Wall clock time and date at job start Tue Mar 31 2020 06:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47031 * 267.42331 * 3 2 1 5 5 N 1.46499 * 109.47084 * 180.02562 * 4 3 2 6 6 C 1.46505 * 120.00230 * 269.99853 * 5 4 3 7 7 C 1.50693 * 109.47160 * 270.00512 * 6 5 4 8 8 H 1.08005 * 120.00138 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99887 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00076 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99799 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47085 * 60.00146 * 11 9 7 13 13 H 1.48505 * 109.46677 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47043 * 299.99706 * 11 9 7 15 15 C 1.34781 * 120.00259 * 90.00100 * 5 4 3 16 16 S 1.71202 * 120.00073 * 179.97438 * 15 5 4 17 17 N 1.34771 * 119.99489 * 0.02562 * 15 5 4 18 18 C 1.46505 * 119.99622 * 180.02562 * 17 15 5 19 19 C 1.50703 * 109.47064 * 179.97438 * 18 17 15 20 20 C 1.34515 * 125.79060 * 89.99944 * 19 18 17 21 21 C 1.41380 * 106.83832 * 179.97438 * 20 19 18 22 22 C 1.34506 * 106.84493 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.78568 * 269.69282 * 19 18 17 24 24 H 1.09002 * 109.46981 * 147.42452 * 3 2 1 25 25 H 1.09004 * 109.47790 * 27.42325 * 3 2 1 26 26 H 1.09002 * 109.47139 * 60.00218 * 4 3 2 27 27 H 1.09001 * 109.47263 * 299.99955 * 4 3 2 28 28 H 1.09002 * 109.46764 * 30.00200 * 6 5 4 29 29 H 1.08993 * 109.47395 * 149.99993 * 6 5 4 30 30 H 0.97002 * 120.00054 * 179.97438 * 10 9 7 31 31 H 0.96996 * 120.00772 * 359.97438 * 17 15 5 32 32 H 1.09002 * 109.47068 * 299.99729 * 18 17 15 33 33 H 1.09001 * 109.47372 * 59.99816 * 18 17 15 34 34 H 1.07996 * 126.58016 * 0.03378 * 20 19 18 35 35 H 1.08006 * 126.57610 * 179.97438 * 21 20 19 36 36 H 1.08005 * 125.79499 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.0657 1.4411 5 7 4.5829 0.0670 1.4410 6 6 5.3166 -1.1998 1.4979 7 6 5.5680 -1.5705 2.9367 8 1 5.2168 -0.9267 3.7296 9 6 6.2464 -2.7317 3.2410 10 7 6.6744 -3.5154 2.2756 11 14 6.5586 -3.1909 5.0247 12 1 5.2615 -3.3372 5.7325 13 1 7.3011 -4.4757 5.0822 14 1 7.3611 -2.1252 5.6770 15 6 5.2558 1.2336 1.3888 16 16 6.9679 1.2351 1.3894 17 7 4.5809 2.3990 1.3370 18 6 5.3124 3.6671 1.2796 19 6 4.3321 4.8106 1.2284 20 6 3.8207 5.4566 2.2917 21 6 2.9512 6.4509 1.7876 22 6 2.9836 6.3535 0.4465 23 8 3.8253 5.3612 0.1132 24 1 2.9709 0.8668 -0.5533 25 1 2.9718 -0.9114 -0.4733 26 1 2.7550 -0.8004 1.9944 27 1 2.7542 0.9778 1.9144 28 1 4.7282 -1.9822 1.0186 29 1 6.2688 -1.0918 0.9788 30 1 7.1520 -4.3322 2.4897 31 1 3.6110 2.3983 1.3370 32 1 5.9396 3.7652 2.1657 33 1 5.9384 3.6855 0.3875 34 1 4.0343 5.2551 3.3310 35 1 2.3721 7.1539 2.3681 36 1 2.4298 6.9709 -0.2453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200558463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:35 Heat of formation + Delta-G solvation = 69.256051 kcal Electronic energy + Delta-G solvation = -20460.434722 eV Core-core repulsion = 17266.349883 eV Total energy + Delta-G solvation = -3194.084838 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.82777 -39.27000 -36.87544 -35.73341 -33.25379 -32.90488 -31.80566 -30.60123 -27.57919 -25.94578 -25.02959 -23.06026 -22.00817 -21.25517 -20.56287 -18.33991 -17.79735 -17.25973 -16.92810 -16.45480 -15.99155 -15.21442 -14.99408 -14.66515 -14.58766 -14.32715 -13.80516 -13.66954 -13.08609 -12.97993 -12.92593 -12.71382 -12.55669 -12.34659 -12.03107 -11.46313 -11.36004 -11.11928 -10.89592 -10.70446 -10.34051 -10.20159 -10.16063 -9.74158 -8.87811 -8.47568 -8.38306 -7.07373 -6.52730 -6.08265 -4.11854 1.32526 2.00486 2.26767 2.50106 2.63458 2.65200 2.76076 3.31014 3.33166 3.37627 3.42781 3.55738 4.05117 4.35839 4.43337 4.66963 4.76515 4.78307 4.80447 5.12788 5.27109 5.28719 5.45103 5.50827 5.57008 5.70587 5.74140 5.84094 6.20471 6.22584 6.47084 6.86618 7.06309 7.36564 7.38995 7.44195 7.84367 7.86757 8.10488 8.86262 9.51498 11.00321 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.004649 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.619470 B = 6021.417500 C = 7160.202704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.214 3.786 3 C -0.048 4.048 4 C 0.100 3.900 5 N -0.540 5.540 6 C 0.237 3.763 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.070 3.930 10 N -0.890 5.890 11 Si 0.897 3.103 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.561 3.439 16 S -0.638 6.638 17 N -0.705 5.705 18 C 0.214 3.786 19 C -0.036 4.036 20 C -0.184 4.184 21 C -0.218 4.218 22 C -0.033 4.033 23 O -0.171 6.171 24 H 0.107 0.893 25 H 0.124 0.876 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.265 0.735 31 H 0.391 0.609 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.090 15.932 -3.885 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.105 4.105 3 C -0.090 4.090 4 C -0.029 4.029 5 N -0.246 5.246 6 C 0.119 3.881 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.133 4.133 10 N -0.528 5.528 11 Si 0.725 3.275 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.203 3.797 16 S -0.509 6.509 17 N -0.341 5.341 18 C 0.090 3.910 19 C -0.086 4.086 20 C -0.204 4.204 21 C -0.238 4.238 22 C -0.101 4.101 23 O -0.066 6.066 24 H 0.125 0.875 25 H 0.142 0.858 26 H 0.128 0.872 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.229 0.771 32 H 0.132 0.868 33 H 0.118 0.882 34 H 0.170 0.830 35 H 0.167 0.833 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -9.472 15.593 -4.215 18.725 hybrid contribution -0.924 -0.091 1.241 1.550 sum -10.396 15.502 -2.975 18.900 Atomic orbital electron populations 1.81231 1.12849 1.09022 1.08139 1.28931 0.94930 0.93108 0.93487 1.19792 0.81808 1.07012 1.00368 1.21599 0.82031 1.04884 0.94370 1.47794 1.04567 1.07059 1.65204 1.20014 0.93934 0.74873 0.99245 1.21080 1.37478 1.06432 0.91088 0.92560 1.24798 0.94998 0.96082 0.97463 1.69892 1.37819 1.13380 1.31712 0.86568 0.78291 0.77789 0.84846 1.20507 1.21203 1.19979 1.22181 0.95453 0.80886 0.81171 1.93281 0.89559 1.94307 1.73721 1.45019 1.09130 1.04211 1.75768 1.19803 0.89445 0.75377 1.06339 1.22505 1.02033 1.00151 0.83944 1.21776 1.00368 0.98266 1.00015 1.21889 1.04270 1.02977 0.94616 1.24125 0.96174 0.93043 0.96762 1.84065 1.47828 1.40252 1.34476 0.87478 0.85824 0.87191 0.90816 0.94241 0.90065 0.92551 0.77091 0.86815 0.88175 0.83036 0.83304 0.78008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.09 18.54 42.15 0.78 -5.31 16 2 C 0.21 2.42 15.43 -20.76 -0.32 2.10 16 3 C -0.05 -0.46 6.03 -29.52 -0.18 -0.64 16 4 C 0.10 1.22 5.13 -4.04 -0.02 1.20 16 5 N -0.54 -9.20 2.46 -177.09 -0.43 -9.63 16 6 C 0.24 5.31 4.92 -5.19 -0.03 5.28 16 7 C -0.52 -13.36 9.39 -34.44 -0.32 -13.69 16 8 H 0.06 1.46 7.81 -52.48 -0.41 1.05 16 9 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 10 N -0.89 -24.85 13.29 55.43 0.74 -24.11 16 11 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.56 9.68 7.70 -86.92 -0.67 9.01 16 16 S -0.64 -14.23 27.17 -107.50 -2.92 -17.15 16 17 N -0.71 -9.00 5.41 -63.21 -0.34 -9.34 16 18 C 0.21 2.54 5.66 -5.19 -0.03 2.51 16 19 C -0.04 -0.38 6.69 -35.62 -0.24 -0.62 16 20 C -0.18 -1.80 10.81 -39.70 -0.43 -2.23 16 21 C -0.22 -1.85 10.91 -39.71 -0.43 -2.28 16 22 C -0.03 -0.26 12.09 29.41 0.36 0.09 16 23 O -0.17 -1.80 10.65 5.68 0.06 -1.74 16 24 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.11 1.42 8.07 -51.93 -0.42 1.00 16 27 H 0.07 0.75 6.36 -51.93 -0.33 0.42 16 28 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 29 H 0.08 2.10 6.58 -51.93 -0.34 1.76 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.39 4.12 6.19 -40.82 -0.25 3.87 16 32 H 0.11 1.42 7.99 -51.93 -0.41 1.00 16 33 H 0.10 1.26 7.99 -51.93 -0.42 0.84 16 34 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 35 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.20 0.88 8.06 -52.48 -0.42 0.45 16 LS Contribution 336.42 15.07 5.07 5.07 Total: -1.00 -33.10 336.42 -8.73 -41.83 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.25 Total: 1.84 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.41 Total: 2.50 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.74 Total: -48.40 kcal Atomic # 8 Polarization: -1.80 SS G_CDS: 0.06 Total: -1.74 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -14.23 SS G_CDS: -2.92 Total: -17.15 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.10 -8.73 -41.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200558463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.089 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds