Wall clock time and date at job start Tue Mar 31 2020 06:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39407 * 119.67177 * 163.52392 * 3 2 1 5 5 C 1.39678 * 118.89136 * 180.25112 * 4 3 2 6 6 C 1.48118 * 120.88143 * 179.72170 * 5 4 3 7 7 O 1.21524 * 119.99784 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00051 * 180.02562 * 6 5 4 9 9 C 1.39844 * 120.00058 * 174.86699 * 8 6 5 10 10 C 1.39322 * 119.95016 * 146.35425 * 9 8 6 11 11 C 1.38478 * 120.42421 * 179.97438 * 10 9 8 12 12 C 1.37689 * 120.32973 * 0.02562 * 11 10 9 13 13 C 1.40748 * 119.88398 * 359.97438 * 12 11 10 14 14 C 1.41409 * 120.20393 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99802 * 151.80118 * 14 13 12 16 16 C 1.39926 * 120.00312 * 331.79190 * 14 13 12 17 17 N 1.30831 * 120.00185 * 349.00371 * 16 14 13 18 18 Si 1.86798 * 120.00090 * 168.99654 * 16 14 13 19 19 H 1.48502 * 109.47336 * 60.00323 * 18 16 14 20 20 H 1.48501 * 109.47497 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.47345 * 300.00601 * 18 16 14 22 22 C 1.38263 * 119.95146 * 326.07441 * 9 8 6 23 23 C 1.39889 * 118.23627 * 359.48530 * 5 4 3 24 24 C 1.38389 * 119.21901 * 0.55296 * 23 5 4 25 25 N 1.31536 * 121.05313 * 359.68484 * 24 23 5 26 26 H 1.08002 * 120.55201 * 359.96913 * 4 3 2 27 27 H 0.97014 * 120.00214 * 354.86309 * 8 6 5 28 28 H 1.07997 * 119.78490 * 359.97438 * 10 9 8 29 29 H 1.07999 * 119.83567 * 180.02562 * 11 10 9 30 30 H 1.07999 * 120.05828 * 179.97438 * 12 11 10 31 31 H 0.96997 * 120.00208 * 179.97438 * 17 16 14 32 32 H 1.08000 * 120.15958 * 359.97438 * 22 9 8 33 33 H 1.07999 * 120.39156 * 180.26014 * 23 5 4 34 34 H 1.07998 * 119.47205 * 179.70397 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2576 1.1625 -0.3435 5 6 4.6543 1.1434 -0.3433 6 6 5.4312 2.3508 -0.7070 7 8 4.8538 3.3759 -1.0114 8 7 6.7783 2.3124 -0.7013 9 6 7.5113 3.4168 -1.1471 10 6 8.7361 3.7226 -0.5578 11 6 9.4703 4.8135 -0.9919 12 6 8.9970 5.6089 -2.0113 13 6 7.7612 5.3123 -2.6162 14 6 7.2685 6.1250 -3.6633 15 1 6.6162 5.7027 -4.4134 16 6 7.6258 7.4763 -3.7276 17 7 8.2325 8.0414 -2.7155 18 14 7.2368 8.4735 -5.2585 19 1 5.7693 8.4794 -5.4858 20 1 7.7154 9.8674 -5.0763 21 1 7.9168 7.8664 -6.4309 22 6 7.0220 4.2002 -2.1760 23 6 5.2998 -0.0450 0.0144 24 6 4.5401 -1.1544 0.3417 25 7 3.2257 -1.1051 0.3269 26 1 2.7209 2.0610 -0.6099 27 1 7.2397 1.5186 -0.3879 28 1 9.1154 3.1048 0.2427 29 1 10.4188 5.0416 -0.5286 30 1 9.5730 6.4589 -2.3461 31 1 8.4806 8.9781 -2.7602 32 1 6.0750 3.9612 -2.6369 33 1 6.3784 -0.0974 0.0305 34 1 5.0342 -2.0754 0.6138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191549220.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:02 Heat of formation + Delta-G solvation = 60.629346 kcal Electronic energy + Delta-G solvation = -21007.342962 eV Core-core repulsion = 17677.440090 eV Total energy + Delta-G solvation = -3329.902872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.05012 -39.53220 -37.29567 -36.79942 -34.71513 -33.47801 -32.83195 -32.00667 -29.90368 -28.38926 -25.61102 -25.36164 -24.51077 -22.20430 -21.08319 -20.53823 -19.11904 -17.92631 -17.49854 -16.59310 -15.99879 -15.53738 -15.39786 -15.20390 -14.81799 -14.71125 -14.46935 -14.08928 -13.56181 -13.25899 -13.14939 -13.05803 -12.90588 -12.35583 -12.23510 -11.81592 -11.38981 -11.16351 -10.80016 -10.57499 -10.47735 -10.31620 -10.15718 -9.88664 -9.69550 -9.65434 -9.26415 -9.02760 -7.51220 -7.03140 -6.72769 -4.41593 0.03475 0.43465 2.19946 2.24683 2.65236 2.79849 2.99850 3.06949 3.10216 3.15111 3.25085 3.32493 3.62773 3.93903 4.16475 4.31940 4.46167 4.52629 4.60955 4.71478 5.21025 5.30564 5.53897 5.62627 5.94118 6.14002 6.27274 6.54022 6.85343 6.93108 6.99586 7.02114 7.19588 7.24686 7.40851 7.60126 7.84905 7.98334 8.00965 8.13376 8.41956 8.60391 8.87122 8.89774 10.20874 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.020449 B = 0.003436 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.936012 B = 8147.628348 C = 9278.763062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C 0.269 3.731 3 C 0.187 3.813 4 C -0.064 4.064 5 C -0.073 4.073 6 C 0.543 3.457 7 O -0.496 6.496 8 N -0.654 5.654 9 C 0.145 3.855 10 C -0.256 4.256 11 C -0.093 4.093 12 C -0.165 4.165 13 C 0.119 3.881 14 C -0.457 4.457 15 H 0.077 0.923 16 C 0.074 3.926 17 N -0.799 5.799 18 Si 0.912 3.088 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.207 4.207 23 C -0.116 4.116 24 C 0.108 3.892 25 N -0.441 5.441 26 H 0.161 0.839 27 H 0.399 0.601 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.122 0.878 31 H 0.281 0.719 32 H 0.107 0.893 33 H 0.151 0.849 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.910 -13.734 4.820 14.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.062 5.062 2 C -0.048 4.048 3 C 0.050 3.950 4 C -0.087 4.087 5 C -0.084 4.084 6 C 0.329 3.671 7 O -0.369 6.369 8 N -0.298 5.298 9 C 0.053 3.947 10 C -0.277 4.277 11 C -0.113 4.113 12 C -0.184 4.184 13 C 0.116 3.884 14 C -0.487 4.487 15 H 0.095 0.905 16 C -0.143 4.143 17 N -0.425 5.425 18 Si 0.737 3.263 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.228 4.228 23 C -0.137 4.137 24 C -0.051 4.051 25 N -0.152 5.152 26 H 0.179 0.821 27 H 0.234 0.766 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.140 0.860 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.168 0.832 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.495 -13.493 4.880 14.768 hybrid contribution 1.049 0.816 -0.536 1.433 sum -2.446 -12.678 4.344 13.623 Atomic orbital electron populations 1.81264 1.11408 1.06557 1.06980 1.24840 0.91517 0.94048 0.94421 1.16193 0.86300 0.90681 1.01845 1.22196 0.93586 0.98740 0.94209 1.20491 0.93905 0.94812 0.99210 1.18013 0.82586 0.87169 0.79377 1.90896 1.69533 1.30930 1.45571 1.43271 1.05244 1.17763 1.63561 1.17384 0.92315 0.89021 0.95942 1.20044 0.98185 1.03415 1.06097 1.20493 0.98064 0.94929 0.97768 1.21450 0.96729 1.00972 0.99296 1.17495 0.89902 0.89932 0.91077 1.19532 1.26120 0.93699 1.09378 0.90504 1.25885 0.93111 0.98443 0.96876 1.69781 1.30643 1.13177 1.28925 0.86304 0.79894 0.78312 0.81835 1.18985 1.20326 1.18864 1.20980 1.01029 1.01174 0.99612 1.22698 1.02386 0.92685 0.95961 1.22772 0.87891 0.98667 0.95807 1.67406 1.10965 1.26248 1.10562 0.82143 0.76606 0.89124 0.88858 0.85974 0.90853 0.87509 0.83170 0.80699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.19 18.54 41.84 0.78 -4.41 16 2 C 0.27 3.16 15.53 -22.47 -0.35 2.81 16 3 C 0.19 1.96 6.58 -85.11 -0.56 1.40 16 4 C -0.06 -0.70 9.36 -38.61 -0.36 -1.06 16 5 C -0.07 -0.81 5.90 -104.69 -0.62 -1.42 16 6 C 0.54 8.57 7.53 -12.21 -0.09 8.48 16 7 O -0.50 -10.20 14.15 5.35 0.08 -10.13 16 8 N -0.65 -10.08 5.29 -10.69 -0.06 -10.14 16 9 C 0.14 3.00 6.26 -83.79 -0.52 2.47 16 10 C -0.26 -5.19 9.97 -39.09 -0.39 -5.58 16 11 C -0.09 -2.05 10.01 -39.69 -0.40 -2.45 16 12 C -0.16 -4.13 8.66 -38.83 -0.34 -4.47 16 13 C 0.12 3.13 5.55 -106.85 -0.59 2.54 16 14 C -0.46 -12.14 9.06 -37.74 -0.34 -12.48 16 15 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 16 C 0.07 1.85 5.25 -17.35 -0.09 1.76 16 17 N -0.80 -20.56 10.81 55.55 0.60 -19.96 16 18 Si 0.91 18.73 29.57 -169.99 -5.03 13.70 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 C -0.21 -5.03 8.39 -38.68 -0.32 -5.35 16 23 C -0.12 -0.84 9.62 -38.91 -0.37 -1.22 16 24 C 0.11 0.73 11.17 -17.62 -0.20 0.53 16 25 N -0.44 -4.24 10.25 -11.21 -0.11 -4.35 16 26 H 0.16 1.78 7.74 -52.49 -0.41 1.37 16 27 H 0.40 4.27 6.97 -40.81 -0.28 3.98 16 28 H 0.09 1.54 8.06 -52.49 -0.42 1.11 16 29 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.12 3.17 6.18 -52.49 -0.32 2.84 16 31 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 32 H 0.11 2.66 6.44 -52.49 -0.34 2.32 16 33 H 0.15 0.64 6.54 -52.49 -0.34 0.30 16 34 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 312.98 15.07 4.72 4.72 Total: -1.00 -31.42 312.98 -7.09 -38.51 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -2.51 Total: 6.12 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -5.55 Total: -14.06 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 1.20 Total: -38.87 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.42 -7.09 -38.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191549220.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.139 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds