Wall clock time and date at job start Tue Mar 31 2020 06:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39688 * 120.98996 * 355.55193 * 3 2 1 5 5 C 1.38199 * 119.13056 * 180.27273 * 4 3 2 6 6 N 1.31936 * 121.20566 * 359.74789 * 5 4 3 7 7 C 1.31669 * 122.20178 * 359.97438 * 6 5 4 8 8 C 1.39412 * 120.70942 * 0.02562 * 7 6 5 9 9 C 1.47752 * 120.63693 * 179.97438 * 8 7 6 10 10 O 1.21571 * 120.00258 * 179.97438 * 9 8 7 11 11 N 1.34779 * 119.99738 * 359.97438 * 9 8 7 12 12 C 1.39840 * 119.99658 * 174.88718 * 11 9 8 13 13 C 1.39318 * 119.95135 * 325.53253 * 12 11 9 14 14 C 1.38489 * 120.42273 * 179.76094 * 13 12 11 15 15 C 1.37678 * 120.32627 * 0.52334 * 14 13 12 16 16 C 1.40744 * 119.89354 * 359.74144 * 15 14 13 17 17 C 1.41404 * 120.21324 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99955 * 25.13047 * 17 16 15 19 19 C 1.39933 * 120.00304 * 205.12955 * 17 16 15 20 20 N 1.30832 * 119.99558 * 16.79339 * 19 17 16 21 21 Si 1.86795 * 120.00428 * 196.79771 * 19 17 16 22 22 H 1.48500 * 109.47025 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47472 * 119.99685 * 21 19 17 24 24 H 1.48500 * 109.47174 * 240.00077 * 21 19 17 25 25 C 1.38272 * 119.94828 * 145.81518 * 12 11 9 26 26 H 1.08005 * 120.43588 * 359.97438 * 4 3 2 27 27 H 1.08004 * 119.40311 * 179.76798 * 5 4 3 28 28 H 1.08003 * 119.64365 * 179.97438 * 7 6 5 29 29 H 0.96998 * 119.99881 * 354.88611 * 11 9 8 30 30 H 1.08000 * 119.78654 * 0.03034 * 13 12 11 31 31 H 1.08003 * 119.83301 * 180.24172 * 14 13 12 32 32 H 1.07999 * 120.05761 * 179.76115 * 15 14 13 33 33 H 0.97000 * 120.00015 * 179.97438 * 20 19 17 34 34 H 1.07990 * 120.16148 * 359.95471 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2877 -1.1929 0.0929 5 6 4.6690 -1.1472 0.0951 6 7 5.3151 -0.0002 0.0064 7 6 4.6873 1.1532 -0.0887 8 6 3.2942 1.2069 -0.0990 9 6 2.5914 2.5022 -0.2053 10 8 1.3762 2.5355 -0.2136 11 7 3.2976 3.6468 -0.2930 12 6 2.6370 4.8617 -0.5010 13 6 1.4899 4.9034 -1.2906 14 6 0.8252 6.1003 -1.4990 15 6 1.2973 7.2648 -0.9363 16 6 2.4580 7.2392 -0.1407 17 6 2.9485 8.4311 0.4409 18 1 2.2763 9.2539 0.6344 19 6 4.3049 8.5445 0.7658 20 7 5.1729 7.7126 0.2497 21 14 4.8762 9.8833 1.9365 22 1 3.7079 10.6868 2.3775 23 1 5.5255 9.2628 3.1191 24 1 5.8494 10.7649 1.2431 25 6 3.1265 6.0206 0.0726 26 1 2.7716 -2.1388 0.1668 27 1 5.2298 -2.0670 0.1705 28 1 5.2577 2.0677 -0.1588 29 1 4.2640 3.6279 -0.2119 30 1 1.1143 3.9958 -1.7395 31 1 -0.0654 6.1211 -2.1096 32 1 0.7776 8.1965 -1.1048 33 1 6.1131 7.7914 0.4746 34 1 4.0177 5.9901 0.6817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192975496.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:04 Heat of formation + Delta-G solvation = 39.187544 kcal Electronic energy + Delta-G solvation = -21450.769741 eV Core-core repulsion = 18119.937083 eV Total energy + Delta-G solvation = -3330.832658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.06076 -40.62317 -38.99085 -37.78861 -36.12076 -35.21308 -33.90571 -32.87778 -31.47480 -30.14852 -27.21797 -26.41319 -25.45265 -23.29087 -23.00973 -21.47110 -20.62499 -19.32070 -18.90446 -17.98137 -17.27420 -16.70004 -16.53746 -16.35950 -16.31489 -16.08312 -15.36488 -15.05048 -14.84022 -14.53734 -14.32185 -14.24498 -14.19210 -14.07885 -13.52579 -13.27900 -13.04213 -12.82309 -12.64015 -12.36286 -11.88884 -11.61177 -11.39132 -11.11271 -11.03261 -10.88673 -10.61238 -10.38871 -9.36049 -8.90867 -8.57395 -6.36393 -0.84566 -0.26949 0.82843 1.01859 1.42262 1.49994 1.52646 1.56014 1.76969 1.91956 1.96136 2.23543 2.58076 2.71509 2.80246 3.16959 3.53875 3.61202 3.69486 3.73828 4.21336 4.40188 4.43853 4.56995 4.66945 4.79328 4.86630 5.04260 5.12340 5.16494 5.34077 5.38573 5.71465 5.79338 5.99279 6.06234 6.27818 6.32955 6.47079 6.66103 6.69666 6.92438 6.92984 7.09079 8.34125 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019604 B = 0.004035 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.948416 B = 6938.168979 C = 8024.296991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.265 3.735 3 C 0.061 3.939 4 C -0.109 4.109 5 C 0.146 3.854 6 N -0.479 5.479 7 C 0.151 3.849 8 C -0.159 4.159 9 C 0.546 3.454 10 O -0.552 6.552 11 N -0.645 5.645 12 C 0.151 3.849 13 C -0.240 4.240 14 C -0.085 4.085 15 C -0.247 4.247 16 C 0.093 3.907 17 C -0.497 4.497 18 H 0.075 0.925 19 C 0.041 3.959 20 N -0.818 5.818 21 Si 0.980 3.020 22 H -0.264 1.264 23 H -0.262 1.262 24 H -0.265 1.265 25 C -0.197 4.197 26 H 0.191 0.809 27 H 0.222 0.778 28 H 0.183 0.817 29 H 0.419 0.581 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.291 0.709 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.663 -16.694 1.143 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.050 4.050 3 C 0.049 3.951 4 C -0.131 4.131 5 C -0.011 4.011 6 N -0.187 5.187 7 C -0.006 4.006 8 C -0.166 4.166 9 C 0.334 3.666 10 O -0.430 6.430 11 N -0.290 5.290 12 C 0.058 3.942 13 C -0.261 4.261 14 C -0.104 4.104 15 C -0.267 4.267 16 C 0.091 3.909 17 C -0.527 4.527 18 H 0.093 0.907 19 C -0.174 4.174 20 N -0.443 5.443 21 Si 0.801 3.199 22 H -0.188 1.188 23 H -0.187 1.187 24 H -0.189 1.189 25 C -0.218 4.218 26 H 0.209 0.791 27 H 0.238 0.762 28 H 0.200 0.800 29 H 0.258 0.742 30 H 0.116 0.884 31 H 0.133 0.867 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.246 -16.746 1.107 17.907 hybrid contribution -0.261 1.121 0.263 1.180 sum 5.985 -15.626 1.371 16.789 Atomic orbital electron populations 1.81152 1.13440 1.08824 1.07227 1.25524 0.92822 0.92536 0.94151 1.16404 0.84145 0.94712 0.99817 1.22708 0.95827 0.97364 0.97163 1.23879 0.90907 0.97441 0.88895 1.67801 1.41117 0.98736 1.11056 1.23201 0.88412 0.98167 0.90862 1.20838 0.96287 0.91479 1.08038 1.18610 0.87012 0.84449 0.76493 1.90841 1.14937 1.87095 1.50174 1.43212 1.11060 1.04635 1.70082 1.17567 0.94681 0.84652 0.97328 1.20425 1.00303 0.97459 1.07936 1.20700 0.98497 0.92339 0.98874 1.21217 1.02348 0.97200 1.05918 1.17757 0.90947 0.93149 0.89096 1.19812 0.94747 1.00472 1.37629 0.90733 1.26650 0.96101 0.99164 0.95522 1.69823 1.04102 1.35556 1.34847 0.85189 0.78665 0.77878 0.78178 1.18763 1.18682 1.18940 1.21041 1.04453 0.90732 1.05590 0.79132 0.76209 0.80019 0.74195 0.88388 0.86658 0.88119 0.89836 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -15.24 18.49 19.00 0.35 -14.89 16 2 C 0.27 7.81 12.93 88.33 1.14 8.95 16 3 C 0.06 1.30 5.79 -20.97 -0.12 1.18 16 4 C -0.11 -1.11 9.85 22.61 0.22 -0.88 16 5 C 0.15 1.18 11.16 84.67 0.95 2.13 16 6 N -0.48 -7.08 10.32 -194.97 -2.01 -9.09 16 7 C 0.15 2.73 10.71 85.00 0.91 3.64 16 8 C -0.16 -3.85 5.92 -19.76 -0.12 -3.96 16 9 C 0.55 19.14 7.49 86.76 0.65 19.79 16 10 O -0.55 -24.26 12.25 -3.94 -0.05 -24.31 16 11 N -0.64 -23.23 5.28 -306.31 -1.62 -24.85 16 12 C 0.15 7.01 6.24 38.13 0.24 7.25 16 13 C -0.24 -11.63 8.66 22.59 0.20 -11.43 16 14 C -0.09 -4.08 10.01 22.20 0.22 -3.86 16 15 C -0.25 -12.57 9.79 22.75 0.22 -12.34 16 16 C 0.09 5.04 5.57 -21.31 -0.12 4.92 16 17 C -0.50 -26.40 9.05 23.46 0.21 -26.19 16 18 H 0.07 3.87 7.90 -2.91 -0.02 3.85 16 19 C 0.04 1.99 5.16 85.25 0.44 2.43 16 20 N -0.82 -39.74 10.94 21.82 0.24 -39.50 16 21 Si 0.98 36.75 29.59 68.60 2.03 38.78 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 23 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 24 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 25 C -0.20 -9.99 8.60 22.86 0.20 -9.80 16 26 H 0.19 0.54 8.06 -2.91 -0.02 0.52 16 27 H 0.22 -0.29 8.06 -2.91 -0.02 -0.31 16 28 H 0.18 2.72 6.43 -2.91 -0.02 2.70 16 29 H 0.42 11.91 6.90 -92.71 -0.64 11.27 16 30 H 0.10 4.75 6.47 -2.91 -0.02 4.73 16 31 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 32 H 0.10 4.82 8.06 -2.91 -0.02 4.79 16 33 H 0.29 12.54 8.30 -92.71 -0.77 11.77 16 34 H 0.12 6.06 6.17 -2.92 -0.02 6.04 16 Total: -1.00 -73.27 309.53 4.72 -68.55 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.54 Total: 23.50 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 5.24 Total: -18.18 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -3.04 Total: -88.34 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.05 Total: -24.31 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.78 kcal Total: -73.27 4.72 -68.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192975496.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.736 kcal (2) G-P(sol) polarization free energy of solvation -73.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds