Wall clock time and date at job start Tue Mar 31 2020 06:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39984 * 120.60780 * 163.79202 * 3 2 1 5 5 C 1.38368 * 118.34930 * 180.26291 * 4 3 2 6 6 C 1.38654 * 119.48549 * 359.48189 * 5 4 3 7 7 N 1.31584 * 121.21950 * 0.27887 * 6 5 4 8 8 C 1.32557 * 121.79234 * 359.97438 * 7 6 5 9 9 C 1.48112 * 119.81193 * 180.02562 * 8 7 6 10 10 O 1.21529 * 119.99616 * 179.97438 * 9 8 7 11 11 N 1.34774 * 119.99938 * 359.97438 * 9 8 7 12 12 C 1.39829 * 119.99634 * 174.89785 * 11 9 8 13 13 C 1.39316 * 119.94965 * 325.50823 * 12 11 9 14 14 C 1.38484 * 120.42414 * 179.76465 * 13 12 11 15 15 C 1.37691 * 120.32576 * 0.51409 * 14 13 12 16 16 C 1.40744 * 119.88790 * 359.74870 * 15 14 13 17 17 C 1.41408 * 120.20522 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99585 * 205.17160 * 17 16 15 19 19 C 1.39926 * 120.00426 * 25.16924 * 17 16 15 20 20 N 1.30835 * 119.99775 * 16.81180 * 19 17 16 21 21 Si 1.86799 * 120.00333 * 196.80883 * 19 17 16 22 22 H 1.48503 * 109.47109 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47072 * 120.00087 * 21 19 17 24 24 H 1.48499 * 109.47096 * 240.00153 * 21 19 17 25 25 C 1.38271 * 119.94993 * 145.79173 * 12 11 9 26 26 H 1.08005 * 120.82826 * 0.04421 * 4 3 2 27 27 H 1.07994 * 120.25687 * 179.75628 * 5 4 3 28 28 H 1.08000 * 119.39529 * 180.25646 * 6 5 4 29 29 H 0.96992 * 120.00311 * 354.90366 * 11 9 8 30 30 H 1.08002 * 119.79087 * 0.02941 * 13 12 11 31 31 H 1.08000 * 119.83565 * 180.24210 * 14 13 12 32 32 H 1.07995 * 120.05516 * 179.76547 * 15 14 13 33 33 H 0.96999 * 120.00236 * 180.02562 * 20 19 17 34 34 H 1.07999 * 120.16173 * 359.95114 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2802 1.1579 -0.3363 5 6 4.6628 1.1046 -0.3264 6 6 5.2977 -0.0775 0.0230 7 7 4.6096 -1.1531 0.3408 8 6 3.2841 -1.1589 0.3428 9 6 2.5537 -2.3945 0.7084 10 8 1.3384 -2.4034 0.7118 11 7 3.2368 -3.5088 1.0373 12 6 2.5514 -4.6423 1.4850 13 6 1.3995 -4.4994 2.2555 14 6 0.7103 -5.6153 2.7001 15 6 1.1624 -6.8793 2.3939 16 6 2.3277 -7.0393 1.6210 17 6 2.7977 -8.3343 1.3022 18 1 3.8440 -8.4907 1.0853 19 6 1.9072 -9.4131 1.2677 20 7 0.6187 -9.1958 1.2011 21 14 2.5578 -11.1634 1.3168 22 1 4.0408 -11.1383 1.3915 23 1 2.0143 -11.8602 2.5102 24 1 2.1357 -11.8831 0.0884 25 6 3.0212 -5.9034 1.1673 26 1 2.7633 2.0687 -0.6004 27 1 5.2429 1.9781 -0.5846 28 1 6.3770 -0.1162 0.0342 29 1 4.2038 -3.5244 0.9635 30 1 1.0393 -3.5121 2.5042 31 1 -0.1838 -5.4935 3.2935 32 1 0.6236 -7.7465 2.7460 33 1 0.0013 -9.9436 1.1776 34 1 3.9161 -6.0153 0.5733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196559473.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:47 Heat of formation + Delta-G solvation = 37.235613 kcal Electronic energy + Delta-G solvation = -21270.870385 eV Core-core repulsion = 17939.953085 eV Total energy + Delta-G solvation = -3330.917300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.04686 -40.60108 -38.99230 -37.69519 -36.24659 -34.99535 -33.78620 -32.83618 -31.81657 -30.09455 -27.24186 -26.31178 -25.38680 -23.37328 -22.84866 -21.59591 -20.29626 -19.43974 -19.15872 -17.82508 -17.35151 -16.86492 -16.66822 -16.46981 -16.25907 -15.60266 -15.32272 -14.86139 -14.81989 -14.52489 -14.20711 -14.16126 -14.09379 -13.98265 -13.58616 -13.28813 -13.02606 -12.92610 -12.75592 -12.33984 -11.96136 -11.51070 -11.39568 -11.13595 -11.03826 -10.89219 -10.62728 -10.31148 -9.46494 -8.83521 -8.62640 -6.38167 -0.82736 -0.07876 0.85287 0.93204 1.40286 1.49175 1.56472 1.59891 1.71522 1.94061 1.96948 2.22272 2.67834 2.71894 2.84752 3.01764 3.58788 3.68430 3.84018 3.92594 4.29077 4.38104 4.45062 4.59387 4.89038 4.95878 4.97542 5.00396 5.06786 5.16005 5.30102 5.48539 5.67150 5.77158 6.03597 6.05692 6.19318 6.39686 6.45690 6.63991 6.69432 6.90127 6.92297 7.09790 8.33433 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.027950 B = 0.003400 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.542661 B = 8234.495308 C = 8929.676599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.269 3.731 3 C -0.036 4.036 4 C -0.025 4.025 5 C -0.115 4.115 6 C 0.127 3.873 7 N -0.472 5.472 8 C 0.111 3.889 9 C 0.547 3.453 10 O -0.548 6.548 11 N -0.633 5.633 12 C 0.159 3.841 13 C -0.239 4.239 14 C -0.098 4.098 15 C -0.192 4.192 16 C 0.096 3.904 17 C -0.493 4.493 18 H 0.084 0.916 19 C 0.032 3.968 20 N -0.828 5.828 21 Si 0.988 3.012 22 H -0.253 1.253 23 H -0.265 1.265 24 H -0.268 1.268 25 C -0.249 4.249 26 H 0.185 0.815 27 H 0.207 0.793 28 H 0.215 0.785 29 H 0.426 0.574 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.288 0.712 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.344 18.962 -3.479 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.047 4.047 3 C -0.043 4.043 4 C -0.052 4.052 5 C -0.135 4.135 6 C -0.033 4.033 7 N -0.184 5.184 8 C -0.029 4.029 9 C 0.334 3.666 10 O -0.425 6.425 11 N -0.278 5.278 12 C 0.066 3.934 13 C -0.260 4.260 14 C -0.117 4.117 15 C -0.211 4.211 16 C 0.093 3.907 17 C -0.523 4.523 18 H 0.102 0.898 19 C -0.182 4.182 20 N -0.454 5.454 21 Si 0.808 3.192 22 H -0.176 1.176 23 H -0.190 1.190 24 H -0.193 1.193 25 C -0.271 4.271 26 H 0.203 0.797 27 H 0.224 0.776 28 H 0.231 0.769 29 H 0.265 0.735 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.947 18.083 -3.265 21.918 hybrid contribution -0.184 -0.452 -0.114 0.501 sum 11.763 17.631 -3.379 21.463 Atomic orbital electron populations 1.81147 1.13608 1.09001 1.08283 1.25542 0.92869 0.92560 0.93694 1.16970 0.84658 0.96714 1.06005 1.22155 0.95256 0.95859 0.91936 1.22951 0.93505 1.01154 0.95844 1.23967 1.02791 0.86743 0.89763 1.67660 1.04789 1.32500 1.13410 1.20700 0.90974 0.91458 0.99813 1.18637 0.86786 0.83878 0.77331 1.90862 1.14641 1.83978 1.52981 1.43130 1.11448 1.10367 1.62831 1.17451 0.94358 0.85612 0.95933 1.20387 1.00149 0.97390 1.08053 1.20782 0.98533 0.92749 0.99629 1.21327 1.00709 0.95667 1.03431 1.17756 0.91218 0.93106 0.88591 1.19863 0.96544 0.92369 1.43489 0.89780 1.26859 0.94369 1.06014 0.90995 1.69912 1.04419 1.35732 1.35290 0.85076 0.79939 0.75381 0.78785 1.17593 1.19013 1.19269 1.20890 1.05904 0.90451 1.09818 0.79722 0.77578 0.76897 0.73509 0.88503 0.87483 0.87615 0.90119 0.86840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -16.63 18.42 19.00 0.35 -16.28 16 2 C 0.27 8.35 12.78 88.33 1.13 9.48 16 3 C -0.04 -0.80 5.77 -21.05 -0.12 -0.93 16 4 C -0.02 -0.23 9.90 22.72 0.23 0.00 16 5 C -0.12 -0.32 10.10 22.40 0.23 -0.10 16 6 C 0.13 0.95 11.17 84.83 0.95 1.90 16 7 N -0.47 -8.97 9.54 -184.00 -1.76 -10.73 16 8 C 0.11 2.92 6.78 42.22 0.29 3.20 16 9 C 0.55 20.60 7.51 86.87 0.65 21.25 16 10 O -0.55 -25.42 12.05 -3.81 -0.05 -25.46 16 11 N -0.63 -24.15 5.32 -306.02 -1.63 -25.78 16 12 C 0.16 7.60 6.24 38.13 0.24 7.84 16 13 C -0.24 -12.16 8.66 22.59 0.20 -11.97 16 14 C -0.10 -5.12 10.02 22.20 0.22 -4.89 16 15 C -0.19 -10.70 8.69 22.75 0.20 -10.50 16 16 C 0.10 5.36 5.57 -21.31 -0.12 5.24 16 17 C -0.49 -26.72 9.05 23.46 0.21 -26.51 16 18 H 0.08 4.29 7.90 -2.91 -0.02 4.27 16 19 C 0.03 1.65 5.15 85.25 0.44 2.09 16 20 N -0.83 -44.65 10.94 21.82 0.24 -44.41 16 21 Si 0.99 38.32 29.59 68.60 2.03 40.35 16 22 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 23 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 24 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 25 C -0.25 -12.52 9.70 22.86 0.22 -12.30 16 26 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 27 H 0.21 -1.48 8.06 -2.91 -0.02 -1.50 16 28 H 0.21 -0.20 8.06 -2.91 -0.02 -0.22 16 29 H 0.43 13.34 8.16 -92.71 -0.76 12.58 16 30 H 0.10 4.94 6.47 -2.91 -0.02 4.92 16 31 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 32 H 0.11 6.09 6.17 -2.91 -0.02 6.07 16 33 H 0.29 14.01 8.30 -92.71 -0.77 13.25 16 34 H 0.11 5.18 8.06 -2.91 -0.02 5.15 16 Total: -1.00 -80.25 311.56 4.56 -75.68 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.42 Total: 22.82 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 4.95 Total: -16.19 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -2.79 Total: -97.19 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.05 Total: -25.46 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -80.25 4.56 -75.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196559473.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.920 kcal (2) G-P(sol) polarization free energy of solvation -80.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds