Wall clock time and date at job start Tue Mar 31 2020 06:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42903 * 114.16593 * 272.37549 * 12 11 10 14 14 C 1.35523 * 116.99832 * 243.84255 * 13 12 11 15 15 N 1.32349 * 120.11536 * 0.02562 * 14 13 12 16 16 C 1.31764 * 120.32619 * 180.02562 * 15 14 13 17 17 N 1.31259 * 121.48480 * 0.02562 * 16 15 14 18 18 C 1.33830 * 121.87805 * 359.97438 * 17 16 15 19 19 C 1.37161 * 118.51365 * 359.72084 * 18 17 16 20 20 C 1.52078 * 115.79626 * 179.79567 * 19 18 17 21 21 S 1.83287 * 103.52174 * 343.02737 * 20 19 18 22 22 C 1.52166 * 125.79065 * 180.02562 * 18 17 16 23 23 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 26 26 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 27 27 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 28 28 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 29 29 H 1.08997 * 114.34366 * 139.68828 * 12 11 10 30 30 H 1.08000 * 119.25973 * 180.02562 * 16 15 14 31 31 H 1.08999 * 110.77932 * 224.42863 * 20 19 18 32 32 H 1.09000 * 110.54502 * 101.51381 * 20 19 18 33 33 H 1.08999 * 110.61921 * 315.87260 * 22 18 17 34 34 H 1.08997 * 110.62072 * 78.87972 * 22 18 17 35 35 H 1.09000 * 113.47556 * 253.46531 * 23 10 9 36 36 H 1.08995 * 113.47619 * 23.88291 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 3.6677 -6.0089 -0.3471 14 6 4.2161 -7.0613 -1.0015 15 7 3.5984 -7.5884 -2.0466 16 6 4.1275 -8.6120 -2.6857 17 7 5.2708 -9.1371 -2.3114 18 6 5.9577 -8.6626 -1.2654 19 6 5.4451 -7.5933 -0.5760 20 6 6.2732 -7.1079 0.6036 21 16 7.4059 -8.5096 0.9378 22 6 7.2868 -9.2004 -0.7557 23 6 1.5184 -4.8986 0.2386 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 0.8897 26 1 0.6240 -2.5568 -0.8903 27 1 1.6756 -3.8466 -2.0765 28 1 3.4598 -3.7930 -1.7440 29 1 1.9088 -6.2223 -1.4965 30 1 3.6089 -9.0284 -3.5366 31 1 5.6381 -6.9131 1.4677 32 1 6.8368 -6.2149 0.3336 33 1 7.2741 -10.2899 -0.7259 34 1 8.1089 -8.8418 -1.3751 35 1 1.6915 -5.3047 1.2352 36 1 0.4629 -4.8828 -0.0327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233895840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:08 Heat of formation + Delta-G solvation = 41.884655 kcal Electronic energy + Delta-G solvation = -20525.035322 eV Core-core repulsion = 17329.763571 eV Total energy + Delta-G solvation = -3195.271751 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.59771 -41.23921 -38.73621 -36.20761 -35.07615 -33.82869 -31.26987 -30.27574 -28.52456 -27.34351 -26.92076 -24.43054 -24.21554 -23.38969 -21.29942 -19.38413 -19.11441 -18.54893 -17.49630 -17.23549 -17.01054 -16.52433 -16.22124 -16.12445 -15.73200 -15.49345 -15.11278 -14.93127 -14.64834 -14.38639 -14.27316 -13.92709 -13.53406 -13.16006 -13.09737 -12.89046 -12.44442 -12.36432 -12.11631 -11.90062 -11.73997 -11.58854 -11.34158 -11.08860 -10.64481 -10.57916 -10.11373 -9.66368 -8.88778 -8.25469 -6.35556 -0.36263 -0.15161 0.56772 0.93263 1.38312 1.41250 1.49567 1.54757 2.37320 2.49387 2.61220 2.89033 3.06657 3.20203 3.26036 3.29125 3.47973 3.77803 3.84618 4.12804 4.18376 4.24428 4.37674 4.39640 4.46848 4.53586 4.56751 4.64663 4.69562 4.85291 4.99750 5.10086 5.53456 5.63959 5.73099 5.95196 6.04811 6.39463 6.77764 6.86626 7.33906 8.85313 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.023818 B = 0.003291 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.276279 B = 8506.266513 C = 9163.638583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.172 3.828 10 N -0.483 5.483 11 C 0.000 4.000 12 C 0.074 3.926 13 O -0.273 6.273 14 C 0.380 3.620 15 N -0.582 5.582 16 C 0.346 3.654 17 N -0.543 5.543 18 C 0.190 3.810 19 C -0.233 4.233 20 C -0.012 4.012 21 S -0.253 6.253 22 C -0.016 4.016 23 C -0.001 4.001 24 H 0.266 0.734 25 H 0.005 0.995 26 H -0.012 1.012 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.129 0.871 30 H 0.244 0.756 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.091 0.909 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.635 -20.758 -4.611 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.204 1.204 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.568 4.568 8 H 0.073 0.927 9 C 0.045 3.955 10 N -0.206 5.206 11 C -0.130 4.130 12 C 0.017 3.983 13 O -0.175 6.175 14 C 0.189 3.811 15 N -0.313 5.313 16 C 0.058 3.942 17 N -0.262 5.262 18 C 0.048 3.952 19 C -0.239 4.239 20 C -0.161 4.161 21 S -0.026 6.026 22 C -0.164 4.164 23 C -0.130 4.130 24 H 0.075 0.925 25 H 0.023 0.977 26 H 0.006 0.994 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.147 0.853 30 H 0.259 0.741 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.109 0.891 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.257 -20.901 -3.621 24.499 hybrid contribution -1.223 1.841 -0.804 2.352 sum 11.034 -19.060 -4.426 22.464 Atomic orbital electron populations 1.70051 1.07552 1.28122 1.51460 1.25893 0.95810 1.03117 0.94619 0.85451 0.78241 0.77970 0.79065 1.20417 1.19489 1.19336 1.21371 0.93446 0.91377 1.50567 0.92688 1.19970 0.90652 0.90276 0.94641 1.69017 1.33086 1.02028 1.16460 1.24182 1.02490 0.93251 0.93048 1.23474 0.82696 0.94900 0.97240 1.86329 1.37212 1.42098 1.51859 1.20219 0.88054 0.85517 0.87287 1.68142 1.37047 1.16358 1.09714 1.25433 0.87348 0.85365 0.96014 1.68026 1.09840 1.32697 1.15644 1.22234 0.94790 0.89118 0.89046 1.21176 0.96684 1.02060 1.04029 1.22609 0.97186 0.98531 0.97743 1.88054 1.63205 1.33467 1.17906 1.22996 0.93680 1.06144 0.93608 1.24128 0.97352 0.91077 1.00480 0.92498 0.97694 0.99388 0.89978 0.90846 0.85336 0.74061 0.86761 0.86747 0.83571 0.83995 0.89104 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.53 -30.76 9.39 25.60 0.24 -30.52 16 8 H 0.05 3.20 7.81 -2.91 -0.02 3.18 16 9 C 0.17 9.12 4.57 85.55 0.39 9.51 16 10 N -0.48 -21.25 6.32 -932.86 -5.89 -27.14 16 11 C 0.00 -0.01 7.55 83.58 0.63 0.62 16 12 C 0.07 2.26 4.54 30.94 0.14 2.40 16 13 O -0.27 -8.40 9.98 -88.26 -0.88 -9.28 16 14 C 0.38 10.09 7.54 85.17 0.64 10.74 16 15 N -0.58 -13.82 8.71 -312.89 -2.73 -16.55 16 16 C 0.35 6.33 12.29 181.05 2.23 8.56 16 17 N -0.54 -10.60 10.41 -187.11 -1.95 -12.55 16 18 C 0.19 3.73 7.04 42.47 0.30 4.03 16 19 C -0.23 -5.36 5.97 -19.12 -0.11 -5.48 16 20 C -0.01 -0.25 7.14 71.68 0.51 0.27 16 21 S -0.25 -4.60 23.44 -56.49 -1.32 -5.92 16 22 C -0.02 -0.22 7.39 71.71 0.53 0.31 16 23 C 0.00 -0.05 7.52 83.58 0.63 0.58 16 24 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 25 H 0.00 0.28 8.08 -2.38 -0.02 0.26 16 26 H -0.01 -0.64 7.30 -2.39 -0.02 -0.66 16 27 H 0.08 3.00 7.42 -2.39 -0.02 2.99 16 28 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.13 3.42 6.88 -2.39 -0.02 3.41 16 30 H 0.24 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.09 2.95 7.91 -2.39 -0.02 2.93 16 Total: -1.00 -68.33 320.03 -2.77 -71.10 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 1.10 Total: 7.48 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 6.59 Total: 1.69 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -10.28 Total: -111.82 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.88 Total: -9.28 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: -4.60 SS G_CDS: -1.32 Total: -5.92 kcal Total: -68.33 -2.77 -71.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233895840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.983 kcal (2) G-P(sol) polarization free energy of solvation -68.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds