Wall clock time and date at job start Tue Mar 31 2020 06:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40276 * 120.52815 * 259.59830 * 3 2 1 5 5 C 1.38126 * 118.38988 * 179.97438 * 4 3 2 6 6 F 1.35101 * 120.31216 * 180.02562 * 5 4 3 7 7 C 1.39308 * 119.37293 * 359.97438 * 5 4 3 8 8 O 1.35579 * 119.48328 * 179.97438 * 7 5 4 9 9 N 1.32337 * 121.03428 * 0.25955 * 7 5 4 10 10 C 1.32185 * 121.75340 * 359.47132 * 9 7 5 11 11 O 1.35507 * 119.74278 * 180.29211 * 10 9 7 12 12 C 1.42906 * 117.00380 * 0.23039 * 11 10 9 13 13 H 1.08997 * 110.63635 * 29.30047 * 12 11 10 14 14 C 1.55155 * 110.72007 * 152.43991 * 12 11 10 15 15 C 1.55126 * 101.48248 * 153.73745 * 14 12 11 16 16 N 1.47423 * 104.94273 * 323.22244 * 15 14 12 17 17 C 1.36943 * 125.64927 * 203.97113 * 16 15 14 18 18 H 1.08002 * 120.00046 * 180.02562 * 17 16 15 19 19 C 1.38812 * 119.99670 * 0.03761 * 17 16 15 20 20 N 1.31615 * 120.00263 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99629 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47403 * 89.99978 * 21 19 17 23 23 H 1.48500 * 109.46969 * 210.00210 * 21 19 17 24 24 H 1.48501 * 109.47405 * 329.99912 * 21 19 17 25 25 C 1.47026 * 108.70408 * 24.00580 * 16 15 14 26 26 H 1.08001 * 120.80855 * 359.95745 * 4 3 2 27 27 H 0.96700 * 114.00318 * 90.00086 * 8 7 5 28 28 H 1.08995 * 111.00579 * 271.94302 * 14 12 11 29 29 H 1.08999 * 111.00801 * 35.79464 * 14 12 11 30 30 H 1.09004 * 110.41794 * 204.29553 * 15 14 12 31 31 H 1.08995 * 110.30196 * 82.09080 * 15 14 12 32 32 H 0.96999 * 120.00256 * 180.02562 * 20 19 17 33 33 H 1.09003 * 109.87958 * 239.52560 * 25 16 15 34 34 H 1.08996 * 110.01245 * 118.43352 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2804 0.2191 1.1885 5 6 4.6607 0.2099 1.1379 6 9 5.3855 0.4155 2.2593 7 6 5.2983 -0.0145 -0.0802 8 8 6.6531 -0.0235 -0.1326 9 7 4.6024 -0.2135 -1.1881 10 6 3.2806 -0.2187 -1.1879 11 8 2.6089 -0.4324 -2.3452 12 6 3.3931 -0.6487 -3.5201 13 1 4.3478 -1.1090 -3.2654 14 6 2.6191 -1.5206 -4.5438 15 6 3.2618 -1.0697 -5.8818 16 7 3.5074 0.3747 -5.7177 17 6 3.6205 1.2855 -6.7341 18 1 3.8019 2.3261 -6.5090 19 6 3.5020 0.8712 -8.0536 20 7 3.2802 -0.3968 -8.3280 21 14 3.6571 2.1135 -9.4400 22 1 5.0782 2.2126 -9.8592 23 1 2.8304 1.6744 -10.5928 24 1 3.1859 3.4411 -8.9702 25 6 3.6114 0.6752 -4.2823 26 1 2.7623 0.3907 2.1204 27 1 7.0466 -0.8948 0.0125 28 1 2.7912 -2.5815 -4.3625 29 1 1.5538 -1.2907 -4.5264 30 1 2.5769 -1.2463 -6.7112 31 1 4.2008 -1.5978 -6.0472 32 1 3.1978 -0.6863 -9.2500 33 1 2.8457 1.3971 -3.9982 34 1 4.5998 1.0749 -4.0556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226009038.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:23 Heat of formation + Delta-G solvation = -38.914207 kcal Electronic energy + Delta-G solvation = -22692.656629 eV Core-core repulsion = 18927.668001 eV Total energy + Delta-G solvation = -3764.988629 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.096 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.98297 -42.17764 -40.19004 -38.74763 -37.83436 -37.26747 -34.33459 -33.78107 -31.54201 -30.77485 -29.05242 -26.65762 -25.78296 -24.81288 -22.22158 -22.13592 -20.68596 -20.42573 -19.44018 -18.89235 -18.68268 -17.52832 -17.03087 -16.90665 -16.64369 -16.04892 -15.91437 -15.54936 -15.25080 -14.82421 -14.64559 -14.53000 -14.34777 -14.27242 -13.81344 -13.65661 -13.46466 -13.25032 -12.95201 -12.89683 -12.69233 -12.26751 -12.04237 -11.88215 -11.68186 -11.47673 -11.17914 -11.04213 -10.78226 -9.57419 -8.95884 -7.81456 -5.26849 -0.83040 -0.22945 1.41891 1.47051 1.48825 1.56519 1.59539 1.60383 2.10009 2.43365 2.48223 2.59147 2.89767 3.29827 3.37055 3.55694 3.66725 3.71520 3.81580 3.94191 4.12964 4.22390 4.42349 4.53946 4.67812 4.84195 4.87170 4.93777 5.10724 5.41974 5.54517 5.72354 5.92126 6.18351 6.25921 6.35679 6.55852 7.06322 7.71083 8.33470 9.20799 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.021196 B = 0.003837 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.661426 B = 7295.076111 C = 7961.225057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.287 3.713 3 C -0.089 4.089 4 C 0.018 3.982 5 C 0.003 3.997 6 F -0.114 7.114 7 C 0.371 3.629 8 O -0.475 6.475 9 N -0.551 5.551 10 C 0.382 3.618 11 O -0.292 6.292 12 C 0.095 3.905 13 H 0.112 0.888 14 C -0.125 4.125 15 C 0.156 3.844 16 N -0.623 5.623 17 C -0.245 4.245 18 H 0.078 0.922 19 C -0.060 4.060 20 N -0.946 5.946 21 Si 0.982 3.018 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.272 1.272 25 C 0.124 3.876 26 H 0.208 0.792 27 H 0.434 0.566 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.003 0.997 32 H 0.250 0.750 33 H 0.022 0.978 34 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.515 -3.122 22.262 22.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.028 4.028 3 C -0.096 4.096 4 C -0.009 4.009 5 C -0.021 4.021 6 F -0.093 7.093 7 C 0.189 3.811 8 O -0.288 6.288 9 N -0.284 5.284 10 C 0.200 3.800 11 O -0.197 6.197 12 C 0.039 3.961 13 H 0.129 0.871 14 C -0.164 4.164 15 C 0.031 3.969 16 N -0.350 5.350 17 C -0.374 4.374 18 H 0.096 0.904 19 C -0.253 4.253 20 N -0.595 5.595 21 Si 0.810 3.190 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.197 1.197 25 C -0.002 4.002 26 H 0.225 0.775 27 H 0.298 0.702 28 H 0.120 0.880 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.021 0.979 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.942 -2.678 21.154 21.525 hybrid contribution 0.657 0.301 -0.356 0.806 sum 3.599 -2.377 20.798 21.240 Atomic orbital electron populations 1.81281 1.12697 1.09958 1.07684 1.24889 0.91738 0.92952 0.93246 1.15554 0.85251 1.16514 0.92307 1.21645 0.90995 0.89849 0.98415 1.18029 0.89592 1.11578 0.82851 1.91582 1.76874 1.92833 1.47979 1.19078 0.85548 0.90952 0.85498 1.84750 1.12159 1.38031 1.93819 1.66928 1.07079 1.22647 1.31763 1.19582 0.85968 0.88213 0.86239 1.86352 1.35467 1.83042 1.14824 1.23420 0.95604 0.96091 0.80983 0.87059 1.23126 0.99866 0.99618 0.93773 1.21811 0.97455 0.82643 0.95000 1.44642 1.84780 1.05287 1.00320 1.19421 1.41925 0.90120 0.85913 0.90374 1.25616 1.02035 0.98358 0.99309 1.69982 1.56607 1.15007 1.17947 0.85030 0.77402 0.78137 0.78443 1.21086 1.21653 1.19698 1.21646 0.98129 0.95539 0.84912 0.77512 0.70178 0.87964 0.91330 0.89985 0.97937 0.94007 0.95973 0.95114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -12.53 18.54 19.00 0.35 -12.18 16 2 C 0.29 6.74 14.90 88.33 1.32 8.06 16 3 C -0.09 -1.70 5.77 -21.05 -0.12 -1.82 16 4 C 0.02 0.21 9.88 22.74 0.22 0.43 16 5 C 0.00 0.04 7.33 22.50 0.16 0.21 16 6 F -0.11 -1.53 17.11 44.97 0.77 -0.76 16 7 C 0.37 6.65 7.74 84.87 0.66 7.31 16 8 O -0.48 -7.31 13.41 -88.87 -1.19 -8.51 16 9 N -0.55 -13.14 8.68 -420.87 -3.65 -16.80 16 10 C 0.38 9.48 7.50 85.13 0.64 10.11 16 11 O -0.29 -9.12 9.28 -88.08 -0.82 -9.93 16 12 C 0.10 3.33 3.18 31.78 0.10 3.43 16 13 H 0.11 3.63 7.04 -2.39 -0.02 3.61 16 14 C -0.13 -4.65 6.83 32.06 0.22 -4.43 16 15 C 0.16 7.59 5.89 86.93 0.51 8.10 16 16 N -0.62 -32.75 3.40 -691.55 -2.35 -35.10 16 17 C -0.25 -13.98 10.27 84.03 0.86 -13.11 16 18 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 19 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16 20 N -0.95 -55.74 10.09 21.65 0.22 -55.52 16 21 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 25 C 0.12 5.36 7.02 86.73 0.61 5.97 16 26 H 0.21 0.79 8.06 -2.91 -0.02 0.77 16 27 H 0.43 1.92 9.06 -74.06 -0.67 1.25 16 28 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 29 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.08 4.54 5.87 -2.38 -0.01 4.53 16 31 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 33 H 0.02 0.99 8.06 -2.39 -0.02 0.98 16 34 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -71.70 309.97 1.51 -70.18 By element: Atomic # 1 Polarization: -0.90 SS G_CDS: 0.50 Total: -0.39 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 5.65 Total: 21.29 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -5.43 Total: -119.59 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -2.01 Total: -18.44 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.77 Total: -0.76 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.70 1.51 -70.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226009038.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.270 kcal (2) G-P(sol) polarization free energy of solvation -71.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds