Wall clock time and date at job start Tue Mar 31 2020 06:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39688 * 120.98996 * 355.55193 * 3 2 1 5 5 C 1.38199 * 119.13056 * 180.27273 * 4 3 2 6 6 N 1.31936 * 121.20566 * 359.74789 * 5 4 3 7 7 C 1.31669 * 122.20178 * 359.97438 * 6 5 4 8 8 C 1.39412 * 120.70942 * 0.02562 * 7 6 5 9 9 C 1.47752 * 120.63693 * 179.97438 * 8 7 6 10 10 O 1.21571 * 120.00258 * 179.97438 * 9 8 7 11 11 N 1.34779 * 119.99738 * 359.97438 * 9 8 7 12 12 C 1.39840 * 119.99658 * 174.88718 * 11 9 8 13 13 C 1.39318 * 119.95135 * 325.53253 * 12 11 9 14 14 C 1.38489 * 120.42273 * 179.76094 * 13 12 11 15 15 C 1.37678 * 120.32627 * 0.52334 * 14 13 12 16 16 C 1.40744 * 119.89354 * 359.74144 * 15 14 13 17 17 C 1.41404 * 120.21324 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99955 * 25.13047 * 17 16 15 19 19 C 1.39933 * 120.00304 * 205.12955 * 17 16 15 20 20 N 1.30832 * 119.99558 * 16.79339 * 19 17 16 21 21 Si 1.86795 * 120.00428 * 196.79771 * 19 17 16 22 22 H 1.48500 * 109.47025 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47472 * 119.99685 * 21 19 17 24 24 H 1.48500 * 109.47174 * 240.00077 * 21 19 17 25 25 C 1.38272 * 119.94828 * 145.81518 * 12 11 9 26 26 H 1.08005 * 120.43588 * 359.97438 * 4 3 2 27 27 H 1.08004 * 119.40311 * 179.76798 * 5 4 3 28 28 H 1.08003 * 119.64365 * 179.97438 * 7 6 5 29 29 H 0.96998 * 119.99881 * 354.88611 * 11 9 8 30 30 H 1.08000 * 119.78654 * 0.03034 * 13 12 11 31 31 H 1.08003 * 119.83301 * 180.24172 * 14 13 12 32 32 H 1.07999 * 120.05761 * 179.76115 * 15 14 13 33 33 H 0.97000 * 120.00015 * 179.97438 * 20 19 17 34 34 H 1.07990 * 120.16148 * 359.95471 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2877 -1.1929 0.0929 5 6 4.6690 -1.1472 0.0951 6 7 5.3151 -0.0002 0.0064 7 6 4.6873 1.1532 -0.0887 8 6 3.2942 1.2069 -0.0990 9 6 2.5914 2.5022 -0.2053 10 8 1.3762 2.5355 -0.2136 11 7 3.2976 3.6468 -0.2930 12 6 2.6370 4.8617 -0.5010 13 6 1.4899 4.9034 -1.2906 14 6 0.8252 6.1003 -1.4990 15 6 1.2973 7.2648 -0.9363 16 6 2.4580 7.2392 -0.1407 17 6 2.9485 8.4311 0.4409 18 1 2.2763 9.2539 0.6344 19 6 4.3049 8.5445 0.7658 20 7 5.1729 7.7126 0.2497 21 14 4.8762 9.8833 1.9365 22 1 3.7079 10.6868 2.3775 23 1 5.5255 9.2628 3.1191 24 1 5.8494 10.7649 1.2431 25 6 3.1265 6.0206 0.0726 26 1 2.7716 -2.1388 0.1668 27 1 5.2298 -2.0670 0.1705 28 1 5.2577 2.0677 -0.1588 29 1 4.2640 3.6279 -0.2119 30 1 1.1143 3.9958 -1.7395 31 1 -0.0654 6.1211 -2.1096 32 1 0.7776 8.1965 -1.1048 33 1 6.1131 7.7914 0.4746 34 1 4.0177 5.9901 0.6817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192975496.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:05 Heat of formation + Delta-G solvation = 59.202885 kcal Electronic energy + Delta-G solvation = -21449.901810 eV Core-core repulsion = 18119.937083 eV Total energy + Delta-G solvation = -3329.964728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.02932 -39.35017 -37.31592 -36.59305 -34.49427 -33.46304 -33.01125 -31.95026 -29.60521 -28.51819 -25.48139 -25.24764 -24.61370 -21.79352 -21.27637 -19.88744 -19.67816 -17.76594 -17.53397 -16.84366 -15.75937 -15.54708 -15.23980 -15.13891 -14.88272 -14.69272 -14.10659 -13.91367 -13.31148 -13.24683 -13.10242 -13.03616 -12.81629 -12.42556 -12.31728 -11.71503 -11.34746 -11.16540 -10.82526 -10.73157 -10.33736 -10.14859 -10.02426 -9.81931 -9.64756 -9.58578 -9.29605 -9.07009 -7.44904 -7.11750 -6.76734 -4.42751 0.06189 0.45540 2.48137 2.63030 2.76983 2.86729 3.04886 3.10161 3.14022 3.20755 3.30798 3.52322 3.71359 3.89803 3.91175 4.33996 4.43927 4.57827 4.63619 4.93536 5.15163 5.19623 5.55236 5.61511 6.00695 6.20619 6.53498 6.56594 6.77348 6.94719 6.99535 7.18077 7.39422 7.42610 7.49981 7.55726 7.84694 7.95544 8.01472 8.21386 8.38861 8.59774 8.82728 8.88032 10.13311 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019604 B = 0.004035 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.948416 B = 6938.168979 C = 8024.296991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C 0.247 3.753 3 C 0.080 3.920 4 C -0.136 4.136 5 C 0.123 3.877 6 N -0.469 5.469 7 C 0.141 3.859 8 C -0.139 4.139 9 C 0.545 3.455 10 O -0.506 6.506 11 N -0.649 5.649 12 C 0.141 3.859 13 C -0.225 4.225 14 C -0.085 4.085 15 C -0.225 4.225 16 C 0.120 3.880 17 C -0.462 4.462 18 H 0.079 0.921 19 C 0.077 3.923 20 N -0.799 5.799 21 Si 0.907 3.093 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.178 4.178 26 H 0.153 0.847 27 H 0.172 0.828 28 H 0.172 0.828 29 H 0.403 0.597 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.279 0.721 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.114 -14.589 0.479 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.048 5.048 2 C -0.070 4.070 3 C 0.069 3.931 4 C -0.158 4.158 5 C -0.034 4.034 6 N -0.177 5.177 7 C -0.017 4.017 8 C -0.147 4.147 9 C 0.330 3.670 10 O -0.381 6.381 11 N -0.293 5.293 12 C 0.050 3.950 13 C -0.246 4.246 14 C -0.104 4.104 15 C -0.244 4.244 16 C 0.117 3.883 17 C -0.492 4.492 18 H 0.097 0.903 19 C -0.140 4.140 20 N -0.425 5.425 21 Si 0.732 3.268 22 H -0.184 1.184 23 H -0.197 1.197 24 H -0.200 1.200 25 C -0.199 4.199 26 H 0.171 0.829 27 H 0.189 0.811 28 H 0.189 0.811 29 H 0.239 0.761 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.663 -14.620 0.455 15.078 hybrid contribution 0.439 0.660 0.501 0.938 sum 4.102 -13.960 0.956 14.581 Atomic orbital electron populations 1.81158 1.11661 1.07044 1.04893 1.24929 0.92039 0.94144 0.95847 1.16158 0.85751 0.93352 0.97886 1.22259 0.95653 0.97695 1.00214 1.23009 0.90980 0.96753 0.92625 1.67660 1.41005 0.98344 1.10731 1.23098 0.89728 0.97005 0.91861 1.21285 0.95471 0.93819 1.04136 1.17933 0.87384 0.83325 0.78371 1.90865 1.12799 1.86265 1.48218 1.43303 1.10238 1.05735 1.69981 1.17551 0.95198 0.83308 0.98981 1.20280 0.99588 0.97480 1.07232 1.20420 0.97946 0.92766 0.99247 1.21068 1.01956 0.96401 1.05016 1.17363 0.90097 0.92270 0.88561 1.19582 0.93508 1.00306 1.35775 0.90257 1.25873 0.96715 0.96807 0.94592 1.69808 1.03343 1.34587 1.34736 0.86275 0.79330 0.80851 0.80373 1.18416 1.19735 1.19993 1.21079 1.04087 0.90298 1.04432 0.82924 0.81070 0.81119 0.76118 0.88181 0.88954 0.88742 0.91003 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -6.41 18.49 41.83 0.77 -5.64 16 2 C 0.25 3.64 12.93 -22.47 -0.29 3.35 16 3 C 0.08 0.93 5.79 -106.32 -0.62 0.32 16 4 C -0.14 -1.00 9.85 -39.05 -0.38 -1.38 16 5 C 0.12 0.84 11.16 -17.52 -0.20 0.64 16 6 N -0.47 -4.42 10.32 -12.98 -0.13 -4.55 16 7 C 0.14 1.44 10.71 -17.18 -0.18 1.26 16 8 C -0.14 -1.77 5.92 -104.47 -0.62 -2.38 16 9 C 0.54 9.40 7.49 -12.37 -0.09 9.30 16 10 O -0.51 -10.73 12.25 5.30 0.06 -10.67 16 11 N -0.65 -11.51 5.28 -10.79 -0.06 -11.56 16 12 C 0.14 3.18 6.24 -83.79 -0.52 2.66 16 13 C -0.22 -5.27 8.66 -39.09 -0.34 -5.61 16 14 C -0.08 -1.97 10.01 -39.69 -0.40 -2.37 16 15 C -0.22 -5.51 9.79 -38.84 -0.38 -5.89 16 16 C 0.12 3.12 5.57 -106.85 -0.59 2.53 16 17 C -0.46 -11.91 9.05 -37.74 -0.34 -12.25 16 18 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 19 C 0.08 1.86 5.16 -17.34 -0.09 1.77 16 20 N -0.80 -19.37 10.94 55.55 0.61 -18.76 16 21 Si 0.91 18.05 29.59 -169.99 -5.03 13.02 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 25 C -0.18 -4.37 8.60 -38.67 -0.33 -4.70 16 26 H 0.15 0.66 8.06 -52.48 -0.42 0.23 16 27 H 0.17 0.53 8.06 -52.48 -0.42 0.11 16 28 H 0.17 1.44 6.43 -52.48 -0.34 1.10 16 29 H 0.40 5.73 6.90 -40.82 -0.28 5.45 16 30 H 0.10 2.34 6.47 -52.49 -0.34 2.00 16 31 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 32 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 33 H 0.28 6.11 8.30 -40.82 -0.34 5.78 16 34 H 0.12 3.05 6.17 -52.49 -0.32 2.73 16 LS Contribution 309.53 15.07 4.66 4.66 Total: -1.00 -31.75 309.53 -7.01 -38.76 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -2.52 Total: 7.50 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -5.38 Total: -12.76 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 1.19 Total: -40.52 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.06 Total: -10.67 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.75 -7.01 -38.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192975496.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.961 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds