Wall clock time and date at job start Tue Mar 31 2020 06:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42903 * 114.16593 * 272.37549 * 12 11 10 14 14 C 1.35523 * 116.99832 * 243.84255 * 13 12 11 15 15 N 1.32349 * 120.11536 * 0.02562 * 14 13 12 16 16 C 1.31764 * 120.32619 * 180.02562 * 15 14 13 17 17 N 1.31259 * 121.48480 * 0.02562 * 16 15 14 18 18 C 1.33830 * 121.87805 * 359.97438 * 17 16 15 19 19 C 1.37161 * 118.51365 * 359.72084 * 18 17 16 20 20 C 1.52078 * 115.79626 * 179.79567 * 19 18 17 21 21 S 1.83287 * 103.52174 * 343.02737 * 20 19 18 22 22 C 1.52166 * 125.79065 * 180.02562 * 18 17 16 23 23 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 26 26 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 27 27 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 28 28 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 29 29 H 1.08997 * 114.34366 * 139.68828 * 12 11 10 30 30 H 1.08000 * 119.25973 * 180.02562 * 16 15 14 31 31 H 1.08999 * 110.77932 * 224.42863 * 20 19 18 32 32 H 1.09000 * 110.54502 * 101.51381 * 20 19 18 33 33 H 1.08999 * 110.61921 * 315.87260 * 22 18 17 34 34 H 1.08997 * 110.62072 * 78.87972 * 22 18 17 35 35 H 1.09000 * 113.47556 * 253.46531 * 23 10 9 36 36 H 1.08995 * 113.47619 * 23.88291 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 3.6677 -6.0089 -0.3471 14 6 4.2161 -7.0613 -1.0015 15 7 3.5984 -7.5884 -2.0466 16 6 4.1275 -8.6120 -2.6857 17 7 5.2708 -9.1371 -2.3114 18 6 5.9577 -8.6626 -1.2654 19 6 5.4451 -7.5933 -0.5760 20 6 6.2732 -7.1079 0.6036 21 16 7.4059 -8.5096 0.9378 22 6 7.2868 -9.2004 -0.7557 23 6 1.5184 -4.8986 0.2386 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 0.8897 26 1 0.6240 -2.5568 -0.8903 27 1 1.6756 -3.8466 -2.0765 28 1 3.4598 -3.7930 -1.7440 29 1 1.9088 -6.2223 -1.4965 30 1 3.6089 -9.0284 -3.5366 31 1 5.6381 -6.9131 1.4677 32 1 6.8368 -6.2149 0.3336 33 1 7.2741 -10.2899 -0.7259 34 1 8.1089 -8.8418 -1.3751 35 1 1.6915 -5.3047 1.2352 36 1 0.4629 -4.8828 -0.0327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233895840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:09 Heat of formation + Delta-G solvation = 64.347090 kcal Electronic energy + Delta-G solvation = -20524.061278 eV Core-core repulsion = 17329.763571 eV Total energy + Delta-G solvation = -3194.297707 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.65186 -39.89616 -37.46713 -35.36572 -33.12773 -32.70089 -29.70570 -29.26979 -27.59458 -25.65064 -25.35086 -23.34708 -23.24198 -21.69935 -20.04150 -18.36861 -18.05735 -16.57442 -16.43887 -16.24141 -15.53924 -15.33430 -15.21516 -14.78242 -14.57987 -14.07741 -13.97050 -13.70943 -13.64892 -13.24031 -13.09957 -12.39558 -12.08615 -11.99116 -11.53508 -11.14472 -11.06548 -10.95254 -10.68480 -10.57325 -10.35255 -10.07750 -9.77067 -9.66006 -9.33513 -9.11277 -8.47742 -8.13023 -7.95274 -6.08025 -4.09415 0.48017 0.79353 1.31398 1.69852 2.62401 3.31358 3.34946 3.36460 3.38602 3.41510 3.73819 4.13415 4.26945 4.39026 4.60500 4.62866 4.76585 4.78694 4.95700 5.06162 5.11006 5.23104 5.27606 5.45221 5.59350 5.80055 5.88662 6.00100 6.08505 6.22005 6.50141 6.54630 7.03803 7.11178 7.57394 7.74064 7.78728 8.03178 8.38756 8.97719 9.54922 11.03036 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.023818 B = 0.003291 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.276279 B = 8506.266513 C = 9163.638583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.156 3.844 10 N -0.458 5.458 11 C 0.002 3.998 12 C 0.046 3.954 13 O -0.256 6.256 14 C 0.399 3.601 15 N -0.570 5.570 16 C 0.346 3.654 17 N -0.541 5.541 18 C 0.189 3.811 19 C -0.221 4.221 20 C -0.013 4.013 21 S -0.243 6.243 22 C -0.026 4.026 23 C -0.002 4.002 24 H 0.262 0.738 25 H 0.031 0.969 26 H 0.005 0.995 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.207 0.793 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.084 0.916 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.337 -19.544 -3.720 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.213 1.213 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.030 3.970 10 N -0.181 5.181 11 C -0.127 4.127 12 C -0.011 4.011 13 O -0.157 6.157 14 C 0.208 3.792 15 N -0.301 5.301 16 C 0.058 3.942 17 N -0.261 5.261 18 C 0.048 3.952 19 C -0.228 4.228 20 C -0.161 4.161 21 S -0.016 6.016 22 C -0.174 4.174 23 C -0.131 4.131 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.023 0.977 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.126 0.874 30 H 0.223 0.777 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.102 0.898 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.946 -19.654 -2.721 22.661 hybrid contribution -0.865 1.597 -1.049 2.097 sum 10.081 -18.057 -3.769 21.021 Atomic orbital electron populations 1.69941 1.06079 1.27012 1.50959 1.25007 0.94905 0.99427 0.95333 0.86520 0.79425 0.82515 0.78735 1.21298 1.20087 1.20246 1.21043 0.93578 0.89700 1.50151 0.91895 1.20302 0.90683 0.89204 0.96783 1.69111 1.33453 1.01488 1.14074 1.24172 1.02910 0.91172 0.94465 1.23825 0.82600 0.96139 0.98544 1.86363 1.37318 1.40926 1.51109 1.20021 0.87250 0.85434 0.86473 1.68144 1.36616 1.15547 1.09759 1.24640 0.87522 0.86322 0.95743 1.67916 1.09648 1.32785 1.15714 1.21805 0.94099 0.89796 0.89543 1.20990 0.96933 1.01515 1.03332 1.22659 0.97159 0.97984 0.98327 1.88008 1.63639 1.33723 1.16245 1.22840 0.94514 1.05160 0.94892 1.24071 0.96553 0.93239 0.99246 0.92799 0.95122 0.97737 0.90151 0.90159 0.87441 0.77693 0.86078 0.86964 0.85519 0.86143 0.89788 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.39 9.39 -34.44 -0.32 -14.72 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.16 4.02 4.57 -4.98 -0.02 4.00 16 10 N -0.46 -9.87 6.32 -246.08 -1.55 -11.43 16 11 C 0.00 0.04 7.55 -7.54 -0.06 -0.01 16 12 C 0.05 0.71 4.54 -26.20 -0.12 0.59 16 13 O -0.26 -3.99 9.98 -18.26 -0.18 -4.17 16 14 C 0.40 5.50 7.54 -16.47 -0.12 5.37 16 15 N -0.57 -7.26 8.71 -14.56 -0.13 -7.39 16 16 C 0.35 3.61 12.29 -92.64 -1.14 2.47 16 17 N -0.54 -5.98 10.41 -10.49 -0.11 -6.09 16 18 C 0.19 2.05 7.04 -81.39 -0.57 1.48 16 19 C -0.22 -2.67 5.97 -103.47 -0.62 -3.28 16 20 C -0.01 -0.13 7.14 36.69 0.26 0.13 16 21 S -0.24 -2.39 23.44 -107.50 -2.52 -4.91 16 22 C -0.03 -0.21 7.39 36.73 0.27 0.06 16 23 C 0.00 -0.03 7.52 -7.53 -0.06 -0.09 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 25 H 0.03 0.84 8.08 -51.92 -0.42 0.42 16 26 H 0.00 0.13 7.30 -51.93 -0.38 -0.25 16 27 H 0.08 1.45 7.42 -51.93 -0.39 1.07 16 28 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 29 H 0.11 1.51 6.88 -51.93 -0.36 1.15 16 30 H 0.21 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.08 1.31 7.91 -51.93 -0.41 0.90 16 LS Contribution 320.03 15.07 4.82 4.82 Total: -1.00 -31.63 320.03 -11.01 -42.64 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.46 Total: -1.78 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -2.60 Total: -2.54 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -1.05 Total: -50.79 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.18 Total: -4.17 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -2.39 SS G_CDS: -2.52 Total: -4.91 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.63 -11.01 -42.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233895840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.984 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds