0.21 -26.60 16 8 H 0.09 4.38 7.91 -2.91 -0.02 4.36 16 9 C 0.07 3.58 5.57 -21.32 -0.12 3.46 16 10 C -0.21 -9.67 9.78 22.77 0.22 -9.45 16 11 C -0.09 -3.52 10.01 22.18 0.22 -3.29 16 12 C -0.20 -7.49 9.55 22.71 0.22 -7.27 16 13 C -0.14 -6.40 5.87 -20.14 -0.12 -6.52 16 14 C 0.56 25.21 7.73 86.78 0.67 25.88 16 15 O -0.51 -27.77 14.59 -3.78 -0.06 -27.83 16 16 N -0.63 -21.24 5.32 -312.52 -1.66 -22.91 16 17 C 0.39 12.14 8.11 179.31 1.45 13.59 16 18 N -0.72 -25.96 11.54 -56.38 -0.65 -26.61 16 19 S -0.11 -2.10 22.24 -56.49 -1.26 -3.35 16 20 C -0.11 -1.73 4.57 71.98 0.33 -1.40 16 21 C 0.09 0.97 6.79 86.30 0.59 1.55 16 22 N -0.85 -8.32 9.62 -186.72 -1.80 -10.12 16 23 C -0.13 -7.16 8.23 23.01 0.19 -6.97 16 24 H 0.29 14.93 8.30 -92.70 -0.77 14.16 16 25 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 26 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 27 H 0.14 3.86 6.38 -2.91 -0.02 3.84 16 28 H 0.43 11.20 6.77 -92.71 -0.63 10.57 16 29 H 0.35 10.37 6.02 -92.71 -0.56 9.81 16 30 H 0.09 1.47 7.67 -2.40 -0.02 1.45 16 31 H 0.10 1.69 7.67 -2.40 -0.02 1.67 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.36 2.16 9.08 -89.69 -0.81 1.34 16 35 H 0.35 2.81 8.99 -89.69 -0.81 2.00 16 36 H 0.10 6.11 5.75 -2.91 -0.02 6.09 16 Total: -1.00 -72.88 322.50 -0.48 -73.37 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: -1.64 Total: 36.71 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 4.30 Total: -15.07 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -3.87 Total: -105.86 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.06 Total: -27.83 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -1.26 Total: -3.35 kcal Total: -72.88 -0.48 -73.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188688254.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.031 kcal (2) G-P(sol) polarization free energy of solvation -72.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds