Wall clock time and date at job start Tue Mar 31 2020 06:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47031 * 267.42331 * 3 2 1 5 5 N 1.46499 * 109.47084 * 180.02562 * 4 3 2 6 6 C 1.46505 * 120.00230 * 269.99853 * 5 4 3 7 7 C 1.50693 * 109.47160 * 270.00512 * 6 5 4 8 8 H 1.08005 * 120.00138 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99887 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00076 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99799 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47085 * 60.00146 * 11 9 7 13 13 H 1.48505 * 109.46677 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47043 * 299.99706 * 11 9 7 15 15 C 1.34781 * 120.00259 * 90.00100 * 5 4 3 16 16 S 1.71202 * 120.00073 * 179.97438 * 15 5 4 17 17 N 1.34771 * 119.99489 * 0.02562 * 15 5 4 18 18 C 1.46505 * 119.99622 * 180.02562 * 17 15 5 19 19 C 1.50703 * 109.47064 * 179.97438 * 18 17 15 20 20 C 1.34515 * 125.79060 * 89.99944 * 19 18 17 21 21 C 1.41380 * 106.83832 * 179.97438 * 20 19 18 22 22 C 1.34506 * 106.84493 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.78568 * 269.69282 * 19 18 17 24 24 H 1.09002 * 109.46981 * 147.42452 * 3 2 1 25 25 H 1.09004 * 109.47790 * 27.42325 * 3 2 1 26 26 H 1.09002 * 109.47139 * 60.00218 * 4 3 2 27 27 H 1.09001 * 109.47263 * 299.99955 * 4 3 2 28 28 H 1.09002 * 109.46764 * 30.00200 * 6 5 4 29 29 H 1.08993 * 109.47395 * 149.99993 * 6 5 4 30 30 H 0.97002 * 120.00054 * 179.97438 * 10 9 7 31 31 H 0.96996 * 120.00772 * 359.97438 * 17 15 5 32 32 H 1.09002 * 109.47068 * 299.99729 * 18 17 15 33 33 H 1.09001 * 109.47372 * 59.99816 * 18 17 15 34 34 H 1.07996 * 126.58016 * 0.03378 * 20 19 18 35 35 H 1.08006 * 126.57610 * 179.97438 * 21 20 19 36 36 H 1.08005 * 125.79499 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.0657 1.4411 5 7 4.5829 0.0670 1.4410 6 6 5.3166 -1.1998 1.4979 7 6 5.5680 -1.5705 2.9367 8 1 5.2168 -0.9267 3.7296 9 6 6.2464 -2.7317 3.2410 10 7 6.6744 -3.5154 2.2756 11 14 6.5586 -3.1909 5.0247 12 1 5.2615 -3.3372 5.7325 13 1 7.3011 -4.4757 5.0822 14 1 7.3611 -2.1252 5.6770 15 6 5.2558 1.2336 1.3888 16 16 6.9679 1.2351 1.3894 17 7 4.5809 2.3990 1.3370 18 6 5.3124 3.6671 1.2796 19 6 4.3321 4.8106 1.2284 20 6 3.8207 5.4566 2.2917 21 6 2.9512 6.4509 1.7876 22 6 2.9836 6.3535 0.4465 23 8 3.8253 5.3612 0.1132 24 1 2.9709 0.8668 -0.5533 25 1 2.9718 -0.9114 -0.4733 26 1 2.7550 -0.8004 1.9944 27 1 2.7542 0.9778 1.9144 28 1 4.7282 -1.9822 1.0186 29 1 6.2688 -1.0918 0.9788 30 1 7.1520 -4.3322 2.4897 31 1 3.6110 2.3983 1.3370 32 1 5.9396 3.7652 2.1657 33 1 5.9384 3.6855 0.3875 34 1 4.0343 5.2551 3.3310 35 1 2.3721 7.1539 2.3681 36 1 2.4298 6.9709 -0.2453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200558463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:35 Heat of formation + Delta-G solvation = 49.694722 kcal Electronic energy + Delta-G solvation = -20461.282965 eV Core-core repulsion = 17266.349883 eV Total energy + Delta-G solvation = -3194.933081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.54902 -40.60689 -37.89631 -36.99297 -34.76732 -33.95958 -32.94019 -31.67387 -29.17075 -27.05234 -26.22927 -24.77219 -22.70724 -22.46427 -21.47718 -19.45980 -18.80565 -18.64170 -18.18478 -17.83669 -16.96390 -16.42134 -16.15589 -16.09889 -15.83010 -15.30600 -15.18942 -14.75608 -14.42090 -13.81208 -13.76839 -13.75202 -13.59369 -13.52668 -13.25527 -13.09438 -12.81518 -12.55116 -12.40179 -12.20293 -12.01908 -11.91145 -11.54911 -10.90303 -10.51101 -9.79432 -9.58800 -8.78032 -8.28406 -8.10983 -6.19547 0.52585 0.57457 1.13342 1.43998 1.48970 1.53381 1.59374 1.62273 1.72319 1.84853 2.07919 2.45419 2.50150 3.04158 3.23771 3.59654 3.71654 3.82651 4.10601 4.15328 4.26086 4.38023 4.50421 4.60301 4.81970 4.84532 4.89031 5.00578 5.11856 5.16332 5.36466 5.55715 5.68591 5.80290 5.96170 6.13875 6.15860 6.44538 6.49184 6.85236 7.46399 8.96205 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.004649 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.619470 B = 6021.417500 C = 7160.202704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.243 3.757 3 C -0.035 4.035 4 C 0.095 3.905 5 N -0.538 5.538 6 C 0.254 3.746 7 C -0.524 4.524 8 H 0.050 0.950 9 C 0.021 3.979 10 N -0.921 5.921 11 Si 0.951 3.049 12 H -0.265 1.265 13 H -0.285 1.285 14 H -0.283 1.283 15 C 0.589 3.411 16 S -0.742 6.742 17 N -0.675 5.675 18 C 0.219 3.781 19 C -0.055 4.055 20 C -0.182 4.182 21 C -0.230 4.230 22 C -0.023 4.023 23 O -0.185 6.185 24 H 0.130 0.870 25 H 0.131 0.869 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.264 0.736 31 H 0.409 0.591 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.158 0.842 35 H 0.170 0.830 36 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.488 17.558 -3.673 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.075 4.075 3 C -0.076 4.076 4 C -0.031 4.031 5 N -0.242 5.242 6 C 0.134 3.866 7 C -0.563 4.563 8 H 0.069 0.931 9 C -0.179 4.179 10 N -0.561 5.561 11 Si 0.777 3.223 12 H -0.190 1.190 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.226 3.774 16 S -0.614 6.614 17 N -0.310 5.310 18 C 0.096 3.904 19 C -0.105 4.105 20 C -0.202 4.202 21 C -0.249 4.249 22 C -0.091 4.091 23 O -0.082 6.082 24 H 0.147 0.853 25 H 0.149 0.851 26 H 0.126 0.874 27 H 0.119 0.881 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.250 0.750 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.176 0.824 35 H 0.188 0.812 36 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -11.946 17.262 -3.998 21.370 hybrid contribution -0.303 -0.453 1.152 1.274 sum -12.250 16.810 -2.847 20.994 Atomic orbital electron populations 1.81279 1.14167 1.10641 1.09455 1.28930 0.94728 0.91670 0.92171 1.19718 0.80637 1.08508 0.98763 1.21863 0.78552 1.06336 0.96391 1.47479 1.06471 1.05458 1.64805 1.19449 0.93120 0.76944 0.97125 1.21369 1.36540 1.05881 0.92482 0.93136 1.25500 0.95208 0.96479 1.00687 1.69989 1.38960 1.13844 1.33290 0.85723 0.78494 0.77063 0.81018 1.18976 1.21040 1.20922 1.21479 0.93405 0.82093 0.80449 1.93513 0.94761 1.95087 1.78056 1.44922 1.09890 1.03197 1.72953 1.19693 0.89801 0.75265 1.05656 1.22104 1.03237 1.00645 0.84513 1.22019 0.99919 0.98135 1.00165 1.22207 1.04428 1.03182 0.95098 1.24924 0.94724 0.91874 0.97582 1.84054 1.48494 1.41085 1.34547 0.85259 0.85128 0.87408 0.88068 0.93725 0.93691 0.92714 0.75004 0.87513 0.88997 0.82426 0.81208 0.74439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.35 18.54 20.00 0.37 -11.98 16 2 C 0.24 4.81 15.43 89.44 1.38 6.19 16 3 C -0.03 -0.56 6.03 28.79 0.17 -0.39 16 4 C 0.10 2.06 5.13 86.38 0.44 2.50 16 5 N -0.54 -17.66 2.46 -714.18 -1.75 -19.41 16 6 C 0.25 11.40 4.92 85.63 0.42 11.82 16 7 C -0.52 -26.87 9.39 25.60 0.24 -26.63 16 8 H 0.05 2.60 7.81 -2.91 -0.02 2.58 16 9 C 0.02 1.13 5.46 84.66 0.46 1.59 16 10 N -0.92 -52.18 13.29 21.45 0.28 -51.89 16 11 Si 0.95 43.30 29.54 68.60 2.03 45.32 16 12 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 14 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 15 C 0.59 19.91 7.70 179.05 1.38 21.29 16 16 S -0.74 -34.23 27.17 -56.49 -1.53 -35.77 16 17 N -0.67 -16.03 5.41 -353.89 -1.92 -17.94 16 18 C 0.22 5.02 5.66 85.63 0.48 5.50 16 19 C -0.06 -1.06 6.69 24.83 0.17 -0.90 16 20 C -0.18 -3.12 10.81 22.19 0.24 -2.88 16 21 C -0.23 -3.15 10.91 22.19 0.24 -2.91 16 22 C -0.02 -0.30 12.09 66.97 0.81 0.51 16 23 O -0.19 -3.45 10.65 -2.58 -0.03 -3.48 16 24 H 0.13 1.63 8.14 -2.39 -0.02 1.62 16 25 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.11 2.50 8.07 -2.39 -0.02 2.48 16 27 H 0.10 1.66 6.36 -2.39 -0.02 1.65 16 28 H 0.04 1.97 8.07 -2.39 -0.02 1.95 16 29 H 0.05 2.40 6.58 -2.39 -0.02 2.38 16 30 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.41 7.27 6.19 -92.71 -0.57 6.70 16 32 H 0.11 2.67 7.99 -2.39 -0.02 2.65 16 33 H 0.09 2.32 7.99 -2.39 -0.02 2.30 16 34 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 35 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.24 1.00 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -74.26 336.42 4.43 -69.83 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.54 Total: 9.61 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 6.44 Total: 15.70 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -3.01 Total: -101.22 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.03 Total: -3.48 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -34.23 SS G_CDS: -1.53 Total: -35.77 kcal Total: -74.26 4.43 -69.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200558463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.528 kcal (2) G-P(sol) polarization free energy of solvation -74.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds