Wall clock time and date at job start Tue Mar 31 2020 06:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39407 * 119.67177 * 163.52392 * 3 2 1 5 5 C 1.39678 * 118.89136 * 180.25112 * 4 3 2 6 6 C 1.48118 * 120.88143 * 179.72170 * 5 4 3 7 7 O 1.21524 * 119.99784 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00051 * 180.02562 * 6 5 4 9 9 C 1.39844 * 120.00058 * 174.86699 * 8 6 5 10 10 C 1.39322 * 119.95016 * 146.35425 * 9 8 6 11 11 C 1.38478 * 120.42421 * 179.97438 * 10 9 8 12 12 C 1.37689 * 120.32973 * 0.02562 * 11 10 9 13 13 C 1.40748 * 119.88398 * 359.97438 * 12 11 10 14 14 C 1.41409 * 120.20393 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99802 * 151.80118 * 14 13 12 16 16 C 1.39926 * 120.00312 * 331.79190 * 14 13 12 17 17 N 1.30831 * 120.00185 * 349.00371 * 16 14 13 18 18 Si 1.86798 * 120.00090 * 168.99654 * 16 14 13 19 19 H 1.48502 * 109.47336 * 60.00323 * 18 16 14 20 20 H 1.48501 * 109.47497 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.47345 * 300.00601 * 18 16 14 22 22 C 1.38263 * 119.95146 * 326.07441 * 9 8 6 23 23 C 1.39889 * 118.23627 * 359.48530 * 5 4 3 24 24 C 1.38389 * 119.21901 * 0.55296 * 23 5 4 25 25 N 1.31536 * 121.05313 * 359.68484 * 24 23 5 26 26 H 1.08002 * 120.55201 * 359.96913 * 4 3 2 27 27 H 0.97014 * 120.00214 * 354.86309 * 8 6 5 28 28 H 1.07997 * 119.78490 * 359.97438 * 10 9 8 29 29 H 1.07999 * 119.83567 * 180.02562 * 11 10 9 30 30 H 1.07999 * 120.05828 * 179.97438 * 12 11 10 31 31 H 0.96997 * 120.00208 * 179.97438 * 17 16 14 32 32 H 1.08000 * 120.15958 * 359.97438 * 22 9 8 33 33 H 1.07999 * 120.39156 * 180.26014 * 23 5 4 34 34 H 1.07998 * 119.47205 * 179.70397 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2576 1.1625 -0.3435 5 6 4.6543 1.1434 -0.3433 6 6 5.4312 2.3508 -0.7070 7 8 4.8538 3.3759 -1.0114 8 7 6.7783 2.3124 -0.7013 9 6 7.5113 3.4168 -1.1471 10 6 8.7361 3.7226 -0.5578 11 6 9.4703 4.8135 -0.9919 12 6 8.9970 5.6089 -2.0113 13 6 7.7612 5.3123 -2.6162 14 6 7.2685 6.1250 -3.6633 15 1 6.6162 5.7027 -4.4134 16 6 7.6258 7.4763 -3.7276 17 7 8.2325 8.0414 -2.7155 18 14 7.2368 8.4735 -5.2585 19 1 5.7693 8.4794 -5.4858 20 1 7.7154 9.8674 -5.0763 21 1 7.9168 7.8664 -6.4309 22 6 7.0220 4.2002 -2.1760 23 6 5.2998 -0.0450 0.0144 24 6 4.5401 -1.1544 0.3417 25 7 3.2257 -1.1051 0.3269 26 1 2.7209 2.0610 -0.6099 27 1 7.2397 1.5186 -0.3879 28 1 9.1154 3.1048 0.2427 29 1 10.4188 5.0416 -0.5286 30 1 9.5730 6.4589 -2.3461 31 1 8.4806 8.9781 -2.7602 32 1 6.0750 3.9612 -2.6369 33 1 6.3784 -0.0974 0.0305 34 1 5.0342 -2.0754 0.6138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191549220.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:01 Heat of formation + Delta-G solvation = 40.454211 kcal Electronic energy + Delta-G solvation = -21008.217821 eV Core-core repulsion = 17677.440090 eV Total energy + Delta-G solvation = -3330.777731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.00301 -40.75592 -38.95346 -37.76797 -36.30896 -34.99676 -33.92035 -32.78369 -31.73419 -30.00164 -27.26933 -26.46324 -25.44502 -23.42857 -22.76637 -21.98560 -20.33987 -19.54503 -18.43139 -17.74369 -17.23046 -16.84764 -16.70516 -16.50158 -16.28681 -15.81401 -15.69393 -15.15756 -14.92302 -14.65417 -14.43095 -14.12616 -14.04542 -13.90637 -13.59810 -13.12584 -13.08171 -12.82964 -12.58019 -12.22563 -12.03638 -11.60417 -11.41483 -11.19552 -11.10871 -10.87524 -10.65486 -10.35775 -9.35037 -8.73761 -8.57334 -6.37581 -0.74742 -0.37038 0.91354 1.01650 1.28995 1.36940 1.46824 1.48615 1.54261 1.92129 2.00609 2.22001 2.34976 2.73681 2.79947 3.37409 3.53108 3.68757 3.74336 3.74610 4.04750 4.48420 4.50252 4.59220 4.65179 4.81772 5.01022 5.11205 5.13515 5.21118 5.31839 5.35366 5.73794 5.84510 6.09725 6.12148 6.12469 6.35279 6.52114 6.55536 6.70263 6.95198 7.01233 7.18022 8.37581 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.020449 B = 0.003436 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.936012 B = 8147.628348 C = 9278.763062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.286 3.714 3 C 0.180 3.820 4 C -0.068 4.068 5 C -0.088 4.088 6 C 0.545 3.455 7 O -0.554 6.554 8 N -0.640 5.640 9 C 0.154 3.846 10 C -0.238 4.238 11 C -0.094 4.094 12 C -0.192 4.192 13 C 0.086 3.914 14 C -0.503 4.503 15 H 0.066 0.934 16 C 0.033 3.967 17 N -0.832 5.832 18 Si 0.982 3.018 19 H -0.267 1.267 20 H -0.264 1.264 21 H -0.257 1.257 22 C -0.231 4.231 23 C -0.084 4.084 24 C 0.124 3.876 25 N -0.450 5.450 26 H 0.146 0.854 27 H 0.426 0.574 28 H 0.140 0.860 29 H 0.124 0.876 30 H 0.104 0.896 31 H 0.287 0.713 32 H 0.087 0.913 33 H 0.192 0.808 34 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.888 -16.568 6.346 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.031 4.031 3 C 0.043 3.957 4 C -0.092 4.092 5 C -0.100 4.100 6 C 0.333 3.667 7 O -0.431 6.431 8 N -0.287 5.287 9 C 0.061 3.939 10 C -0.259 4.259 11 C -0.113 4.113 12 C -0.212 4.212 13 C 0.084 3.916 14 C -0.533 4.533 15 H 0.084 0.916 16 C -0.180 4.180 17 N -0.458 5.458 18 Si 0.803 3.197 19 H -0.192 1.192 20 H -0.188 1.188 21 H -0.181 1.181 22 C -0.253 4.253 23 C -0.105 4.105 24 C -0.036 4.036 25 N -0.161 5.161 26 H 0.163 0.837 27 H 0.266 0.734 28 H 0.158 0.842 29 H 0.142 0.858 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.209 0.791 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -1.693 -16.386 6.434 17.685 hybrid contribution 0.565 1.472 -0.852 1.792 sum -1.128 -14.914 5.581 15.964 Atomic orbital electron populations 1.81267 1.12515 1.07814 1.08534 1.25086 0.91826 0.92909 0.93262 1.15961 0.85499 0.90919 1.03280 1.22056 0.93900 0.98579 0.94618 1.20049 0.93327 0.94386 1.02189 1.18670 0.82537 0.87845 0.77613 1.90883 1.70594 1.33680 1.47960 1.43054 1.05146 1.17350 1.63102 1.17408 0.92695 0.89551 0.94236 1.20533 0.96997 1.02578 1.05814 1.20880 0.99306 0.94626 0.96484 1.21406 0.96723 1.01779 1.01290 1.17822 0.90911 0.91003 0.91889 1.19751 1.27905 0.95211 1.10464 0.91611 1.26679 0.92648 0.98871 0.99812 1.69839 1.31720 1.13745 1.30532 0.85263 0.79395 0.77152 0.77926 1.19176 1.18849 1.18118 1.20962 1.00579 1.02244 1.01517 1.23132 1.04353 0.90610 0.92379 1.23601 0.86609 0.99956 0.93445 1.67466 1.12634 1.25549 1.10422 0.83658 0.73356 0.84192 0.85796 0.87789 0.90261 0.89516 0.79131 0.75836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -11.64 18.54 19.00 0.35 -11.28 16 2 C 0.29 6.70 15.53 88.33 1.37 8.07 16 3 C 0.18 3.52 6.58 40.53 0.27 3.79 16 4 C -0.07 -1.45 9.36 22.90 0.21 -1.23 16 5 C -0.09 -1.76 5.90 -19.91 -0.12 -1.88 16 6 C 0.55 16.68 7.53 86.87 0.65 17.34 16 7 O -0.55 -23.72 14.15 -3.79 -0.05 -23.77 16 8 N -0.64 -17.95 5.29 -306.02 -1.62 -19.56 16 9 C 0.15 6.17 6.26 38.13 0.24 6.41 16 10 C -0.24 -8.85 9.97 22.59 0.23 -8.63 16 11 C -0.09 -3.99 10.01 22.20 0.22 -3.76 16 12 C -0.19 -9.90 8.66 22.75 0.20 -9.71 16 13 C 0.09 4.77 5.55 -21.31 -0.12 4.66 16 14 C -0.50 -28.46 9.06 23.46 0.21 -28.25 16 15 H 0.07 3.67 7.87 -2.91 -0.02 3.64 16 16 C 0.03 1.75 5.25 85.25 0.45 2.19 16 17 N -0.83 -44.58 10.81 21.82 0.24 -44.34 16 18 Si 0.98 39.84 29.57 68.60 2.03 41.86 16 19 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 20 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 21 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 22 C -0.23 -11.68 8.39 22.85 0.19 -11.49 16 23 C -0.08 -0.78 9.62 22.71 0.22 -0.56 16 24 C 0.12 0.98 11.17 84.77 0.95 1.93 16 25 N -0.45 -7.13 10.25 -189.39 -1.94 -9.07 16 26 H 0.15 3.47 7.74 -2.91 -0.02 3.45 16 27 H 0.43 6.89 6.97 -92.70 -0.65 6.25 16 28 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 29 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 30 H 0.10 5.65 6.18 -2.91 -0.02 5.63 16 31 H 0.29 13.91 8.30 -92.71 -0.77 13.15 16 32 H 0.09 4.63 6.44 -2.91 -0.02 4.61 16 33 H 0.19 0.21 6.54 -2.91 -0.02 0.19 16 34 H 0.23 -0.35 8.06 -2.91 -0.02 -0.37 16 Total: -1.00 -75.93 312.98 4.71 -71.22 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.53 Total: 16.08 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 5.17 Total: -21.13 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -2.97 Total: -84.26 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.05 Total: -23.77 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.86 kcal Total: -75.93 4.71 -71.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191549220.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.671 kcal (2) G-P(sol) polarization free energy of solvation -75.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds